Difference between revisions of "NONHSAT026115"
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sequence = <dnaseq>GAACATGGTGGAGGTCAGGTCAGATGACAGAAGACAATACATCACAGTTACTTGGTCACTGAGAAGTGATGGGGGGCTGGTCCACTAGGGTAGAGGGAGCTCAGTCTGGGCCACCACAGCTCACCACCTCTTTTTCTCCCTATGCAGTTCTGAAACAGCTGGAAGAACTGCTGAGTGACATGAAAGCTGATGTGACTCGACTCCCAGCTACCATTGCCCGAATTCCCCCAGTTGCTGTGAGGTTACAGATGTCAGAGCGTAACATTCTCAGCCGCCTGGCAAACCGGGCACCCGAACCTACCCCACAGCAGGTAGCCCAGCAGCAGTGAAGATGCAGACTGATACCACCTCCACCGCTGAGCAGTGACCTTCCTCACTTTCTCTTGTCCCAGCTTCTCCCCTGGGGGCCTGAGAGACCCTCACCTTCCTTCTGCCCATCTTCCATGTTGTAAAGGAACAGCCCCAGTGCACTGGGGGAGGGGAGGGAGTGAGGGGCAGTGGTGCCCTTCCTGCAGAAGAGACATGCAGCAGTAGCGCTGGCGCCATCTGCAGGAGCTGGCGGGCTGGCCTTCTGGACCCTGGCTTCTCCCCACTGTAACGCCTGTTACACACAAACTGTTGTGGGTTCCTGCCAGGCTTGAAGAAAATGATCTGAATTTT</dnaseq>| | sequence = <dnaseq>GAACATGGTGGAGGTCAGGTCAGATGACAGAAGACAATACATCACAGTTACTTGGTCACTGAGAAGTGATGGGGGGCTGGTCCACTAGGGTAGAGGGAGCTCAGTCTGGGCCACCACAGCTCACCACCTCTTTTTCTCCCTATGCAGTTCTGAAACAGCTGGAAGAACTGCTGAGTGACATGAAAGCTGATGTGACTCGACTCCCAGCTACCATTGCCCGAATTCCCCCAGTTGCTGTGAGGTTACAGATGTCAGAGCGTAACATTCTCAGCCGCCTGGCAAACCGGGCACCCGAACCTACCCCACAGCAGGTAGCCCAGCAGCAGTGAAGATGCAGACTGATACCACCTCCACCGCTGAGCAGTGACCTTCCTCACTTTCTCTTGTCCCAGCTTCTCCCCTGGGGGCCTGAGAGACCCTCACCTTCCTTCTGCCCATCTTCCATGTTGTAAAGGAACAGCCCCAGTGCACTGGGGGAGGGGAGGGAGTGAGGGGCAGTGGTGCCCTTCCTGCAGAAGAGACATGCAGCAGTAGCGCTGGCGCCATCTGCAGGAGCTGGCGGGCTGGCCTTCTGGACCCTGGCTTCTCCCCACTGTAACGCCTGTTACACACAAACTGTTGTGGGTTCCTGCCAGGCTTGAAGAAAATGATCTGAATTTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG010318]] | + | [[Category:Sense]][[Category:NONHSAG010318]][[Category:Transcripts]] |
Latest revision as of 20:52, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT026115 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
660 nt |
| Genomic location |
chr12-:6679511..6680345 |
| Exon number |
2 |
| Exons |
6679511..6679859,6680035..6680345 |
| Genome context |
|
| Sequence |
000001 GAACATGGTG GAGGTCAGGT CAGATGACAG AAGACAATAC ATCACAGTTA CTTGGTCACT GAGAAGTGAT GGGGGGCTGG 000080
000081 TCCACTAGGG TAGAGGGAGC TCAGTCTGGG CCACCACAGC TCACCACCTC TTTTTCTCCC TATGCAGTTC TGAAACAGCT 000160 000161 GGAAGAACTG CTGAGTGACA TGAAAGCTGA TGTGACTCGA CTCCCAGCTA CCATTGCCCG AATTCCCCCA GTTGCTGTGA 000240 000241 GGTTACAGAT GTCAGAGCGT AACATTCTCA GCCGCCTGGC AAACCGGGCA CCCGAACCTA CCCCACAGCA GGTAGCCCAG 000320 000321 CAGCAGTGAA GATGCAGACT GATACCACCT CCACCGCTGA GCAGTGACCT TCCTCACTTT CTCTTGTCCC AGCTTCTCCC 000400 000401 CTGGGGGCCT GAGAGACCCT CACCTTCCTT CTGCCCATCT TCCATGTTGT AAAGGAACAG CCCCAGTGCA CTGGGGGAGG 000480 000481 GGAGGGAGTG AGGGGCAGTG GTGCCCTTCC TGCAGAAGAG ACATGCAGCA GTAGCGCTGG CGCCATCTGC AGGAGCTGGC 000560 000561 GGGCTGGCCT TCTGGACCCT GGCTTCTCCC CACTGTAACG CCTGTTACAC ACAAACTGTT GTGGGTTCCT GCCAGGCTTG 000640 000641 AAGAAAATGA TCTGAATTTT |
Predicted Small Protein
| Name | NONHSAT026115_smProtein_68:328 |
| Length | 87 |
| Molecular weight | 9425.7023 |
| Aromaticity | 0.0348837209302 |
| Instability index | 78.1627906977 |
| Isoelectric point | 9.67852783203 |
| Runs | 13 |
| Runs residual | 0.0115411315515 |
| Runs probability | 0.031599472776 |
| Amino acid sequence | MGGWSTRVEGAQSGPPQLTTSFSPYAVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQ MSERNILSRLANRAPEPTPQQVAQQQ |
| Secondary structure | LLLLEEEELLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHLLLLEEEEEE LLHHHHHHHHHHLLLLLLHHHHHLLL |
| PRMN | - |
| PiMo | - |
