Difference between revisions of "NONHSAT011605"
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sequence = <dnaseq>AAACAGCTCCTGCGCGCCGCCGTGTCCACCCCTCCAGACGCTGACTCCCTTCTCCTGGCGCCGAGTCTGGCTCGAGGGGCCGCACATGGCGCCTCAAAGGGCCCAGTTGGGAGTCGGGATTCGCAAGGCAGTAAATCAACCTCAAAGGAAAGCTGTATACCTGCACAAGTGGTGGCTGCCATTGATGTCAACACTGTCGCTAATGAAGTATACAAGTATAATTTTCCTCACACACAGTTACTTGCCAAGACGATTGAAttacaTACTGTagagtaaatgatagctaccgaagacagagtgatccgtgataaatatcattaatgcctctgaagaggagaatgactccagtggaacaaaaactcttaataaaaatagataaaaatttttctagaatgaaATTTACaatataacatccatgagcccttctggaacagatgactgcatcacttaatctagctgagcaagagatgaatcaaagtagaaaacccaggaatgaagctgccgtgttaggaggaAAACTATGGTTAGAAAATAGCTGAAAATGTTGTAAAGCTTTGCAGTGTAGAAATAATAATGTAATCGGAGTGGGAAGAGGCAGTGAGACACAAAAAATATGTCTTTGCAGATAAATGAAACTATCAATTTTTTAGGACATTATTCAGTGTTGTtgtcagggtctcagcagagctgggaaagagaaagctcagctgtcaagagcgttaaagta</dnaseq>| | sequence = <dnaseq>AAACAGCTCCTGCGCGCCGCCGTGTCCACCCCTCCAGACGCTGACTCCCTTCTCCTGGCGCCGAGTCTGGCTCGAGGGGCCGCACATGGCGCCTCAAAGGGCCCAGTTGGGAGTCGGGATTCGCAAGGCAGTAAATCAACCTCAAAGGAAAGCTGTATACCTGCACAAGTGGTGGCTGCCATTGATGTCAACACTGTCGCTAATGAAGTATACAAGTATAATTTTCCTCACACACAGTTACTTGCCAAGACGATTGAAttacaTACTGTagagtaaatgatagctaccgaagacagagtgatccgtgataaatatcattaatgcctctgaagaggagaatgactccagtggaacaaaaactcttaataaaaatagataaaaatttttctagaatgaaATTTACaatataacatccatgagcccttctggaacagatgactgcatcacttaatctagctgagcaagagatgaatcaaagtagaaaacccaggaatgaagctgccgtgttaggaggaAAACTATGGTTAGAAAATAGCTGAAAATGTTGTAAAGCTTTGCAGTGTAGAAATAATAATGTAATCGGAGTGGGAAGAGGCAGTGAGACACAAAAAATATGTCTTTGCAGATAAATGAAACTATCAATTTTTTAGGACATTATTCAGTGTTGTtgtcagggtctcagcagagctgggaaagagaaagctcagctgtcaagagcgttaaagta</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG005320]] | + | [[Category:Sense]][[Category:NONHSAG005320]][[Category:Transcripts]] |
Latest revision as of 20:04, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011605 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
727 nt |
Genomic location |
chr10-:17213555..17243427 |
Exon number |
3 |
Exons |
17213555..17214023,17216550..17216659,17243280..17243427 |
Genome context |
|
Sequence |
000001 AAACAGCTCC TGCGCGCCGC CGTGTCCACC CCTCCAGACG CTGACTCCCT TCTCCTGGCG CCGAGTCTGG CTCGAGGGGC 000080
000081 CGCACATGGC GCCTCAAAGG GCCCAGTTGG GAGTCGGGAT TCGCAAGGCA GTAAATCAAC CTCAAAGGAA AGCTGTATAC 000160 000161 CTGCACAAGT GGTGGCTGCC ATTGATGTCA ACACTGTCGC TAATGAAGTA TACAAGTATA ATTTTCCTCA CACACAGTTA 000240 000241 CTTGCCAAGA CGATTGAAtt acaTACTGTa gagtaaatga tagctaccga agacagagtg atccgtgata aatatcatta 000320 000321 atgcctctga agaggagaat gactccagtg gaacaaaaac tcttaataaa aatagataaa aatttttcta gaatgaaATT 000400 000401 TACaatataa catccatgag cccttctgga acagatgact gcatcactta atctagctga gcaagagatg aatcaaagta 000480 000481 gaaaacccag gaatgaagct gccgtgttag gaggaAAACT ATGGTTAGAA AATAGCTGAA AATGTTGTAA AGCTTTGCAG 000560 000561 TGTAGAAATA ATAATGTAAT CGGAGTGGGA AGAGGCAGTG AGACACAAAA AATATGTCTT TGCAGATAAA TGAAACTATC 000640 000641 AATTTTTTAG GACATTATTC AGTGTTGTtg tcagggtctc agcagagctg ggaaagagaa agctcagctg tcaagagcgt 000720 000721 taaagta |
Predicted Small Protein
Name | NONHSAT011605_smProtein_434:538 |
Length | 35 |
Molecular weight | 3787.2422 |
Aromaticity | 0.0294117647059 |
Instability index | 44.9823529412 |
Isoelectric point | 6.05010986328 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0408685996921 |
Amino acid sequence | MTASLNLAEQEMNQSRKPRNEAAVLGGKLWLENS |
Secondary structure | LLLLHHHHHHHHHHLLLLHHHHHHHLLLEEEELL |
PRMN | - |
PiMo | - |