Difference between revisions of "ENST00000441492.1"
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sequence = <dnaseq>GAAGGTGGGGTCTGCCGGACGCGTGTTCCTGCCACCAGGTGCCCGCTCCCCGCGAGGCCGGCTCAGGAGCAGGTAGAATGTAAACAATTGAAAAAAATCCCTTCCCAATCAGAATACCACCCACAGGACAACGAAGAAAACCTATCTTCAGTCCCCACCCACGAAATGCTGGGGGGTGGGGAGGACTGGAAAAGGAGTAAGGGGAGAGGAAGGGTGAGCAGCTGCAAGAAGTCTTTACACCTCTCTGCGGTTCCTGGTAAACGCGCTCATGTCCTGGAAGGAAGCCCGGTGCCAGCCAGCCTTCCTGAAAGACCAAGCCCGCGCCATCCGGCTTCCTCCAGTGGACGCCTGCAGGACCCAGGTGAGACACGGAACCGGTTGGGGACGCGAGCCAGGGATCCTGACCGGTTGGGGGCGGCGAGCAAGGGATCCTGACTTGGGGGCGTTGCCTCCCGGAATCCAAGCGGCCTTTTGCCCGGGTCTCCCGAGATGCATCGAAATTGAGCTCGTCCACACAGCCCCCTGACTGCGTGATGCCCTTTTCTGACTTAAAACATTCCTTGTACCTTTATTTACACGATCCAAGTTGCAGTGTGCCTAGATTTTCCTCCAAGGACAAAAATGTGAATAAAGCAATATTTTAGCCAAA</dnaseq>| | sequence = <dnaseq>GAAGGTGGGGTCTGCCGGACGCGTGTTCCTGCCACCAGGTGCCCGCTCCCCGCGAGGCCGGCTCAGGAGCAGGTAGAATGTAAACAATTGAAAAAAATCCCTTCCCAATCAGAATACCACCCACAGGACAACGAAGAAAACCTATCTTCAGTCCCCACCCACGAAATGCTGGGGGGTGGGGAGGACTGGAAAAGGAGTAAGGGGAGAGGAAGGGTGAGCAGCTGCAAGAAGTCTTTACACCTCTCTGCGGTTCCTGGTAAACGCGCTCATGTCCTGGAAGGAAGCCCGGTGCCAGCCAGCCTTCCTGAAAGACCAAGCCCGCGCCATCCGGCTTCCTCCAGTGGACGCCTGCAGGACCCAGGTGAGACACGGAACCGGTTGGGGACGCGAGCCAGGGATCCTGACCGGTTGGGGGCGGCGAGCAAGGGATCCTGACTTGGGGGCGTTGCCTCCCGGAATCCAAGCGGCCTTTTGCCCGGGTCTCCCGAGATGCATCGAAATTGAGCTCGTCCACACAGCCCCCTGACTGCGTGATGCCCTTTTCTGACTTAAAACATTCCTTGTACCTTTATTTACACGATCCAAGTTGCAGTGTGCCTAGATTTTCCTCCAAGGACAAAAATGTGAATAAAGCAATATTTTAGCCAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000223749.3]][[Category:lnc-PLAC1-1]] | + | [[Category:Intergenic]][[Category:ENSG00000223749.3]][[Category:lnc-PLAC1-1]][[Category:Transcripts]] |
Latest revision as of 15:42, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000441492.1 |
| Source |
Gencode19 |
| Same with |
lnc-PLAC1-1:3 |
| Classification |
intergenic |
| Length |
649 nt |
| Genomic location |
chrX-:133678456..133680653 |
| Exon number |
3 |
| Exons |
133678456..133678827,133679982..133680182,133680578..133680653 |
| Genome context |
|
| Sequence |
000001 GAAGGTGGGG TCTGCCGGAC GCGTGTTCCT GCCACCAGGT GCCCGCTCCC CGCGAGGCCG GCTCAGGAGC AGGTAGAATG 000080
000081 TAAACAATTG AAAAAAATCC CTTCCCAATC AGAATACCAC CCACAGGACA ACGAAGAAAA CCTATCTTCA GTCCCCACCC 000160 000161 ACGAAATGCT GGGGGGTGGG GAGGACTGGA AAAGGAGTAA GGGGAGAGGA AGGGTGAGCA GCTGCAAGAA GTCTTTACAC 000240 000241 CTCTCTGCGG TTCCTGGTAA ACGCGCTCAT GTCCTGGAAG GAAGCCCGGT GCCAGCCAGC CTTCCTGAAA GACCAAGCCC 000320 000321 GCGCCATCCG GCTTCCTCCA GTGGACGCCT GCAGGACCCA GGTGAGACAC GGAACCGGTT GGGGACGCGA GCCAGGGATC 000400 000401 CTGACCGGTT GGGGGCGGCG AGCAAGGGAT CCTGACTTGG GGGCGTTGCC TCCCGGAATC CAAGCGGCCT TTTGCCCGGG 000480 000481 TCTCCCGAGA TGCATCGAAA TTGAGCTCGT CCACACAGCC CCCTGACTGC GTGATGCCCT TTTCTGACTT AAAACATTCC 000560 000561 TTGTACCTTT ATTTACACGA TCCAAGTTGC AGTGTGCCTA GATTTTCCTC CAAGGACAAA AATGTGAATA AAGCAATATT 000640 000641 TTAGCCAAA |
Predicted Small Protein
| Name | ENST00000441492.1_smProtein_533:643 |
| Length | 37 |
| Molecular weight | 4185.7802 |
| Aromaticity | 0.138888888889 |
| Instability index | 52.15 |
| Isoelectric point | 8.97991943359 |
| Runs | 5 |
| Runs residual | 0.0415695415695 |
| Runs probability | 0.0300830242007 |
| Amino acid sequence | MPFSDLKHSLYLYLHDPSCSVPRFSSKDKNVNKAIF |
| Secondary structure | LLLLLLLLEEEEEELLLLLLLLLLLLLLLLHHHHLL |
| PRMN | - |
| PiMo | - |
