Difference between revisions of "ENST00000427439.1"
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sequence = <dnaseq>AATAAAGACATAAAAAACTTAAATGGAGTTCACTCGAATTATATAGATCCTTATTGGTAAGTTCTGAATAAAATTCTGGTGGCAAGCTCCTTAAAGTTCCAATTCCAAGCACAGAGATGTTCATGGAAGGTTTTACATAACACGTGTAGAACCTGTCCATGGCTGGGTTTTCTTTTGTTCAGTTTTGGGTCTCAGCACCTGGAAGACTACCTGGCATATGAATTCCTGTGATCCGGTACATACAGAAAAATATCAAGAGAAGTTAAATTTTAAAATGATGGACCTTTTCCAATTAGATTACTTCTGATCAATACAATGTCTGATTTTTATAAGATGACAACTAAAATTCAAATTCGGATGTCAAAAAGGTTTAAATAACCCTCCCTCCGATCTCTGTCTTCTTCCTACTCTGTACTCTCTCTGGGGATCTCTTTACATCCCACAGCCATTGAATCTTAAAAGTAATACAAGAAATAATTGAATGAAATTTCCAAGGACTTCAGAATATAGATCACTTTTTTTCCCTAACATCTAGAACAGTATCTAGCGTATTGACAATATCCAATAATATTTGCTAAATAAATAAAGAAAAATGCACACTGAAGAGTCAACATCATAAATGAATAAAAACATATTCAAAAGTATATCATTCTGAAATTGTACAATGCATACAAATATTTGATGCTAAAAACTTCTACAAAGATAAAGAAGATCACATATGGGAGTTACAACATTTAGACTTCTGAAAGAAAATTAATTCCAACCTAGACTTCTATGCTCCATTTAAAAAATTAATCAGAAGACACAGATTAAGTAAAGCAACTTACAGATAGGTTAGATCTAAAAATATGTATTTGTGATACACCCTTCTGTAGGAAGATATACATCACCAAAATAATGGAATAAATAAACAAGACATAGGATTAATGAAAAATGATTACAACACAGGAGAGGTTGAAAAGAATTCCTGGAATAATGTTGAAGGGAAATCCTAAGACATCAGCCATTCTTCAAGTCTAGAAACCCCAAGGCTATTGAGAGCATGAAGACTAAGGAATGAATGTCTCCAGGAAACAAAAAAGGAACCAATGAATTCATGACACATTACCTGGTGAGACTGACCATAAGCAAACATAAACAAAACAATTTCCATAGGTATTTTATTGTTTGGAATGTAGCAATTTATGAAAAAGAAGAGACGAGTATTAACTCCAGTACAAACAAAGAGTTATTTGGGTAAGGGTGCAAATCTTAGTAAATGACTTGGTTCAGAAGTAAACAATATAACACAACTTTTAAAAAGTTGAGGGGTGAAGACTGAAGTGGTAATTTAAATACAAAATTCTGATACAATTTTATTGAGAGGAGGGAGAGAGGAGTGGAGAGAATTTGGTATCATGGTGAAGAAGTGCTAATTTTAATGGTGCATAAAAATAAGTCATTGGTATCAGTGATACATATTATTTTGTAATATGAAGACTGAAGAAAGAGAAAGGAATATTTTTCTATTTTATTTTGGTAAAAATTTTTATTTCTATTATCTCCCTCCTTTCAATAAAATTGTATCAAAATTTGTGTTTAAATTACAGTTCAGTGTCCCCTCTCCCTCTTTTGTCCCTGGGGGCCAGAGTTTTTATTATTATTTTGAGTTATTGAATTTTTAAAAACTAACACATATTAGTTTTTGAGATTTTTTTCTTGTTGTTCTTGGGTTATTGACAGCAAAGGGGTGGAGGAGGAGAGAGAAGATAAAATGAGCAAATAAAAAAATGGTAAAGTACACAA</dnaseq>| | sequence = <dnaseq>AATAAAGACATAAAAAACTTAAATGGAGTTCACTCGAATTATATAGATCCTTATTGGTAAGTTCTGAATAAAATTCTGGTGGCAAGCTCCTTAAAGTTCCAATTCCAAGCACAGAGATGTTCATGGAAGGTTTTACATAACACGTGTAGAACCTGTCCATGGCTGGGTTTTCTTTTGTTCAGTTTTGGGTCTCAGCACCTGGAAGACTACCTGGCATATGAATTCCTGTGATCCGGTACATACAGAAAAATATCAAGAGAAGTTAAATTTTAAAATGATGGACCTTTTCCAATTAGATTACTTCTGATCAATACAATGTCTGATTTTTATAAGATGACAACTAAAATTCAAATTCGGATGTCAAAAAGGTTTAAATAACCCTCCCTCCGATCTCTGTCTTCTTCCTACTCTGTACTCTCTCTGGGGATCTCTTTACATCCCACAGCCATTGAATCTTAAAAGTAATACAAGAAATAATTGAATGAAATTTCCAAGGACTTCAGAATATAGATCACTTTTTTTCCCTAACATCTAGAACAGTATCTAGCGTATTGACAATATCCAATAATATTTGCTAAATAAATAAAGAAAAATGCACACTGAAGAGTCAACATCATAAATGAATAAAAACATATTCAAAAGTATATCATTCTGAAATTGTACAATGCATACAAATATTTGATGCTAAAAACTTCTACAAAGATAAAGAAGATCACATATGGGAGTTACAACATTTAGACTTCTGAAAGAAAATTAATTCCAACCTAGACTTCTATGCTCCATTTAAAAAATTAATCAGAAGACACAGATTAAGTAAAGCAACTTACAGATAGGTTAGATCTAAAAATATGTATTTGTGATACACCCTTCTGTAGGAAGATATACATCACCAAAATAATGGAATAAATAAACAAGACATAGGATTAATGAAAAATGATTACAACACAGGAGAGGTTGAAAAGAATTCCTGGAATAATGTTGAAGGGAAATCCTAAGACATCAGCCATTCTTCAAGTCTAGAAACCCCAAGGCTATTGAGAGCATGAAGACTAAGGAATGAATGTCTCCAGGAAACAAAAAAGGAACCAATGAATTCATGACACATTACCTGGTGAGACTGACCATAAGCAAACATAAACAAAACAATTTCCATAGGTATTTTATTGTTTGGAATGTAGCAATTTATGAAAAAGAAGAGACGAGTATTAACTCCAGTACAAACAAAGAGTTATTTGGGTAAGGGTGCAAATCTTAGTAAATGACTTGGTTCAGAAGTAAACAATATAACACAACTTTTAAAAAGTTGAGGGGTGAAGACTGAAGTGGTAATTTAAATACAAAATTCTGATACAATTTTATTGAGAGGAGGGAGAGAGGAGTGGAGAGAATTTGGTATCATGGTGAAGAAGTGCTAATTTTAATGGTGCATAAAAATAAGTCATTGGTATCAGTGATACATATTATTTTGTAATATGAAGACTGAAGAAAGAGAAAGGAATATTTTTCTATTTTATTTTGGTAAAAATTTTTATTTCTATTATCTCCCTCCTTTCAATAAAATTGTATCAAAATTTGTGTTTAAATTACAGTTCAGTGTCCCCTCTCCCTCTTTTGTCCCTGGGGGCCAGAGTTTTTATTATTATTTTGAGTTATTGAATTTTTAAAAACTAACACATATTAGTTTTTGAGATTTTTTTCTTGTTGTTCTTGGGTTATTGACAGCAAAGGGGTGGAGGAGGAGAGAGAAGATAAAATGAGCAAATAAAAAAATGGTAAAGTACACAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000233410.1]][[Category:lnc-ATP6V1G3-4]] | + | [[Category:Intergenic]][[Category:ENSG00000233410.1]][[Category:lnc-ATP6V1G3-4]][[Category:Transcripts]] |
Latest revision as of 15:16, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000427439.1 |
Source |
Gencode19 |
Same with |
lnc-ATP6V1G3-4:1 |
Classification |
intergenic |
Length |
1785 nt |
Genomic location |
chr1-:198975169..198990166 |
Exon number |
3 |
Exons |
198975169..198976558,198977523..198977697,198989947..198990166 |
Genome context |
|
Sequence |
000001 AATAAAGACA TAAAAAACTT AAATGGAGTT CACTCGAATT ATATAGATCC TTATTGGTAA GTTCTGAATA AAATTCTGGT 000080
000081 GGCAAGCTCC TTAAAGTTCC AATTCCAAGC ACAGAGATGT TCATGGAAGG TTTTACATAA CACGTGTAGA ACCTGTCCAT 000160 000161 GGCTGGGTTT TCTTTTGTTC AGTTTTGGGT CTCAGCACCT GGAAGACTAC CTGGCATATG AATTCCTGTG ATCCGGTACA 000240 000241 TACAGAAAAA TATCAAGAGA AGTTAAATTT TAAAATGATG GACCTTTTCC AATTAGATTA CTTCTGATCA ATACAATGTC 000320 000321 TGATTTTTAT AAGATGACAA CTAAAATTCA AATTCGGATG TCAAAAAGGT TTAAATAACC CTCCCTCCGA TCTCTGTCTT 000400 000401 CTTCCTACTC TGTACTCTCT CTGGGGATCT CTTTACATCC CACAGCCATT GAATCTTAAA AGTAATACAA GAAATAATTG 000480 000481 AATGAAATTT CCAAGGACTT CAGAATATAG ATCACTTTTT TTCCCTAACA TCTAGAACAG TATCTAGCGT ATTGACAATA 000560 000561 TCCAATAATA TTTGCTAAAT AAATAAAGAA AAATGCACAC TGAAGAGTCA ACATCATAAA TGAATAAAAA CATATTCAAA 000640 000641 AGTATATCAT TCTGAAATTG TACAATGCAT ACAAATATTT GATGCTAAAA ACTTCTACAA AGATAAAGAA GATCACATAT 000720 000721 GGGAGTTACA ACATTTAGAC TTCTGAAAGA AAATTAATTC CAACCTAGAC TTCTATGCTC CATTTAAAAA ATTAATCAGA 000800 000801 AGACACAGAT TAAGTAAAGC AACTTACAGA TAGGTTAGAT CTAAAAATAT GTATTTGTGA TACACCCTTC TGTAGGAAGA 000880 000881 TATACATCAC CAAAATAATG GAATAAATAA ACAAGACATA GGATTAATGA AAAATGATTA CAACACAGGA GAGGTTGAAA 000960 000961 AGAATTCCTG GAATAATGTT GAAGGGAAAT CCTAAGACAT CAGCCATTCT TCAAGTCTAG AAACCCCAAG GCTATTGAGA 001040 001041 GCATGAAGAC TAAGGAATGA ATGTCTCCAG GAAACAAAAA AGGAACCAAT GAATTCATGA CACATTACCT GGTGAGACTG 001120 001121 ACCATAAGCA AACATAAACA AAACAATTTC CATAGGTATT TTATTGTTTG GAATGTAGCA ATTTATGAAA AAGAAGAGAC 001200 001201 GAGTATTAAC TCCAGTACAA ACAAAGAGTT ATTTGGGTAA GGGTGCAAAT CTTAGTAAAT GACTTGGTTC AGAAGTAAAC 001280 001281 AATATAACAC AACTTTTAAA AAGTTGAGGG GTGAAGACTG AAGTGGTAAT TTAAATACAA AATTCTGATA CAATTTTATT 001360 001361 GAGAGGAGGG AGAGAGGAGT GGAGAGAATT TGGTATCATG GTGAAGAAGT GCTAATTTTA ATGGTGCATA AAAATAAGTC 001440 001441 ATTGGTATCA GTGATACATA TTATTTTGTA ATATGAAGAC TGAAGAAAGA GAAAGGAATA TTTTTCTATT TTATTTTGGT 001520 001521 AAAAATTTTT ATTTCTATTA TCTCCCTCCT TTCAATAAAA TTGTATCAAA ATTTGTGTTT AAATTACAGT TCAGTGTCCC 001600 001601 CTCTCCCTCT TTTGTCCCTG GGGGCCAGAG TTTTTATTAT TATTTTGAGT TATTGAATTT TTAAAAACTA ACACATATTA 001680 001681 GTTTTTGAGA TTTTTTTCTT GTTGTTCTTG GGTTATTGAC AGCAAAGGGG TGGAGGAGGA GAGAGAAGAT AAAATGAGCA 001760 001761 AATAAAAAAA TGGTAAAGTA CACAA |
Predicted Small Protein
Name | ENST00000427439.1_smProtein_1472:1663 |
Length | 64 |
Molecular weight | 7768.8883 |
Aromaticity | 0.31746031746 |
Instability index | 86.0784126984 |
Isoelectric point | 9.30133056641 |
Runs | 13 |
Runs residual | 0.0613864593456 |
Runs probability | 0.0630290924408 |
Amino acid sequence | MKTEERERNIFLFYFGKNFYFYYLPPFNKIVSKFVFKLQFSVPSPSFVPGGQSFYYYFEL LNF |
Secondary structure | LLLHHHLLEEEEEEELLEEEEEEELLLLLEEELEEEEEEEELLLLLLLLLLLEEEEEEEE ELL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL LLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooo ooo |