Difference between revisions of "NONHSAT009376"
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sequence = <dnaseq>TGGACGGCGACCCTGGGCTTTCGGGAGAAAGCCAGAGGGGCAGGGTTCTGGAAGGTTCCCTGGCGGCTGGGGTGCGGTGCGGGCTGAAATCCGAGCAGGAGCTGGGCGCGGCCCTCGGGGACCGACTATGGGGGACGGCGCCGCGGGAGTGGGGCAAGTGCGGGCCTGGACCCTTGGGGCCACCGCGTCAGCAGTCGGCGGGGCCGTGGGAGGGACGGTGCCCGCCCGCTGTGAAGGGCGGTGGCCCTTCTAGGGTCAGGCCAAGCGCAGAGGCCTGAAGGTCACCGGGTGAGGAGCCAGCGCGGGTGCCTCAGAAGCCAAGCGCCCCGTCCCGAGCCCTGCGCGAACCAGTATGACCTTCCAGGAACCAGATGAGAGCTGCGTTTTCAAGAAGCAGTGCCAGACACCTTGGGAAATCGACACTCTCCTGTCCTTGGGTGGGGGTGGGGGTCCTGGAAAGAAGCTCCGTCAGCGTAAAGTGAACTCTTAGCTTTGACTTTGCAGAGGGATCCGTTGTGTCACAGTGACCCGCATTCCTGTCATTGGTGTGGTGTGTTTCACAGCCATTGCCTCCCTAGGTAGATTGTAAAACGGCGTTCGTAGAGCCTTTGACCTCATAATATTATGTTGGAAATTACACGATAGTAAACATAATGATAAATGGGGAATGTTAAATGGTAGTATGGGAACATTTTCTAATGGTTGCATCCTTAAAATTTTCTGTTTCAAGTTTTTAAAGGCTATAGCCTTAAAAAAAGCTGACTGTAGGAAAATGGTGGAAAGAGTCGTGGAATAAAGGTAGCTTTGGGGATTATGACGTGAATAAATGACAGAAATTA</dnaseq>| | sequence = <dnaseq>TGGACGGCGACCCTGGGCTTTCGGGAGAAAGCCAGAGGGGCAGGGTTCTGGAAGGTTCCCTGGCGGCTGGGGTGCGGTGCGGGCTGAAATCCGAGCAGGAGCTGGGCGCGGCCCTCGGGGACCGACTATGGGGGACGGCGCCGCGGGAGTGGGGCAAGTGCGGGCCTGGACCCTTGGGGCCACCGCGTCAGCAGTCGGCGGGGCCGTGGGAGGGACGGTGCCCGCCCGCTGTGAAGGGCGGTGGCCCTTCTAGGGTCAGGCCAAGCGCAGAGGCCTGAAGGTCACCGGGTGAGGAGCCAGCGCGGGTGCCTCAGAAGCCAAGCGCCCCGTCCCGAGCCCTGCGCGAACCAGTATGACCTTCCAGGAACCAGATGAGAGCTGCGTTTTCAAGAAGCAGTGCCAGACACCTTGGGAAATCGACACTCTCCTGTCCTTGGGTGGGGGTGGGGGTCCTGGAAAGAAGCTCCGTCAGCGTAAAGTGAACTCTTAGCTTTGACTTTGCAGAGGGATCCGTTGTGTCACAGTGACCCGCATTCCTGTCATTGGTGTGGTGTGTTTCACAGCCATTGCCTCCCTAGGTAGATTGTAAAACGGCGTTCGTAGAGCCTTTGACCTCATAATATTATGTTGGAAATTACACGATAGTAAACATAATGATAAATGGGGAATGTTAAATGGTAGTATGGGAACATTTTCTAATGGTTGCATCCTTAAAATTTTCTGTTTCAAGTTTTTAAAGGCTATAGCCTTAAAAAAAGCTGACTGTAGGAAAATGGTGGAAAGAGTCGTGGAATAAAGGTAGCTTTGGGGATTATGACGTGAATAAATGACAGAAATTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG004235]] | + | [[Category:Intergenic]][[Category:NONHSAG004235]][[Category:Transcripts]] |
Latest revision as of 19:53, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009376 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
839 nt |
Genomic location |
chr1-:212731175..212732013 |
Exon number |
1 |
Exons |
212731175..212732013 |
Genome context |
|
Sequence |
000001 TGGACGGCGA CCCTGGGCTT TCGGGAGAAA GCCAGAGGGG CAGGGTTCTG GAAGGTTCCC TGGCGGCTGG GGTGCGGTGC 000080
000081 GGGCTGAAAT CCGAGCAGGA GCTGGGCGCG GCCCTCGGGG ACCGACTATG GGGGACGGCG CCGCGGGAGT GGGGCAAGTG 000160 000161 CGGGCCTGGA CCCTTGGGGC CACCGCGTCA GCAGTCGGCG GGGCCGTGGG AGGGACGGTG CCCGCCCGCT GTGAAGGGCG 000240 000241 GTGGCCCTTC TAGGGTCAGG CCAAGCGCAG AGGCCTGAAG GTCACCGGGT GAGGAGCCAG CGCGGGTGCC TCAGAAGCCA 000320 000321 AGCGCCCCGT CCCGAGCCCT GCGCGAACCA GTATGACCTT CCAGGAACCA GATGAGAGCT GCGTTTTCAA GAAGCAGTGC 000400 000401 CAGACACCTT GGGAAATCGA CACTCTCCTG TCCTTGGGTG GGGGTGGGGG TCCTGGAAAG AAGCTCCGTC AGCGTAAAGT 000480 000481 GAACTCTTAG CTTTGACTTT GCAGAGGGAT CCGTTGTGTC ACAGTGACCC GCATTCCTGT CATTGGTGTG GTGTGTTTCA 000560 000561 CAGCCATTGC CTCCCTAGGT AGATTGTAAA ACGGCGTTCG TAGAGCCTTT GACCTCATAA TATTATGTTG GAAATTACAC 000640 000641 GATAGTAAAC ATAATGATAA ATGGGGAATG TTAAATGGTA GTATGGGAAC ATTTTCTAAT GGTTGCATCC TTAAAATTTT 000720 000721 CTGTTTCAAG TTTTTAAAGG CTATAGCCTT AAAAAAAGCT GACTGTAGGA AAATGGTGGA AAGAGTCGTG GAATAAAGGT 000800 000801 AGCTTTGGGG ATTATGACGT GAATAAATGA CAGAAATTA |
Predicted Small Protein
Name | NONHSAT009376_smProtein_371:481 |
Length | 37 |
Molecular weight | 3847.4315 |
Aromaticity | 0.0555555555556 |
Instability index | 56.8111111111 |
Isoelectric point | 11.5552368164 |
Runs | 7 |
Runs residual | 0.013986013986 |
Runs probability | 0.0382567441392 |
Amino acid sequence | MRAAFSRSSARHLGKSTLSCPWVGVGVLERSSVSVK |
Secondary structure | LLEEEELHHHHHLLLLLLLLLLEEEEEEEEEEEEEL |
PRMN | - |
PiMo | - |