Difference between revisions of "NONHSAT000949"
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sequence = <dnaseq>GTTCATGGCAGCCTTACTTAGAGGCACAATAGATAGTTGGGTTTTCCAAATTTATGAGTTCAGACATAGTCATGAAGAGGGAACAAATACTCTACAGTGGGCCCTGCTGCCAGATGACTTCGCCCAGCTGTCAGCTAATGTAAGTGTTCCGGGCATGTTTAGATATGTTAGGTGTATGAAATTCATTTTTACTTAAAGCCTTTTCAACTTAAAAATGGGCTTACCCGGACGTAATCCCATCATAAGTCAAGGAGCATCTGTACTTGGAAGAATATAAAACTTCTCCATCACACTACGGAGTCCTGCCACTTCTCTCTTTTCCTGTTGTATTTGGTTACCATCTTCCCTGGTGACAAGGAAGATACTGCCACCAGCAATTACTCAGTGAGGCAAAGATATTAAAGAGGAAATTTCCATTAGGTAAATAACTGTGAAAGA</dnaseq>| | sequence = <dnaseq>GTTCATGGCAGCCTTACTTAGAGGCACAATAGATAGTTGGGTTTTCCAAATTTATGAGTTCAGACATAGTCATGAAGAGGGAACAAATACTCTACAGTGGGCCCTGCTGCCAGATGACTTCGCCCAGCTGTCAGCTAATGTAAGTGTTCCGGGCATGTTTAGATATGTTAGGTGTATGAAATTCATTTTTACTTAAAGCCTTTTCAACTTAAAAATGGGCTTACCCGGACGTAATCCCATCATAAGTCAAGGAGCATCTGTACTTGGAAGAATATAAAACTTCTCCATCACACTACGGAGTCCTGCCACTTCTCTCTTTTCCTGTTGTATTTGGTTACCATCTTCCCTGGTGACAAGGAAGATACTGCCACCAGCAATTACTCAGTGAGGCAAAGATATTAAAGAGGAAATTTCCATTAGGTAAATAACTGTGAAAGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]][[Category:Transcripts]] | + | [[Category:Intronic(S)]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:15, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT000949 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
438 nt |
| Genomic location |
chr1+:12510353..12511049 |
| Exon number |
2 |
| Exons |
12510353..12510421,12510681..12511049 |
| Genome context |
|
| Sequence |
000001 GTTCATGGCA GCCTTACTTA GAGGCACAAT AGATAGTTGG GTTTTCCAAA TTTATGAGTT CAGACATAGT CATGAAGAGG 000080
000081 GAACAAATAC TCTACAGTGG GCCCTGCTGC CAGATGACTT CGCCCAGCTG TCAGCTAATG TAAGTGTTCC GGGCATGTTT 000160 000161 AGATATGTTA GGTGTATGAA ATTCATTTTT ACTTAAAGCC TTTTCAACTT AAAAATGGGC TTACCCGGAC GTAATCCCAT 000240 000241 CATAAGTCAA GGAGCATCTG TACTTGGAAG AATATAAAAC TTCTCCATCA CACTACGGAG TCCTGCCACT TCTCTCTTTT 000320 000321 CCTGTTGTAT TTGGTTACCA TCTTCCCTGG TGACAAGGAA GATACTGCCA CCAGCAATTA CTCAGTGAGG CAAAGATATT 000400 000401 AAAGAGGAAA TTTCCATTAG GTAAATAACT GTGAAAGA |
Predicted Small Protein
| Name | NONHSAT000949_smProtein_53:142 |
| Length | 30 |
| Molecular weight | 3267.8817 |
| Aromaticity | 0.0344827586207 |
| Instability index | 77.2862068966 |
| Isoelectric point | 5.81597900391 |
| Runs | 6 |
| Runs residual | 0.0073275862069 |
| Runs probability | 0.00853794971442 |
| Amino acid sequence | MSSDIVMKREQILYSGPCCQMTSPSCQLM |
| Secondary structure | LLLHHHLHHHHEEELLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
