Difference between revisions of "NONHSAT006489"
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sequence = <dnaseq>CTCAGGAACAGCCTTCTCCTGCCTCCTCTGCACCTGGACAACTCAACTCCTGCCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCACCCAAGTGTCCCTCACCCAAGTGTCCCCCAAAGAGCCCAGTACAGTGTCTGCCTCCAGCTTCCTCTGGCTGTGCCCCAAGCTCTGGGGGCTGTGGCCCTAGCTCCGAGGGCGGCTGCTTCCTGAACCACCACAGGCGCCACCACCGATGCCGGCGCCAGAGGCCCAACTCCTGTGACAGGGGCAGTGGTCAGCAAGGCGGGGGCTCTGGCTGCGGCCATGGCTCTGGAGGCTGCTGCTGACCTGGATCCTGATGCTGAGACAAGCGATTTTGGAGGAAACAAGAATCCCAAGGGCCCAGGAAAACCCCATCTTGATGCATGAGTTCCCAGATACCCTCTTCTGGCTTTCACAGGCTGAGCTAGGGGTTTTCCTGTGGAAGGTCTGAGCTCTCCCCAGAAGGCACTTCCTGTCTGATGTCCAGGATGTCACATGTTCCCTTACCCCTGTACCTGTGAAGGATTGGCAGTGCTTGTGCCTGACCTCATCAAAAAATAAAGCTCCTTGTCCTCATTAAAAAAAA</dnaseq>| | sequence = <dnaseq>CTCAGGAACAGCCTTCTCCTGCCTCCTCTGCACCTGGACAACTCAACTCCTGCCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCACCCAAGTGTCCCTCACCCAAGTGTCCCCCAAAGAGCCCAGTACAGTGTCTGCCTCCAGCTTCCTCTGGCTGTGCCCCAAGCTCTGGGGGCTGTGGCCCTAGCTCCGAGGGCGGCTGCTTCCTGAACCACCACAGGCGCCACCACCGATGCCGGCGCCAGAGGCCCAACTCCTGTGACAGGGGCAGTGGTCAGCAAGGCGGGGGCTCTGGCTGCGGCCATGGCTCTGGAGGCTGCTGCTGACCTGGATCCTGATGCTGAGACAAGCGATTTTGGAGGAAACAAGAATCCCAAGGGCCCAGGAAAACCCCATCTTGATGCATGAGTTCCCAGATACCCTCTTCTGGCTTTCACAGGCTGAGCTAGGGGTTTTCCTGTGGAAGGTCTGAGCTCTCCCCAGAAGGCACTTCCTGTCTGATGTCCAGGATGTCACATGTTCCCTTACCCCTGTACCTGTGAAGGATTGGCAGTGCTTGTGCCTGACCTCATCAAAAAATAAAGCTCCTTGTCCTCATTAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG002954]] | + | [[Category:Sense]][[Category:NONHSAG002954]][[Category:Transcripts]] |
Latest revision as of 19:41, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT006489 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
617 nt |
| Genomic location |
chr1-:152551505..152552980 |
| Exon number |
3 |
| Exons |
152551505..152551511,152551860..152552433,152552945..152552980 |
| Genome context |
|
| Sequence |
000001 CTCAGGAACA GCCTTCTCCT GCCTCCTCTG CACCTGGACA ACTCAACTCC TGCCAAGATG TCCTGCCAGC AGAACCAGCA 000080
000081 GCAGTGCCAA CCCCCACCCA AGTGTCCCTC ACCCAAGTGT CCCCCAAAGA GCCCAGTACA GTGTCTGCCT CCAGCTTCCT 000160 000161 CTGGCTGTGC CCCAAGCTCT GGGGGCTGTG GCCCTAGCTC CGAGGGCGGC TGCTTCCTGA ACCACCACAG GCGCCACCAC 000240 000241 CGATGCCGGC GCCAGAGGCC CAACTCCTGT GACAGGGGCA GTGGTCAGCA AGGCGGGGGC TCTGGCTGCG GCCATGGCTC 000320 000321 TGGAGGCTGC TGCTGACCTG GATCCTGATG CTGAGACAAG CGATTTTGGA GGAAACAAGA ATCCCAAGGG CCCAGGAAAA 000400 000401 CCCCATCTTG ATGCATGAGT TCCCAGATAC CCTCTTCTGG CTTTCACAGG CTGAGCTAGG GGTTTTCCTG TGGAAGGTCT 000480 000481 GAGCTCTCCC CAGAAGGCAC TTCCTGTCTG ATGTCCAGGA TGTCACATGT TCCCTTACCC CTGTACCTGT GAAGGATTGG 000560 000561 CAGTGCTTGT GCCTGACCTC ATCAAAAAAT AAAGCTCCTT GTCCTCATTA AAAAAAA |
Predicted Small Protein
| Name | NONHSAT006489_smProtein_347:481 |
| Length | 45 |
| Molecular weight | 5268.1185 |
| Aromaticity | 0.113636363636 |
| Instability index | 58.9454545455 |
| Isoelectric point | 5.05389404297 |
| Runs | 7 |
| Runs residual | 0.00401069518717 |
| Runs probability | 0.0368435662553 |
| Amino acid sequence | MLRQAILEETRIPRAQENPILMHEFPDTLFWLSQAELGVFLWKV |
| Secondary structure | LHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLEEL |
| PRMN | - |
| PiMo | - |
