Difference between revisions of "NONHSAT069684"

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sequence = <dnaseq>TGTGCTGCGGAAACAGATGCAGCACCAGTTGAACCAAGCGGGCCCTGTTCTGGATGGTCCCTGCCTCAGAGAGGTGCAGAAACAGCATAGAAGACATGCTGGGGGGTGGGGTGCCTTTAGCTTGCTGGAACAGTGAGGAGGCTGTGGGGCAGAGGGAAAGCTCTGCCCCTTTCAGTGCAGTATAAGCCCAACTTCCGACTGCTGTGCAGAGAGAGGGCACCAGGGACCTTCCTAGACAAGAGCAGGAGTTGGTGTATCAGAAGGAAGCTTGGTCCTTATCTTGACATCATGAGTTTTAGAGTGACTGAAGGAGTGGAAGATGCCGCAAACACTCTGGAGAGCAGTACCAACCTGGAGGATTCGGATGACTTCAGACATCATGGGCGCAAGACACCTGGTAGTATAGAAGCCAGGTCCATCCTGCCAAGGAAGAGAACATGAGCTCACTGGCCCTGCTGCTGGGACTGAGTCTGAAACACTCTACCTTTCCCAGGGTCACTTCAAAGTCATTTGAAAGTCACTGTAAAACTTAAGGTGACTTAAAATCTCAATCAGAATCCTTAAAAATGAAATTGCAGGGGAAGCCGTACTAGGGGTAGCCTGGCTTGAATCAAACAGTACAGCAGATAGTTTCATGGTCACCTTCAAGGTCTGGGATGGCTGGGAGAACCCTGCCACATCCTAGATACTCCCCACTCCCACCTTGACTCAGTGGGACAGTCAATACCACCGTCCATCCTGGAGACAACCCAGGGGAAAATCATATCAAAGTCTGGTCATTTGCCCCAGAATATTTATAAACAAGCCTGGAGGTAAAAGGAGTCTTATTAGAACTTTTCAAAAACTCTGCAGCTCTGTTATACAGCCCCTTACCTTAACCACAATGATGACCTTCCCCTGCTTGAGACCAACTGCTACAGCTGAAGCACTGGTGTCTTTGGAAGTTTTCTCGGTCGTGATAATCTCCAGCAGCTGCATCTTGTCCACGGGAGAGAAGTAGTGCATGCCAATCACCTGGCAAGGGGAACCAAAAGCCAACAGATCGGAGAATGCGGGTGAGGAACCTGAGAGCATTCCTTCTCTGCTAGGAAAACACTAGAAAGAAAGGTGGCTGTGATATAGGAATACTGCTTGACATAGCTGAGTGGTTTGGTTCCATGGGTCTTTGATAAAAGTTTAGTATGTTTAGGGAGAGCACATTGGAATCCTCCTCTTCCATTTGCTTCTAAGGTTTTTCACTACAGACATCTGATCCTCCCAACAATCAGTGCCAAAACCGCAGCTCGAGGCCAAACTAGATTTATTGGGGAACGACGGATGAAGGTTCCACTTATATTAATGATACTGATGGTTTAGATAAGAGGATCCAGTTTTTTTGGGCGGGGGTGGGGCAGGCAGAAGAATTAATGTGTTGGGCTGTCAGAGAAGTATTTGCATTTTACACAGATGGGTCTCACCACCAGGATACTAGGTTTAACTAACACTCCTCAACAGTCAAATGCACTTAAGACTCATTAAACCAGCAGTTCTCCAAGTGTAGTACCCGGACCCAACAAGCACTGTCATCACCTGGGAGCGTTAGGCCTGCACATTCTCAGGCCTAGCCCAGCCCTACTGAATCAGAAACTCCATGGGTGGGGCCCAGATTTGTTTTAATAATCCCTCCTGGTGATTCTGATGCGTGCTAAGGCTTCAGAGAACCCCCTCATTGAGCTAACAGTTACATAGTCTTCCCAACAGAACTGTGGTGAAAGAAGTCTAATTCATTAATTTATAGTTTTGCTTTCTCCCTCTCACTTTAGCTATAAGGTACAACAAGTGATATCTGTAATTTTTGGCTGCTCATTATCTACCTGCTCTTCAATACATTTACCACTTATTCCTTACATTTAATCCATTACAACCCTATGAACTGGTCAGCCTAATTATCTAGATGAGGAAAAAAGGTATCAAGAGGTTAGTAGTACAGAGTCAGTCAGCATATGACGGGGTGGGATTCCATCACAGGTCTGTCTATCTCCAATGCCATTATGTAATACACAGATCAAGTAAATGTTATGTAAACTTATCAATCCAAAAGTTGTTTCTAACCCCTAAAGTGTTCTTTTACTTACATCTGAAATACTTAGGACCTGATTCAGACTCAGTACTCCTGAGCAAAAGGAATTAGCCTTTATTGATGTAGAATTTCTATATAATAAAATGCACAGATCTTGAAGTGTTCACATC</dnaseq>|
 
sequence = <dnaseq>TGTGCTGCGGAAACAGATGCAGCACCAGTTGAACCAAGCGGGCCCTGTTCTGGATGGTCCCTGCCTCAGAGAGGTGCAGAAACAGCATAGAAGACATGCTGGGGGGTGGGGTGCCTTTAGCTTGCTGGAACAGTGAGGAGGCTGTGGGGCAGAGGGAAAGCTCTGCCCCTTTCAGTGCAGTATAAGCCCAACTTCCGACTGCTGTGCAGAGAGAGGGCACCAGGGACCTTCCTAGACAAGAGCAGGAGTTGGTGTATCAGAAGGAAGCTTGGTCCTTATCTTGACATCATGAGTTTTAGAGTGACTGAAGGAGTGGAAGATGCCGCAAACACTCTGGAGAGCAGTACCAACCTGGAGGATTCGGATGACTTCAGACATCATGGGCGCAAGACACCTGGTAGTATAGAAGCCAGGTCCATCCTGCCAAGGAAGAGAACATGAGCTCACTGGCCCTGCTGCTGGGACTGAGTCTGAAACACTCTACCTTTCCCAGGGTCACTTCAAAGTCATTTGAAAGTCACTGTAAAACTTAAGGTGACTTAAAATCTCAATCAGAATCCTTAAAAATGAAATTGCAGGGGAAGCCGTACTAGGGGTAGCCTGGCTTGAATCAAACAGTACAGCAGATAGTTTCATGGTCACCTTCAAGGTCTGGGATGGCTGGGAGAACCCTGCCACATCCTAGATACTCCCCACTCCCACCTTGACTCAGTGGGACAGTCAATACCACCGTCCATCCTGGAGACAACCCAGGGGAAAATCATATCAAAGTCTGGTCATTTGCCCCAGAATATTTATAAACAAGCCTGGAGGTAAAAGGAGTCTTATTAGAACTTTTCAAAAACTCTGCAGCTCTGTTATACAGCCCCTTACCTTAACCACAATGATGACCTTCCCCTGCTTGAGACCAACTGCTACAGCTGAAGCACTGGTGTCTTTGGAAGTTTTCTCGGTCGTGATAATCTCCAGCAGCTGCATCTTGTCCACGGGAGAGAAGTAGTGCATGCCAATCACCTGGCAAGGGGAACCAAAAGCCAACAGATCGGAGAATGCGGGTGAGGAACCTGAGAGCATTCCTTCTCTGCTAGGAAAACACTAGAAAGAAAGGTGGCTGTGATATAGGAATACTGCTTGACATAGCTGAGTGGTTTGGTTCCATGGGTCTTTGATAAAAGTTTAGTATGTTTAGGGAGAGCACATTGGAATCCTCCTCTTCCATTTGCTTCTAAGGTTTTTCACTACAGACATCTGATCCTCCCAACAATCAGTGCCAAAACCGCAGCTCGAGGCCAAACTAGATTTATTGGGGAACGACGGATGAAGGTTCCACTTATATTAATGATACTGATGGTTTAGATAAGAGGATCCAGTTTTTTTGGGCGGGGGTGGGGCAGGCAGAAGAATTAATGTGTTGGGCTGTCAGAGAAGTATTTGCATTTTACACAGATGGGTCTCACCACCAGGATACTAGGTTTAACTAACACTCCTCAACAGTCAAATGCACTTAAGACTCATTAAACCAGCAGTTCTCCAAGTGTAGTACCCGGACCCAACAAGCACTGTCATCACCTGGGAGCGTTAGGCCTGCACATTCTCAGGCCTAGCCCAGCCCTACTGAATCAGAAACTCCATGGGTGGGGCCCAGATTTGTTTTAATAATCCCTCCTGGTGATTCTGATGCGTGCTAAGGCTTCAGAGAACCCCCTCATTGAGCTAACAGTTACATAGTCTTCCCAACAGAACTGTGGTGAAAGAAGTCTAATTCATTAATTTATAGTTTTGCTTTCTCCCTCTCACTTTAGCTATAAGGTACAACAAGTGATATCTGTAATTTTTGGCTGCTCATTATCTACCTGCTCTTCAATACATTTACCACTTATTCCTTACATTTAATCCATTACAACCCTATGAACTGGTCAGCCTAATTATCTAGATGAGGAAAAAAGGTATCAAGAGGTTAGTAGTACAGAGTCAGTCAGCATATGACGGGGTGGGATTCCATCACAGGTCTGTCTATCTCCAATGCCATTATGTAATACACAGATCAAGTAAATGTTATGTAAACTTATCAATCCAAAAGTTGTTTCTAACCCCTAAAGTGTTCTTTTACTTACATCTGAAATACTTAGGACCTGATTCAGACTCAGTACTCCTGAGCAAAAGGAATTAGCCTTTATTGATGTAGAATTTCTATATAATAAAATGCACAGATCTTGAAGTGTTCACATC</dnaseq>|
 
}}
 
}}
[[Category:Antisense]][[Category:NONHSAG027276]]
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[[Category:Antisense]][[Category:NONHSAG027276]][[Category:Transcripts]]

Revision as of 11:33, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT069684

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2229 nt

Genomic location

chr2+:26417088..26419316

Exon number

1

Exons

26417088..26419316

Genome context

Sequence
000001 TGTGCTGCGG AAACAGATGC AGCACCAGTT GAACCAAGCG GGCCCTGTTC TGGATGGTCC CTGCCTCAGA GAGGTGCAGA 000080
000081 AACAGCATAG AAGACATGCT GGGGGGTGGG GTGCCTTTAG CTTGCTGGAA CAGTGAGGAG GCTGTGGGGC AGAGGGAAAG 000160
000161 CTCTGCCCCT TTCAGTGCAG TATAAGCCCA ACTTCCGACT GCTGTGCAGA GAGAGGGCAC CAGGGACCTT CCTAGACAAG 000240
000241 AGCAGGAGTT GGTGTATCAG AAGGAAGCTT GGTCCTTATC TTGACATCAT GAGTTTTAGA GTGACTGAAG GAGTGGAAGA 000320
000321 TGCCGCAAAC ACTCTGGAGA GCAGTACCAA CCTGGAGGAT TCGGATGACT TCAGACATCA TGGGCGCAAG ACACCTGGTA 000400
000401 GTATAGAAGC CAGGTCCATC CTGCCAAGGA AGAGAACATG AGCTCACTGG CCCTGCTGCT GGGACTGAGT CTGAAACACT 000480
000481 CTACCTTTCC CAGGGTCACT TCAAAGTCAT TTGAAAGTCA CTGTAAAACT TAAGGTGACT TAAAATCTCA ATCAGAATCC 000560
000561 TTAAAAATGA AATTGCAGGG GAAGCCGTAC TAGGGGTAGC CTGGCTTGAA TCAAACAGTA CAGCAGATAG TTTCATGGTC 000640
000641 ACCTTCAAGG TCTGGGATGG CTGGGAGAAC CCTGCCACAT CCTAGATACT CCCCACTCCC ACCTTGACTC AGTGGGACAG 000720
000721 TCAATACCAC CGTCCATCCT GGAGACAACC CAGGGGAAAA TCATATCAAA GTCTGGTCAT TTGCCCCAGA ATATTTATAA 000800
000801 ACAAGCCTGG AGGTAAAAGG AGTCTTATTA GAACTTTTCA AAAACTCTGC AGCTCTGTTA TACAGCCCCT TACCTTAACC 000880
000881 ACAATGATGA CCTTCCCCTG CTTGAGACCA ACTGCTACAG CTGAAGCACT GGTGTCTTTG GAAGTTTTCT CGGTCGTGAT 000960
000961 AATCTCCAGC AGCTGCATCT TGTCCACGGG AGAGAAGTAG TGCATGCCAA TCACCTGGCA AGGGGAACCA AAAGCCAACA 001040
001041 GATCGGAGAA TGCGGGTGAG GAACCTGAGA GCATTCCTTC TCTGCTAGGA AAACACTAGA AAGAAAGGTG GCTGTGATAT 001120
001121 AGGAATACTG CTTGACATAG CTGAGTGGTT TGGTTCCATG GGTCTTTGAT AAAAGTTTAG TATGTTTAGG GAGAGCACAT 001200
001201 TGGAATCCTC CTCTTCCATT TGCTTCTAAG GTTTTTCACT ACAGACATCT GATCCTCCCA ACAATCAGTG CCAAAACCGC 001280
001281 AGCTCGAGGC CAAACTAGAT TTATTGGGGA ACGACGGATG AAGGTTCCAC TTATATTAAT GATACTGATG GTTTAGATAA 001360
001361 GAGGATCCAG TTTTTTTGGG CGGGGGTGGG GCAGGCAGAA GAATTAATGT GTTGGGCTGT CAGAGAAGTA TTTGCATTTT 001440
001441 ACACAGATGG GTCTCACCAC CAGGATACTA GGTTTAACTA ACACTCCTCA ACAGTCAAAT GCACTTAAGA CTCATTAAAC 001520
001521 CAGCAGTTCT CCAAGTGTAG TACCCGGACC CAACAAGCAC TGTCATCACC TGGGAGCGTT AGGCCTGCAC ATTCTCAGGC 001600
001601 CTAGCCCAGC CCTACTGAAT CAGAAACTCC ATGGGTGGGG CCCAGATTTG TTTTAATAAT CCCTCCTGGT GATTCTGATG 001680
001681 CGTGCTAAGG CTTCAGAGAA CCCCCTCATT GAGCTAACAG TTACATAGTC TTCCCAACAG AACTGTGGTG AAAGAAGTCT 001760
001761 AATTCATTAA TTTATAGTTT TGCTTTCTCC CTCTCACTTT AGCTATAAGG TACAACAAGT GATATCTGTA ATTTTTGGCT 001840
001841 GCTCATTATC TACCTGCTCT TCAATACATT TACCACTTAT TCCTTACATT TAATCCATTA CAACCCTATG AACTGGTCAG 001920
001921 CCTAATTATC TAGATGAGGA AAAAAGGTAT CAAGAGGTTA GTAGTACAGA GTCAGTCAGC ATATGACGGG GTGGGATTCC 002000
002001 ATCACAGGTC TGTCTATCTC CAATGCCATT ATGTAATACA CAGATCAAGT AAATGTTATG TAAACTTATC AATCCAAAAG 002080
002081 TTGTTTCTAA CCCCTAAAGT GTTCTTTTAC TTACATCTGA AATACTTAGG ACCTGATTCA GACTCAGTAC TCCTGAGCAA 002160
002161 AAGGAATTAG CCTTTATTGA TGTAGAATTT CTATATAATA AAATGCACAG ATCTTGAAGT GTTCACATC
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Predicted Small Protein

Name NONHSAT069684_smProtein_53:184
Length 44
Molecular weight 4539.0266
Aromaticity 0.046511627907
Instability index 97.588372093
Isoelectric point 4.42047119141
Runs 7
Runs residual 0.0054873268879
Runs probability 0.0456633103692
Amino acid sequence MVPASERCRNSIEDMLGGGVPLACWNSEEAVGQRESSAPFSAV
Secondary structure LLLLLLLLHHHHHHHHLLLLLEEELLLHHHLLLLLLLLLLLLL
PRMN -
PiMo -