Difference between revisions of "NONHSAT034163"

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sequence = <dnaseq>gacaaataagggaatatatgctggccacctcagccagggatggcaacccgctggggtctccttccgctgtgtggaagggttgtttttctgctcttcgcaataaatcttgctgctgctcattctttgggtcgccgccgccttttatgagttgtagcactcaccgcgaaggtctgcagcttcactcctgaagccagctagagccagcgagaccacgaacccactgggagggatgaacaactccggactcgccacctttatgaactgttaacactcacagcgaaggtctgcagcttcactcctgaagccagcgagaccacaaacccactaggaggaatgcacaactcctgatgccctgcctttaaaagctgtaacggtcactgcgaaggtctgcggcttcattcctgaagtcagcgaaaccacgaacccacctgaaggaagaaactccggacacatccgaacatcagaaggaacaaactctggacacaccatctttaactgtaacactcaccacgagggtccgcagcttcattcttaaagtcagcgagaccaagaacccaccaattccggacacGCAAGTATTCGTAACgttcttctgttccaagaaaaatggtcttcttacttccttgatggctcacaacatgctcctttctactgcaggaacactgtataacttctgtcaagcatgaactccccacctctgtttgacatacttctctactttcagaactcagctgaactatcgcttctcaagggagcactcaaacttcctgaacagagtaagagatttg</dnaseq>|
 
sequence = <dnaseq>gacaaataagggaatatatgctggccacctcagccagggatggcaacccgctggggtctccttccgctgtgtggaagggttgtttttctgctcttcgcaataaatcttgctgctgctcattctttgggtcgccgccgccttttatgagttgtagcactcaccgcgaaggtctgcagcttcactcctgaagccagctagagccagcgagaccacgaacccactgggagggatgaacaactccggactcgccacctttatgaactgttaacactcacagcgaaggtctgcagcttcactcctgaagccagcgagaccacaaacccactaggaggaatgcacaactcctgatgccctgcctttaaaagctgtaacggtcactgcgaaggtctgcggcttcattcctgaagtcagcgaaaccacgaacccacctgaaggaagaaactccggacacatccgaacatcagaaggaacaaactctggacacaccatctttaactgtaacactcaccacgagggtccgcagcttcattcttaaagtcagcgagaccaagaacccaccaattccggacacGCAAGTATTCGTAACgttcttctgttccaagaaaaatggtcttcttacttccttgatggctcacaacatgctcctttctactgcaggaacactgtataacttctgtcaagcatgaactccccacctctgtttgacatacttctctactttcagaactcagctgaactatcgcttctcaagggagcactcaaacttcctgaacagagtaagagatttg</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG013680]]
+
[[Category:Intergenic]][[Category:NONHSAG013680]][[Category:Transcripts]]

Latest revision as of 21:25, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT034163

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

788 nt

Genomic location

chr13+:64167530..64184581

Exon number

2

Exons

64167530..64168115,64184380..64184581

Genome context

Sequence
000001 gacaaataag ggaatatatg ctggccacct cagccaggga tggcaacccg ctggggtctc cttccgctgt gtggaagggt 000080
000081 tgtttttctg ctcttcgcaa taaatcttgc tgctgctcat tctttgggtc gccgccgcct tttatgagtt gtagcactca 000160
000161 ccgcgaaggt ctgcagcttc actcctgaag ccagctagag ccagcgagac cacgaaccca ctgggaggga tgaacaactc 000240
000241 cggactcgcc acctttatga actgttaaca ctcacagcga aggtctgcag cttcactcct gaagccagcg agaccacaaa 000320
000321 cccactagga ggaatgcaca actcctgatg ccctgccttt aaaagctgta acggtcactg cgaaggtctg cggcttcatt 000400
000401 cctgaagtca gcgaaaccac gaacccacct gaaggaagaa actccggaca catccgaaca tcagaaggaa caaactctgg 000480
000481 acacaccatc tttaactgta acactcacca cgagggtccg cagcttcatt cttaaagtca gcgagaccaa gaacccacca 000560
000561 attccggaca cGCAAGTATT CGTAACgttc ttctgttcca agaaaaatgg tcttcttact tccttgatgg ctcacaacat 000640
000641 gctcctttct actgcaggaa cactgtataa cttctgtcaa gcatgaactc cccacctctg tttgacatac ttctctactt 000720
000721 tcagaactca gctgaactat cgcttctcaa gggagcactc aaacttcctg aacagagtaa gagatttg
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Predicted Small Protein

Name NONHSAT034163_smProtein_17:187
Length 57
Molecular weight 5963.7869
Aromaticity 0.0892857142857
Instability index 70.9071428571
Isoelectric point 8.78802490234
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0140686905393
Amino acid sequence MLATSARDGNPLGSPSAVWKGCFSALRNKSCCCSFFGSPPPFMSCSTHREGLQLHS
Secondary structure LLLLLLLLLLLLLLHHHHHHHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLLEELL
PRMN -
PiMo -