Difference between revisions of "ENST00000520913.1"
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sequence = <dnaseq>GTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAGGACTTCGCAGGTGAGCAGTAACGGAAATCAGCCCCGTTTATTCCTCCCAGCACCTGCCTTATCCAACTCCCCACGCTGTGGCTGAGTCCCAGCCTGCTATGGAAGCATCACTGGACTCCCATTGAACTCTGTGCAGATTCGCTGTTCGTAGACATGGTACCTGATGGACACCAAGCTACGTACAGCTTCAAGGCCCCTTCTTTCTTTGCTAATAAAAAATAAAAAATAAAA</dnaseq>| | sequence = <dnaseq>GTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAGGACTTCGCAGGTGAGCAGTAACGGAAATCAGCCCCGTTTATTCCTCCCAGCACCTGCCTTATCCAACTCCCCACGCTGTGGCTGAGTCCCAGCCTGCTATGGAAGCATCACTGGACTCCCATTGAACTCTGTGCAGATTCGCTGTTCGTAGACATGGTACCTGATGGACACCAAGCTACGTACAGCTTCAAGGCCCCTTCTTTCTTTGCTAATAAAAAATAAAAAATAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-MYC-2]][[Category:NONHSAG051258]] | + | [[Category:Intergenic]][[Category:lnc-MYC-2]][[Category:NONHSAG051258]][[Category:Transcripts]] |
Latest revision as of 16:58, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000520913.1 |
| Source |
Gencode19 |
| Same with |
lnc-MYC-2:15,NONHSAT147663 |
| Classification |
intergenic |
| Length |
584 nt |
| Genomic location |
chr8+:128902892..128944941 |
| Exon number |
2 |
| Exons |
128902892..128903244,128944711..128944941 |
| Genome context |
|
| Sequence |
000001 GTCAGCTGCA TGGAGCTTCG TTCAAGTATT TTCTGAGCCT GATGGATTTA CAGTGATCTT CAGTGGTCTG GGGAATAACG 000080
000081 CTGGTGGAAC CATGCACTGG AATGACACAC GCCCGGCACA TTTCAGGATA CTAAAAGTGG TTTTAAGGGA GGCTGTGGCT 000160 000161 GAATGCCTCA TGGATTCTTA CAGCTTGGAT GTCCATGGGG GACGAAGGAC TGCAGCTGGC TGAGAGGGTT GAGATCTCTG 000240 000241 TTTACTTAGA TCTCTGCCAA CTTCCTTTGG GTCTCCCTAT GGAATGTAAG ACCCCGACTC TTCCTGGTGA AGCATCTGAT 000320 000321 GCACGTTCCA TCCGGCGCTC AGCTGGGCTT GAGGACTTCG CAGGTGAGCA GTAACGGAAA TCAGCCCCGT TTATTCCTCC 000400 000401 CAGCACCTGC CTTATCCAAC TCCCCACGCT GTGGCTGAGT CCCAGCCTGC TATGGAAGCA TCACTGGACT CCCATTGAAC 000480 000481 TCTGTGCAGA TTCGCTGTTC GTAGACATGG TACCTGATGG ACACCAAGCT ACGTACAGCT TCAAGGCCCC TTCTTTCTTT 000560 000561 GCTAATAAAA AATAAAAAAT AAAA |
Predicted Small Protein
| Name | ENST00000520913.1_smProtein_188:373 |
| Length | 62 |
| Molecular weight | 6596.4344 |
| Aromaticity | 0.0327868852459 |
| Instability index | 64.9114754098 |
| Isoelectric point | 4.25067138672 |
| Runs | 10 |
| Runs residual | 0.0111173921236 |
| Runs probability | 0.0290496378731 |
| Amino acid sequence | MSMGDEGLQLAERVEISVYLDLCQLPLGLPMECKTPTLPGEASDARSIRRSAGLEDFAGE Q |
| Secondary structure | LLLLHHHHLHHHEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLHHHLLL L |
| PRMN | - |
| PiMo | - |
