Difference between revisions of "NONHSAT016780"

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sequence = <dnaseq>CCTTTGATTTCTGTTAATTAACTACTTTGGACTCTGGGGGTCTGGAGTGGCTTGTGTTTGACACACAAAGAATCCGGGGCAAGGATGATACCCACAACAGGGTGTCTGCACTGGAAAGGGCTCCGTGTATTTACCTGTAGGGCAATTCAATTAAAACTCAAGAAAGGGGTAAATCTATGAGATTAGCTCCAGGAACAATGGTGCTGATTGTTGCTGGCCCTCACCATCCCTACGAAAGCAGATGTTAAACAAATATTTTGATGCCTCCAATCAGCCCCAGTGTGAATCTCCTGTttttgtttttcattatctccagagatgggaattctacagtcttcatcagtagcccactttggtgatctatttaaAATTGGTGATCTATTTAAAAGACTCCATAGAACTTGATTGTAAATATCCAAATGGAGGGACATGATTCATTAATATAGGGACATTCTGGAGTTGTCCATTCGGCCTTTGCTCCTCCCCATTCTCAGAAGCACCCTTCATTACCGGAGAGGTTTCTTGGACGTTTGTGGCAGGCTCAGGAGGAAGAGAAGAGGTAGAGGGGGAAAAGTGTATAGACTGGGGGCTGGGGGCAATATTGCTGGGAGGACCCTCAAAGGAAGCCACTGGAGTCTTCTAGATGTTTGGAAGAGAGGAGTAGTTGAGCAGCTGCAGTGTGACACAATGGAAAAGTAATTTAAGAAGTGTCCTGGGCCACATATTCCCTTCatgacacagcatttgtctcctccagaggatacagcaccaaggcgccatcttggaagtagactggagctcttagcagaccagaacctgtggGCCTCCTAAGACGATGTTGCTGGATGTCCCCTGCTGACCCCACAGACTGGCTCCTCTGGTGTCCGCTGACTTGGCCTGGTGAGAAGGGCAGGGCCAGGCCCTTCCCTGTCTCGACCTGCATTCCCACCCAACACAGCAA</dnaseq>|
 
sequence = <dnaseq>CCTTTGATTTCTGTTAATTAACTACTTTGGACTCTGGGGGTCTGGAGTGGCTTGTGTTTGACACACAAAGAATCCGGGGCAAGGATGATACCCACAACAGGGTGTCTGCACTGGAAAGGGCTCCGTGTATTTACCTGTAGGGCAATTCAATTAAAACTCAAGAAAGGGGTAAATCTATGAGATTAGCTCCAGGAACAATGGTGCTGATTGTTGCTGGCCCTCACCATCCCTACGAAAGCAGATGTTAAACAAATATTTTGATGCCTCCAATCAGCCCCAGTGTGAATCTCCTGTttttgtttttcattatctccagagatgggaattctacagtcttcatcagtagcccactttggtgatctatttaaAATTGGTGATCTATTTAAAAGACTCCATAGAACTTGATTGTAAATATCCAAATGGAGGGACATGATTCATTAATATAGGGACATTCTGGAGTTGTCCATTCGGCCTTTGCTCCTCCCCATTCTCAGAAGCACCCTTCATTACCGGAGAGGTTTCTTGGACGTTTGTGGCAGGCTCAGGAGGAAGAGAAGAGGTAGAGGGGGAAAAGTGTATAGACTGGGGGCTGGGGGCAATATTGCTGGGAGGACCCTCAAAGGAAGCCACTGGAGTCTTCTAGATGTTTGGAAGAGAGGAGTAGTTGAGCAGCTGCAGTGTGACACAATGGAAAAGTAATTTAAGAAGTGTCCTGGGCCACATATTCCCTTCatgacacagcatttgtctcctccagaggatacagcaccaaggcgccatcttggaagtagactggagctcttagcagaccagaacctgtggGCCTCCTAAGACGATGTTGCTGGATGTCCCCTGCTGACCCCACAGACTGGCTCCTCTGGTGTCCGCTGACTTGGCCTGGTGAGAAGGGCAGGGCCAGGCCCTTCCCTGTCTCGACCTGCATTCCCACCCAACACAGCAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG007089]]
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[[Category:Intergenic]][[Category:NONHSAG007089]][[Category:Transcripts]]

Latest revision as of 20:20, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT016780

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

961 nt

Genomic location

chr10+:125242747..125270639

Exon number

3

Exons

125242747..125243480,125248439..125248526,125270501..125270639

Genome context

Sequence
000001 CCTTTGATTT CTGTTAATTA ACTACTTTGG ACTCTGGGGG TCTGGAGTGG CTTGTGTTTG ACACACAAAG AATCCGGGGC 000080
000081 AAGGATGATA CCCACAACAG GGTGTCTGCA CTGGAAAGGG CTCCGTGTAT TTACCTGTAG GGCAATTCAA TTAAAACTCA 000160
000161 AGAAAGGGGT AAATCTATGA GATTAGCTCC AGGAACAATG GTGCTGATTG TTGCTGGCCC TCACCATCCC TACGAAAGCA 000240
000241 GATGTTAAAC AAATATTTTG ATGCCTCCAA TCAGCCCCAG TGTGAATCTC CTGTttttgt ttttcattat ctccagagat 000320
000321 gggaattcta cagtcttcat cagtagccca ctttggtgat ctatttaaAA TTGGTGATCT ATTTAAAAGA CTCCATAGAA 000400
000401 CTTGATTGTA AATATCCAAA TGGAGGGACA TGATTCATTA ATATAGGGAC ATTCTGGAGT TGTCCATTCG GCCTTTGCTC 000480
000481 CTCCCCATTC TCAGAAGCAC CCTTCATTAC CGGAGAGGTT TCTTGGACGT TTGTGGCAGG CTCAGGAGGA AGAGAAGAGG 000560
000561 TAGAGGGGGA AAAGTGTATA GACTGGGGGC TGGGGGCAAT ATTGCTGGGA GGACCCTCAA AGGAAGCCAC TGGAGTCTTC 000640
000641 TAGATGTTTG GAAGAGAGGA GTAGTTGAGC AGCTGCAGTG TGACACAATG GAAAAGTAAT TTAAGAAGTG TCCTGGGCCA 000720
000721 CATATTCCCT TCatgacaca gcatttgtct cctccagagg atacagcacc aaggcgccat cttggaagta gactggagct 000800
000801 cttagcagac cagaacctgt ggGCCTCCTA AGACGATGTT GCTGGATGTC CCCTGCTGAC CCCACAGACT GGCTCCTCTG 000880
000881 GTGTCCGCTG ACTTGGCCTG GTGAGAAGGG CAGGGCCAGG CCCTTCCCTG TCTCGACCTG CATTCCCACC CAACACAGCA 000960
000961 A
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Predicted Small Protein

Name NONHSAT016780_smProtein_260:358
Length 33
Molecular weight 3596.1973
Aromaticity 0.15625
Instability index 79.703125
Isoelectric point 5.58770751953
Runs 6
Runs residual 0.00414540816327
Runs probability 0.091827121239
Amino acid sequence MPPISPSVNLLFLFFIISRDGNSTVFISSPLW
Secondary structure LLLLLLLLLHHHHEEEEELLLLLEEEEELLLL
PRMN LLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL
PiMo oooooTTTTTTTTTTTTTTTTTTiiiiiiiii