Difference between revisions of "NONHSAT016780"
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sequence = <dnaseq>CCTTTGATTTCTGTTAATTAACTACTTTGGACTCTGGGGGTCTGGAGTGGCTTGTGTTTGACACACAAAGAATCCGGGGCAAGGATGATACCCACAACAGGGTGTCTGCACTGGAAAGGGCTCCGTGTATTTACCTGTAGGGCAATTCAATTAAAACTCAAGAAAGGGGTAAATCTATGAGATTAGCTCCAGGAACAATGGTGCTGATTGTTGCTGGCCCTCACCATCCCTACGAAAGCAGATGTTAAACAAATATTTTGATGCCTCCAATCAGCCCCAGTGTGAATCTCCTGTttttgtttttcattatctccagagatgggaattctacagtcttcatcagtagcccactttggtgatctatttaaAATTGGTGATCTATTTAAAAGACTCCATAGAACTTGATTGTAAATATCCAAATGGAGGGACATGATTCATTAATATAGGGACATTCTGGAGTTGTCCATTCGGCCTTTGCTCCTCCCCATTCTCAGAAGCACCCTTCATTACCGGAGAGGTTTCTTGGACGTTTGTGGCAGGCTCAGGAGGAAGAGAAGAGGTAGAGGGGGAAAAGTGTATAGACTGGGGGCTGGGGGCAATATTGCTGGGAGGACCCTCAAAGGAAGCCACTGGAGTCTTCTAGATGTTTGGAAGAGAGGAGTAGTTGAGCAGCTGCAGTGTGACACAATGGAAAAGTAATTTAAGAAGTGTCCTGGGCCACATATTCCCTTCatgacacagcatttgtctcctccagaggatacagcaccaaggcgccatcttggaagtagactggagctcttagcagaccagaacctgtggGCCTCCTAAGACGATGTTGCTGGATGTCCCCTGCTGACCCCACAGACTGGCTCCTCTGGTGTCCGCTGACTTGGCCTGGTGAGAAGGGCAGGGCCAGGCCCTTCCCTGTCTCGACCTGCATTCCCACCCAACACAGCAA</dnaseq>| | sequence = <dnaseq>CCTTTGATTTCTGTTAATTAACTACTTTGGACTCTGGGGGTCTGGAGTGGCTTGTGTTTGACACACAAAGAATCCGGGGCAAGGATGATACCCACAACAGGGTGTCTGCACTGGAAAGGGCTCCGTGTATTTACCTGTAGGGCAATTCAATTAAAACTCAAGAAAGGGGTAAATCTATGAGATTAGCTCCAGGAACAATGGTGCTGATTGTTGCTGGCCCTCACCATCCCTACGAAAGCAGATGTTAAACAAATATTTTGATGCCTCCAATCAGCCCCAGTGTGAATCTCCTGTttttgtttttcattatctccagagatgggaattctacagtcttcatcagtagcccactttggtgatctatttaaAATTGGTGATCTATTTAAAAGACTCCATAGAACTTGATTGTAAATATCCAAATGGAGGGACATGATTCATTAATATAGGGACATTCTGGAGTTGTCCATTCGGCCTTTGCTCCTCCCCATTCTCAGAAGCACCCTTCATTACCGGAGAGGTTTCTTGGACGTTTGTGGCAGGCTCAGGAGGAAGAGAAGAGGTAGAGGGGGAAAAGTGTATAGACTGGGGGCTGGGGGCAATATTGCTGGGAGGACCCTCAAAGGAAGCCACTGGAGTCTTCTAGATGTTTGGAAGAGAGGAGTAGTTGAGCAGCTGCAGTGTGACACAATGGAAAAGTAATTTAAGAAGTGTCCTGGGCCACATATTCCCTTCatgacacagcatttgtctcctccagaggatacagcaccaaggcgccatcttggaagtagactggagctcttagcagaccagaacctgtggGCCTCCTAAGACGATGTTGCTGGATGTCCCCTGCTGACCCCACAGACTGGCTCCTCTGGTGTCCGCTGACTTGGCCTGGTGAGAAGGGCAGGGCCAGGCCCTTCCCTGTCTCGACCTGCATTCCCACCCAACACAGCAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG007089]] | + | [[Category:Intergenic]][[Category:NONHSAG007089]][[Category:Transcripts]] |
Latest revision as of 20:20, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT016780 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
961 nt |
Genomic location |
chr10+:125242747..125270639 |
Exon number |
3 |
Exons |
125242747..125243480,125248439..125248526,125270501..125270639 |
Genome context |
|
Sequence |
000001 CCTTTGATTT CTGTTAATTA ACTACTTTGG ACTCTGGGGG TCTGGAGTGG CTTGTGTTTG ACACACAAAG AATCCGGGGC 000080
000081 AAGGATGATA CCCACAACAG GGTGTCTGCA CTGGAAAGGG CTCCGTGTAT TTACCTGTAG GGCAATTCAA TTAAAACTCA 000160 000161 AGAAAGGGGT AAATCTATGA GATTAGCTCC AGGAACAATG GTGCTGATTG TTGCTGGCCC TCACCATCCC TACGAAAGCA 000240 000241 GATGTTAAAC AAATATTTTG ATGCCTCCAA TCAGCCCCAG TGTGAATCTC CTGTttttgt ttttcattat ctccagagat 000320 000321 gggaattcta cagtcttcat cagtagccca ctttggtgat ctatttaaAA TTGGTGATCT ATTTAAAAGA CTCCATAGAA 000400 000401 CTTGATTGTA AATATCCAAA TGGAGGGACA TGATTCATTA ATATAGGGAC ATTCTGGAGT TGTCCATTCG GCCTTTGCTC 000480 000481 CTCCCCATTC TCAGAAGCAC CCTTCATTAC CGGAGAGGTT TCTTGGACGT TTGTGGCAGG CTCAGGAGGA AGAGAAGAGG 000560 000561 TAGAGGGGGA AAAGTGTATA GACTGGGGGC TGGGGGCAAT ATTGCTGGGA GGACCCTCAA AGGAAGCCAC TGGAGTCTTC 000640 000641 TAGATGTTTG GAAGAGAGGA GTAGTTGAGC AGCTGCAGTG TGACACAATG GAAAAGTAAT TTAAGAAGTG TCCTGGGCCA 000720 000721 CATATTCCCT TCatgacaca gcatttgtct cctccagagg atacagcacc aaggcgccat cttggaagta gactggagct 000800 000801 cttagcagac cagaacctgt ggGCCTCCTA AGACGATGTT GCTGGATGTC CCCTGCTGAC CCCACAGACT GGCTCCTCTG 000880 000881 GTGTCCGCTG ACTTGGCCTG GTGAGAAGGG CAGGGCCAGG CCCTTCCCTG TCTCGACCTG CATTCCCACC CAACACAGCA 000960 000961 A |
Predicted Small Protein
Name | NONHSAT016780_smProtein_260:358 |
Length | 33 |
Molecular weight | 3596.1973 |
Aromaticity | 0.15625 |
Instability index | 79.703125 |
Isoelectric point | 5.58770751953 |
Runs | 6 |
Runs residual | 0.00414540816327 |
Runs probability | 0.091827121239 |
Amino acid sequence | MPPISPSVNLLFLFFIISRDGNSTVFISSPLW |
Secondary structure | LLLLLLLLLHHHHEEEEELLLLLEEEEELLLL |
PRMN | LLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | oooooTTTTTTTTTTTTTTTTTTiiiiiiiii |