Difference between revisions of "NONHSAT009376"

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sequence = <dnaseq>TGGACGGCGACCCTGGGCTTTCGGGAGAAAGCCAGAGGGGCAGGGTTCTGGAAGGTTCCCTGGCGGCTGGGGTGCGGTGCGGGCTGAAATCCGAGCAGGAGCTGGGCGCGGCCCTCGGGGACCGACTATGGGGGACGGCGCCGCGGGAGTGGGGCAAGTGCGGGCCTGGACCCTTGGGGCCACCGCGTCAGCAGTCGGCGGGGCCGTGGGAGGGACGGTGCCCGCCCGCTGTGAAGGGCGGTGGCCCTTCTAGGGTCAGGCCAAGCGCAGAGGCCTGAAGGTCACCGGGTGAGGAGCCAGCGCGGGTGCCTCAGAAGCCAAGCGCCCCGTCCCGAGCCCTGCGCGAACCAGTATGACCTTCCAGGAACCAGATGAGAGCTGCGTTTTCAAGAAGCAGTGCCAGACACCTTGGGAAATCGACACTCTCCTGTCCTTGGGTGGGGGTGGGGGTCCTGGAAAGAAGCTCCGTCAGCGTAAAGTGAACTCTTAGCTTTGACTTTGCAGAGGGATCCGTTGTGTCACAGTGACCCGCATTCCTGTCATTGGTGTGGTGTGTTTCACAGCCATTGCCTCCCTAGGTAGATTGTAAAACGGCGTTCGTAGAGCCTTTGACCTCATAATATTATGTTGGAAATTACACGATAGTAAACATAATGATAAATGGGGAATGTTAAATGGTAGTATGGGAACATTTTCTAATGGTTGCATCCTTAAAATTTTCTGTTTCAAGTTTTTAAAGGCTATAGCCTTAAAAAAAGCTGACTGTAGGAAAATGGTGGAAAGAGTCGTGGAATAAAGGTAGCTTTGGGGATTATGACGTGAATAAATGACAGAAATTA</dnaseq>|
 
sequence = <dnaseq>TGGACGGCGACCCTGGGCTTTCGGGAGAAAGCCAGAGGGGCAGGGTTCTGGAAGGTTCCCTGGCGGCTGGGGTGCGGTGCGGGCTGAAATCCGAGCAGGAGCTGGGCGCGGCCCTCGGGGACCGACTATGGGGGACGGCGCCGCGGGAGTGGGGCAAGTGCGGGCCTGGACCCTTGGGGCCACCGCGTCAGCAGTCGGCGGGGCCGTGGGAGGGACGGTGCCCGCCCGCTGTGAAGGGCGGTGGCCCTTCTAGGGTCAGGCCAAGCGCAGAGGCCTGAAGGTCACCGGGTGAGGAGCCAGCGCGGGTGCCTCAGAAGCCAAGCGCCCCGTCCCGAGCCCTGCGCGAACCAGTATGACCTTCCAGGAACCAGATGAGAGCTGCGTTTTCAAGAAGCAGTGCCAGACACCTTGGGAAATCGACACTCTCCTGTCCTTGGGTGGGGGTGGGGGTCCTGGAAAGAAGCTCCGTCAGCGTAAAGTGAACTCTTAGCTTTGACTTTGCAGAGGGATCCGTTGTGTCACAGTGACCCGCATTCCTGTCATTGGTGTGGTGTGTTTCACAGCCATTGCCTCCCTAGGTAGATTGTAAAACGGCGTTCGTAGAGCCTTTGACCTCATAATATTATGTTGGAAATTACACGATAGTAAACATAATGATAAATGGGGAATGTTAAATGGTAGTATGGGAACATTTTCTAATGGTTGCATCCTTAAAATTTTCTGTTTCAAGTTTTTAAAGGCTATAGCCTTAAAAAAAGCTGACTGTAGGAAAATGGTGGAAAGAGTCGTGGAATAAAGGTAGCTTTGGGGATTATGACGTGAATAAATGACAGAAATTA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG004235]]
+
[[Category:Intergenic]][[Category:NONHSAG004235]][[Category:Transcripts]]

Latest revision as of 19:53, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT009376

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

839 nt

Genomic location

chr1-:212731175..212732013

Exon number

1

Exons

212731175..212732013

Genome context

Sequence
000001 TGGACGGCGA CCCTGGGCTT TCGGGAGAAA GCCAGAGGGG CAGGGTTCTG GAAGGTTCCC TGGCGGCTGG GGTGCGGTGC 000080
000081 GGGCTGAAAT CCGAGCAGGA GCTGGGCGCG GCCCTCGGGG ACCGACTATG GGGGACGGCG CCGCGGGAGT GGGGCAAGTG 000160
000161 CGGGCCTGGA CCCTTGGGGC CACCGCGTCA GCAGTCGGCG GGGCCGTGGG AGGGACGGTG CCCGCCCGCT GTGAAGGGCG 000240
000241 GTGGCCCTTC TAGGGTCAGG CCAAGCGCAG AGGCCTGAAG GTCACCGGGT GAGGAGCCAG CGCGGGTGCC TCAGAAGCCA 000320
000321 AGCGCCCCGT CCCGAGCCCT GCGCGAACCA GTATGACCTT CCAGGAACCA GATGAGAGCT GCGTTTTCAA GAAGCAGTGC 000400
000401 CAGACACCTT GGGAAATCGA CACTCTCCTG TCCTTGGGTG GGGGTGGGGG TCCTGGAAAG AAGCTCCGTC AGCGTAAAGT 000480
000481 GAACTCTTAG CTTTGACTTT GCAGAGGGAT CCGTTGTGTC ACAGTGACCC GCATTCCTGT CATTGGTGTG GTGTGTTTCA 000560
000561 CAGCCATTGC CTCCCTAGGT AGATTGTAAA ACGGCGTTCG TAGAGCCTTT GACCTCATAA TATTATGTTG GAAATTACAC 000640
000641 GATAGTAAAC ATAATGATAA ATGGGGAATG TTAAATGGTA GTATGGGAAC ATTTTCTAAT GGTTGCATCC TTAAAATTTT 000720
000721 CTGTTTCAAG TTTTTAAAGG CTATAGCCTT AAAAAAAGCT GACTGTAGGA AAATGGTGGA AAGAGTCGTG GAATAAAGGT 000800
000801 AGCTTTGGGG ATTATGACGT GAATAAATGA CAGAAATTA
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Predicted Small Protein

Name NONHSAT009376_smProtein_371:481
Length 37
Molecular weight 3847.4315
Aromaticity 0.0555555555556
Instability index 56.8111111111
Isoelectric point 11.5552368164
Runs 7
Runs residual 0.013986013986
Runs probability 0.0382567441392
Amino acid sequence MRAAFSRSSARHLGKSTLSCPWVGVGVLERSSVSVK
Secondary structure LLEEEELHHHHHLLLLLLLLLLEEEEEEEEEEEEEL
PRMN -
PiMo -