Difference between revisions of "NONHSAT025928"

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sequence = <dnaseq>TGGCTAGTGTTTCTGACACATTAGTCCTGACTAATGACAACAGGAAGATAATTAACTCTGATTTTGATATATTACATTTGAAAAGACTTCTCTAGATGGCAAGGAGCTCAAGAGAAAAATCATGGCTAGAAATATAGATGTAAAAGCCACCTTTAGATAAGTGGTTGTTAAAGCTATAGAAGTGGCTTCTATAAAGCTATAGAAGTTCACCCAGGATAAGTGTGGAAAGTGTTGAGAGGCCAAGGATGGAACCTTGAAGAATGCTAATATCCAAGAATATGCAGAAGAGGAGGAAGCAGCTGTTTCTAACTCGTACCATTTCTGATGTTAGCCAGCCCTTCCAATCTTACAGCCCTCAGTGGGAAAAAGGTAGTCTATTAGAATTCATTATCGTGTCCCTAGCTTTGGGACAATCCTGCCTCGAGCACTAGCTGGCTGTGACCTCTCTGTACTTCAGTTTCCTTATCAGTAAAAGTACCTGTCTCTCAGAGCTGTTGTGATGGTGAAGTGAGTTAACCTATGTAGAGGGCACAGGACGCAGCCTGGGCTATAATAAGTACTGTATATCTAACTGTATAGTCTGGCACTGAGTAGGCTTAATAAATGTCTGCGAAGGAATAGCAGCATTCCATCATTCACCTGTAATAATCTCTTTGTGGTATCATCACTACTAGATCAAAAAGGTAGGGATAAATTTCTGGAGGAAAAAACGTTGTAGATAGTTGGAATGATTGACCAAGGAGGGAGTGAAATATTTTGGGGGAGGTTCTTATGAACATATTGACTCTCCTCAGTCAGGATTCCCATGTATAGTCCTGCATATTAGAATACAGGAAGGATACCCGTATAATATTTAGGATATACTTATATTAAGAAATTATTTGTGATTTTTCTGAAATTCAAACTTAACTGGGTATATTCTAGCCACTCTATCTCCATTTTACAGATGAGGACAATCAGAGTTCAAGCAAGGGACAGAAATCACCGCAGAAATTTGGACAGGGAAAATTTAATATAAAGAATTGTTGACTATGTAAAGTTCTGTTAACTACTGAAAGGGGAAAAAGAACTCTAAGAAGCAGCAAGGCAGTTAACTGCAGAAAGTGGCTTCTACACCTAAGACTAAGGGAAAAATGAACAAGGAAGGAACTTACAAACTATTGGAAAAGGTCCCTGCAAGGCTGGATTCAGACCTCTGAGGAGAGTTCCTGGTTGTTACAGGAACATGCTGCCTGTAGTCCTGGTGCCAAGGAAACTTGCTGAAGGGTACCCGCTGTTAAACTGCATAGGGCAGCCTGCCACTGCTGTAAACCCTGACCGGGATAACCGCGTGCCGATCTGCCTGCCACTATATGGGAAAACAGAAAACTAGATGAAGAAGAAAAAGGCCTCTGTCTTCCAGCCATGCATTGTTCCTTCCACACTCCTTATTGTCAAAGCCTAACATGGAGCCAGCTGGCAAAGGAAAAGTGTGGCCTGTAGAGTTCAGCCCCAGTATTACAAAGCAGGATGAAGAAACTGGGATTGGAGCTGAAAGACAATAAATTAATAACTGATACAGATGGAAAGTACATTTTTCAACCCAAGGATAGAAAGAAGCCCCAAACATCATCACACAAAAGGAAGACAGATTGGCTGAGAGAGGCATTTACATTAAAAAAATAAAATACTGAAGGTTTACAGGGACACATCTCTTGGAGTAGAGCAGCCTACCTCCAAGGTATTGGATAAGCAAGACAAGGTGTTATAAAGCCTATTGTGTAAATATATACAGAAGACTGAGAGGTTTTCAACCGAATAAATGAATGCCTGGTACAGCGTTAATATAGCTGAGAAATTCATCCTGTAACAAGTTGA</dnaseq>|
 
sequence = <dnaseq>TGGCTAGTGTTTCTGACACATTAGTCCTGACTAATGACAACAGGAAGATAATTAACTCTGATTTTGATATATTACATTTGAAAAGACTTCTCTAGATGGCAAGGAGCTCAAGAGAAAAATCATGGCTAGAAATATAGATGTAAAAGCCACCTTTAGATAAGTGGTTGTTAAAGCTATAGAAGTGGCTTCTATAAAGCTATAGAAGTTCACCCAGGATAAGTGTGGAAAGTGTTGAGAGGCCAAGGATGGAACCTTGAAGAATGCTAATATCCAAGAATATGCAGAAGAGGAGGAAGCAGCTGTTTCTAACTCGTACCATTTCTGATGTTAGCCAGCCCTTCCAATCTTACAGCCCTCAGTGGGAAAAAGGTAGTCTATTAGAATTCATTATCGTGTCCCTAGCTTTGGGACAATCCTGCCTCGAGCACTAGCTGGCTGTGACCTCTCTGTACTTCAGTTTCCTTATCAGTAAAAGTACCTGTCTCTCAGAGCTGTTGTGATGGTGAAGTGAGTTAACCTATGTAGAGGGCACAGGACGCAGCCTGGGCTATAATAAGTACTGTATATCTAACTGTATAGTCTGGCACTGAGTAGGCTTAATAAATGTCTGCGAAGGAATAGCAGCATTCCATCATTCACCTGTAATAATCTCTTTGTGGTATCATCACTACTAGATCAAAAAGGTAGGGATAAATTTCTGGAGGAAAAAACGTTGTAGATAGTTGGAATGATTGACCAAGGAGGGAGTGAAATATTTTGGGGGAGGTTCTTATGAACATATTGACTCTCCTCAGTCAGGATTCCCATGTATAGTCCTGCATATTAGAATACAGGAAGGATACCCGTATAATATTTAGGATATACTTATATTAAGAAATTATTTGTGATTTTTCTGAAATTCAAACTTAACTGGGTATATTCTAGCCACTCTATCTCCATTTTACAGATGAGGACAATCAGAGTTCAAGCAAGGGACAGAAATCACCGCAGAAATTTGGACAGGGAAAATTTAATATAAAGAATTGTTGACTATGTAAAGTTCTGTTAACTACTGAAAGGGGAAAAAGAACTCTAAGAAGCAGCAAGGCAGTTAACTGCAGAAAGTGGCTTCTACACCTAAGACTAAGGGAAAAATGAACAAGGAAGGAACTTACAAACTATTGGAAAAGGTCCCTGCAAGGCTGGATTCAGACCTCTGAGGAGAGTTCCTGGTTGTTACAGGAACATGCTGCCTGTAGTCCTGGTGCCAAGGAAACTTGCTGAAGGGTACCCGCTGTTAAACTGCATAGGGCAGCCTGCCACTGCTGTAAACCCTGACCGGGATAACCGCGTGCCGATCTGCCTGCCACTATATGGGAAAACAGAAAACTAGATGAAGAAGAAAAAGGCCTCTGTCTTCCAGCCATGCATTGTTCCTTCCACACTCCTTATTGTCAAAGCCTAACATGGAGCCAGCTGGCAAAGGAAAAGTGTGGCCTGTAGAGTTCAGCCCCAGTATTACAAAGCAGGATGAAGAAACTGGGATTGGAGCTGAAAGACAATAAATTAATAACTGATACAGATGGAAAGTACATTTTTCAACCCAAGGATAGAAAGAAGCCCCAAACATCATCACACAAAAGGAAGACAGATTGGCTGAGAGAGGCATTTACATTAAAAAAATAAAATACTGAAGGTTTACAGGGACACATCTCTTGGAGTAGAGCAGCCTACCTCCAAGGTATTGGATAAGCAAGACAAGGTGTTATAAAGCCTATTGTGTAAATATATACAGAAGACTGAGAGGTTTTCAACCGAATAAATGAATGCCTGGTACAGCGTTAATATAGCTGAGAAATTCATCCTGTAACAAGTTGA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG010226]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG010226]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:51, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT025928

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1857 nt

Genomic location

chr12-:3900217..3910010

Exon number

4

Exons

3900217..3901118,3901331..3901460,3903417..3903831,3909601..3910010

Genome context

Sequence
000001 TGGCTAGTGT TTCTGACACA TTAGTCCTGA CTAATGACAA CAGGAAGATA ATTAACTCTG ATTTTGATAT ATTACATTTG 000080
000081 AAAAGACTTC TCTAGATGGC AAGGAGCTCA AGAGAAAAAT CATGGCTAGA AATATAGATG TAAAAGCCAC CTTTAGATAA 000160
000161 GTGGTTGTTA AAGCTATAGA AGTGGCTTCT ATAAAGCTAT AGAAGTTCAC CCAGGATAAG TGTGGAAAGT GTTGAGAGGC 000240
000241 CAAGGATGGA ACCTTGAAGA ATGCTAATAT CCAAGAATAT GCAGAAGAGG AGGAAGCAGC TGTTTCTAAC TCGTACCATT 000320
000321 TCTGATGTTA GCCAGCCCTT CCAATCTTAC AGCCCTCAGT GGGAAAAAGG TAGTCTATTA GAATTCATTA TCGTGTCCCT 000400
000401 AGCTTTGGGA CAATCCTGCC TCGAGCACTA GCTGGCTGTG ACCTCTCTGT ACTTCAGTTT CCTTATCAGT AAAAGTACCT 000480
000481 GTCTCTCAGA GCTGTTGTGA TGGTGAAGTG AGTTAACCTA TGTAGAGGGC ACAGGACGCA GCCTGGGCTA TAATAAGTAC 000560
000561 TGTATATCTA ACTGTATAGT CTGGCACTGA GTAGGCTTAA TAAATGTCTG CGAAGGAATA GCAGCATTCC ATCATTCACC 000640
000641 TGTAATAATC TCTTTGTGGT ATCATCACTA CTAGATCAAA AAGGTAGGGA TAAATTTCTG GAGGAAAAAA CGTTGTAGAT 000720
000721 AGTTGGAATG ATTGACCAAG GAGGGAGTGA AATATTTTGG GGGAGGTTCT TATGAACATA TTGACTCTCC TCAGTCAGGA 000800
000801 TTCCCATGTA TAGTCCTGCA TATTAGAATA CAGGAAGGAT ACCCGTATAA TATTTAGGAT ATACTTATAT TAAGAAATTA 000880
000881 TTTGTGATTT TTCTGAAATT CAAACTTAAC TGGGTATATT CTAGCCACTC TATCTCCATT TTACAGATGA GGACAATCAG 000960
000961 AGTTCAAGCA AGGGACAGAA ATCACCGCAG AAATTTGGAC AGGGAAAATT TAATATAAAG AATTGTTGAC TATGTAAAGT 001040
001041 TCTGTTAACT ACTGAAAGGG GAAAAAGAAC TCTAAGAAGC AGCAAGGCAG TTAACTGCAG AAAGTGGCTT CTACACCTAA 001120
001121 GACTAAGGGA AAAATGAACA AGGAAGGAAC TTACAAACTA TTGGAAAAGG TCCCTGCAAG GCTGGATTCA GACCTCTGAG 001200
001201 GAGAGTTCCT GGTTGTTACA GGAACATGCT GCCTGTAGTC CTGGTGCCAA GGAAACTTGC TGAAGGGTAC CCGCTGTTAA 001280
001281 ACTGCATAGG GCAGCCTGCC ACTGCTGTAA ACCCTGACCG GGATAACCGC GTGCCGATCT GCCTGCCACT ATATGGGAAA 001360
001361 ACAGAAAACT AGATGAAGAA GAAAAAGGCC TCTGTCTTCC AGCCATGCAT TGTTCCTTCC ACACTCCTTA TTGTCAAAGC 001440
001441 CTAACATGGA GCCAGCTGGC AAAGGAAAAG TGTGGCCTGT AGAGTTCAGC CCCAGTATTA CAAAGCAGGA TGAAGAAACT 001520
001521 GGGATTGGAG CTGAAAGACA ATAAATTAAT AACTGATACA GATGGAAAGT ACATTTTTCA ACCCAAGGAT AGAAAGAAGC 001600
001601 CCCAAACATC ATCACACAAA AGGAAGACAG ATTGGCTGAG AGAGGCATTT ACATTAAAAA AATAAAATAC TGAAGGTTTA 001680
001681 CAGGGACACA TCTCTTGGAG TAGAGCAGCC TACCTCCAAG GTATTGGATA AGCAAGACAA GGTGTTATAA AGCCTATTGT 001760
001761 GTAAATATAT ACAGAAGACT GAGAGGTTTT CAACCGAATA AATGAATGCC TGGTACAGCG TTAATATAGC TGAGAAATTC 001840
001841 ATCCTGTAAC AAGTTGA
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Predicted Small Protein

Name NONHSAT025928_smProtein_260:430
Length 57
Molecular weight 6512.5378
Aromaticity 0.0892857142857
Instability index 70.925
Isoelectric point 9.51287841797
Runs 8
Runs residual 0.0104410616706
Runs probability 0.0323374845434
Amino acid sequence MLISKNMQKRRKQLFLTRTISDVSQPFQSYSPQWEKGSLLEFIIVSLALGQSCLEH
Secondary structure LLLLHHHHHHHHHHHEEEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHLLHHHLL
PRMN -
PiMo -