Difference between revisions of "ENST00000444042.2"
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[[Category:Overlapping(AS)]] | [[Category:Overlapping(AS)]] | ||
| − | [[Category:Antisense]][[Category:lnc-PDZK1IP1-2]][[Category:NONHSAG001360]][[Category:ENSG00000225506.2]] | + | [[Category:Antisense]][[Category:lnc-PDZK1IP1-2]][[Category:NONHSAG001360]][[Category:ENSG00000225506.2]][[Category:Transcripts]] |
Revision as of 11:40, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Name
CYP4A22-AS1
Characteristics
Spliced, up to 4 exons, ~920 nt transcript (Arom (2010)). Loci covers ~ 80kb and is antisense to CYP4A22 and CYP4Z1 (Arom (2010)).
Transcribed bidirectionally with PDZK1IP1-AS1, downstream from TAL1 and PDZK1IP1 on same strand (Arom (2010)).
In-vitro translation showed no sign of protein product (Arom (2010)).
Transcriptomic Nomeclature
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Function
CYP4A22-AS1 expression stimulates TAL1 gene expression (in MCF7 cells) (Arom (2010)).
Regulation
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Expression
Expressed and functionally characterized in MCF7 cells (Arom (2010)).
CYP4A22-AS1 identified as enriched in K562, HelaS3 and HepG2 nuclear fractions (Derrien (2012)).
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000444042.2 |
| Source |
Gencode19 |
| Same with |
lnc-PDZK1IP1-2:1,NONHSAT003050 |
| Classification |
overlapping(AS),antisense |
| Length |
921 nt |
| Genomic location |
chr1-:47562325..47644943 |
| Exon number |
4 |
| Exons |
47562325..47562849,47642707..47642741,47643843..47644121,47644862..47644943 |
| Genome context |
|
| Sequence |
000001 GAAGTTGAGC TTCAGGCGCG GCTCTTCCCC GTCACACTGG GACCGGACGC ATTTCCATGG CGTGGTCCCA GGAACCTCTC 000080
000081 AGAGTGAACT GAATTGGATG CAAGATCACG GTGCGTCAGA GCTAGCAAGA TCCTTAGGAT CATTTAGCCT GGTTTACTAA 000160 000161 TATTACACTA TGGAATTTAA GCCCAAGGAA TGGAGAGTAC CCGACGAGCG TTATGTAAGG AGTCGAGTGA GAAGTAAGCT 000240 000241 GGATGCTCTG CTTGGCTGGC AGGTACAGAA TGTGCCAGAC CCATCTGTAC CAGCCTGGAT CTCTTGAGGC ATCAGCACAA 000320 000321 TGGACCTGGC CACACCAGTT TATTCCACAC CGCTGAGGCT GGTCTTTGAG GAATCACCAC ACTGTCTTCC ACAATGCACC 000400 000401 ATGGAATACT ATGCAGACAT AAAAAGGAAT GAGATCATGT CGTTTGCAGG GACATGGATG GAGCTAGAAG CCATTATCCT 000480 000481 CAGAAAACTA ACACAGGAAC AGAAAACCAA ATACCACATG TTCTCACTTA TAAGTGGGAG CTGAATGATG AGAACACATG 000560 000561 GACACGTGGT GCGGGAACAA TACACCTGGG GCCTGTTGGA GGGTGGGGGC TGGGAGGAGG GAGAGCATCA AGAATAGCTA 000640 000641 ATGAGGCCAG GCACAGTGGC TCACGCCTGT AATCCTAGCA TTTTGGGAGG CTGAGGCGGG CAGATCATTT GAGGTCAGGA 000720 000721 GTTTGAGACC AGCCTGGCCA ATATGGTGAA ACCCCGTCTC TATTAAAAAT ACAAAAATAT TAGCCAGGCA TGGTGGCAAT 000800 000801 GCCCGTAGTC CCTGCAACTT GGGAGGCTGA GGCAGGAGAA TCGTTTGAAC CTGGGAGGTG GAGTTTGCAG TGAGCCAAGA 000880 000881 TCGCGCCACT GCACTCCAGC CTGGGCGACA GAGTGAGGCT C |
