Difference between revisions of "NONHSAT007611"
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sequence = <dnaseq>AGATCAACCTGGATGCCTTCCTTCACAATAATCTCATGGAGGTAATTTAAAGAATCCCTTTTTTGGAGAGTCAGAGAGAAAAGCAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAGTACTGGTGACAGTAACAGTTTCCCTCTGTCTTTTGGCTGTCCACACTGAAGGATGATAGAGATGAGTAGAAGAAGGCCAAACCCAGCCATCACCAGAACAGGGCCTGCTGGCTTTGTGAGCATTTCACAATATTGTCTGGAGCTGTTTGGCTTATAGAAGAGGGAAGGTACTATGAGCTAATTTGTGTCAAGCTACTCCTCACAGCTATAGGCAGGAAGTGCTATTTCCT</dnaseq>| | sequence = <dnaseq>AGATCAACCTGGATGCCTTCCTTCACAATAATCTCATGGAGGTAATTTAAAGAATCCCTTTTTTGGAGAGTCAGAGAGAAAAGCAAAAAAAAAGAGCATGAGGAATTTGAAGACTGAGAGATGAGTTGTGTAGCACCAACATTTTCTTTCTGCCTGACCTTCATACCTGATGAATTAAAAGTACTGGTGACAGTAACAGTTTCCCTCTGTCTTTTGGCTGTCCACACTGAAGGATGATAGAGATGAGTAGAAGAAGGCCAAACCCAGCCATCACCAGAACAGGGCCTGCTGGCTTTGTGAGCATTTCACAATATTGTCTGGAGCTGTTTGGCTTATAGAAGAGGGAAGGTACTATGAGCTAATTTGTGTCAAGCTACTCCTCACAGCTATAGGCAGGAAGTGCTATTTCCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:NONHSAG003471]] | + | [[Category:Antisense]][[Category:NONHSAG003471]][[Category:Transcripts]] |
Revision as of 11:21, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT007611 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
411 nt |
| Genomic location |
chr1-:172350061..172384516 |
| Exon number |
4 |
| Exons |
172350061..172350113,172355921..172356097,172368959..172369056,172384434..172384516 |
| Genome context |
|
| Sequence |
000001 AGATCAACCT GGATGCCTTC CTTCACAATA ATCTCATGGA GGTAATTTAA AGAATCCCTT TTTTGGAGAG TCAGAGAGAA 000080
000081 AAGCAAAAAA AAAGAGCATG AGGAATTTGA AGACTGAGAG ATGAGTTGTG TAGCACCAAC ATTTTCTTTC TGCCTGACCT 000160 000161 TCATACCTGA TGAATTAAAA GTACTGGTGA CAGTAACAGT TTCCCTCTGT CTTTTGGCTG TCCACACTGA AGGATGATAG 000240 000241 AGATGAGTAG AAGAAGGCCA AACCCAGCCA TCACCAGAAC AGGGCCTGCT GGCTTTGTGA GCATTTCACA ATATTGTCTG 000320 000321 GAGCTGTTTG GCTTATAGAA GAGGGAAGGT ACTATGAGCT AATTTGTGTC AAGCTACTCC TCACAGCTAT AGGCAGGAAG 000400 000401 TGCTATTTCC T |
Predicted Small Protein
| Name | NONHSAT007611_smProtein_233:337 |
| Length | 35 |
| Molecular weight | 3812.4452 |
| Aromaticity | 0.0882352941176 |
| Instability index | 97.6735294118 |
| Isoelectric point | 9.48919677734 |
| Runs | 6 |
| Runs residual | 0.00967982129561 |
| Runs probability | 0.0127627627628 |
| Amino acid sequence | MIEMSRRRPNPAITRTGPAGFVSISQYCLELFGL |
| Secondary structure | LEEELLLLLLLLLLLLLLLLLEEHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
