Difference between revisions of "NONHSAT005149"
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sequence = <dnaseq>GTATCTGCTTTGTCCCAGTTCTTCATCCTGCTGCTGATTATCCTCCTTGCTGAGGTGACCTTGGCCATCCTGCTCTTTGTATATGAACAGAAGCTGAATGAGTATGTGGCTAAGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAATAGCACCAAGGCAGCGTGGGACTCCATCCAGTCATTTGTGTTGGGGATGTCCTTTGCACTGACCCTGAACTGCCAGATTGACAAAACCAGCCAGACCATAGGGCTATGATCTGCAGTAGTCCTGTGGTGAAGAGACTTGTTTCATCTCCGGAAATGCAAAACCATTTATAGCATGAAGCCCTACATGATCACTGCAGGATGATCCTCCTCCCATCCTTTCCCTTTTTAGGTCCCTGTCTTATACAACCAGAGAAGTGGGTGTTGGCCAGGCACATCCCATCTCAGGCAGCAAGACAATCTTTCACTCACTGACGGCAGCAGCCATGTCTCTCAAAGTGGTGAAACTAATATCTGAGCATCTTTTAGACAAGAGAGGCAAAGACAAACTGGATTTAATGGCCCAACATCAAAGGGTGAACCCAGGATATGAATTTTTGCATCTTCCCATTGTCGAATTAGTCTCCAGCCTCTAAATAATGCCCAGTCTTCTCCCCAAAGTCAAGCAAGAGACTAGTTGAAGGGAGTTCTGGGGCCAGGCTCACTGGACCATTGTCACAACCCTCTGTTTCTCTTTGACTAAGTGCCCTGGCTACAGGAATTACACAGTTCTCTTTCTCCAAAGGGCAAGATCTCATTTCAATTTCTTTATTAGAGGGCCTTATTGATGTGTTCTAAGTCTTTCCAGAAAAAAACTATCCAGTGATTTATATCCTGATTTCAACCAGTCACTTAGCTGATAATCACAGTAAGAAGACTTCTGGTATT</dnaseq>| | sequence = <dnaseq>GTATCTGCTTTGTCCCAGTTCTTCATCCTGCTGCTGATTATCCTCCTTGCTGAGGTGACCTTGGCCATCCTGCTCTTTGTATATGAACAGAAGCTGAATGAGTATGTGGCTAAGGGTCTGACCGACAGCATCCACCGTTACCACTCAGACAATAGCACCAAGGCAGCGTGGGACTCCATCCAGTCATTTGTGTTGGGGATGTCCTTTGCACTGACCCTGAACTGCCAGATTGACAAAACCAGCCAGACCATAGGGCTATGATCTGCAGTAGTCCTGTGGTGAAGAGACTTGTTTCATCTCCGGAAATGCAAAACCATTTATAGCATGAAGCCCTACATGATCACTGCAGGATGATCCTCCTCCCATCCTTTCCCTTTTTAGGTCCCTGTCTTATACAACCAGAGAAGTGGGTGTTGGCCAGGCACATCCCATCTCAGGCAGCAAGACAATCTTTCACTCACTGACGGCAGCAGCCATGTCTCTCAAAGTGGTGAAACTAATATCTGAGCATCTTTTAGACAAGAGAGGCAAAGACAAACTGGATTTAATGGCCCAACATCAAAGGGTGAACCCAGGATATGAATTTTTGCATCTTCCCATTGTCGAATTAGTCTCCAGCCTCTAAATAATGCCCAGTCTTCTCCCCAAAGTCAAGCAAGAGACTAGTTGAAGGGAGTTCTGGGGCCAGGCTCACTGGACCATTGTCACAACCCTCTGTTTCTCTTTGACTAAGTGCCCTGGCTACAGGAATTACACAGTTCTCTTTCTCCAAAGGGCAAGATCTCATTTCAATTTCTTTATTAGAGGGCCTTATTGATGTGTTCTAAGTCTTTCCAGAAAAAAACTATCCAGTGATTTATATCCTGATTTCAACCAGTCACTTAGCTGATAATCACAGTAAGAAGACTTCTGGTATT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG002391]] | + | [[Category:Sense]][[Category:NONHSAG002391]][[Category:Transcripts]] |
Latest revision as of 19:35, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT005149 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
917 nt |
| Genomic location |
chr1+:111436931..111442473 |
| Exon number |
3 |
| Exons |
111436931..111437023,111437582..111437677,111441746..111442473 |
| Genome context |
|
| Sequence |
000001 GTATCTGCTT TGTCCCAGTT CTTCATCCTG CTGCTGATTA TCCTCCTTGC TGAGGTGACC TTGGCCATCC TGCTCTTTGT 000080
000081 ATATGAACAG AAGCTGAATG AGTATGTGGC TAAGGGTCTG ACCGACAGCA TCCACCGTTA CCACTCAGAC AATAGCACCA 000160 000161 AGGCAGCGTG GGACTCCATC CAGTCATTTG TGTTGGGGAT GTCCTTTGCA CTGACCCTGA ACTGCCAGAT TGACAAAACC 000240 000241 AGCCAGACCA TAGGGCTATG ATCTGCAGTA GTCCTGTGGT GAAGAGACTT GTTTCATCTC CGGAAATGCA AAACCATTTA 000320 000321 TAGCATGAAG CCCTACATGA TCACTGCAGG ATGATCCTCC TCCCATCCTT TCCCTTTTTA GGTCCCTGTC TTATACAACC 000400 000401 AGAGAAGTGG GTGTTGGCCA GGCACATCCC ATCTCAGGCA GCAAGACAAT CTTTCACTCA CTGACGGCAG CAGCCATGTC 000480 000481 TCTCAAAGTG GTGAAACTAA TATCTGAGCA TCTTTTAGAC AAGAGAGGCA AAGACAAACT GGATTTAATG GCCCAACATC 000560 000561 AAAGGGTGAA CCCAGGATAT GAATTTTTGC ATCTTCCCAT TGTCGAATTA GTCTCCAGCC TCTAAATAAT GCCCAGTCTT 000640 000641 CTCCCCAAAG TCAAGCAAGA GACTAGTTGA AGGGAGTTCT GGGGCCAGGC TCACTGGACC ATTGTCACAA CCCTCTGTTT 000720 000721 CTCTTTGACT AAGTGCCCTG GCTACAGGAA TTACACAGTT CTCTTTCTCC AAAGGGCAAG ATCTCATTTC AATTTCTTTA 000800 000801 TTAGAGGGCC TTATTGATGT GTTCTAAGTC TTTCCAGAAA AAAACTATCC AGTGATTTAT ATCCTGATTT CAACCAGTCA 000880 000881 CTTAGCTGAT AATCACAGTA AGAAGACTTC TGGTATT |
Predicted Small Protein
| Name | NONHSAT005149_smProtein_350:463 |
| Length | 38 |
| Molecular weight | 4230.998 |
| Aromaticity | 0.108108108108 |
| Instability index | 90.327027027 |
| Isoelectric point | 9.49700927734 |
| Runs | 7 |
| Runs residual | 0.009422266303 |
| Runs probability | 0.0378782143488 |
| Amino acid sequence | MILLPSFPFLGPCLIQPEKWVLARHIPSQAARQSFTH |
| Secondary structure | LEELLLLLLLLLLLLLLHHHHHHHLLHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
