Difference between revisions of "NONHSAT041650"

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sequence = <dnaseq>CAAAAGCTGATTGGAAGTCTATTCTTCCACCCTTGCCAGCCTGCCAGGATGGTGTCAGAAAGGCCATGTAGAAAGCAGAGTTTCATCCCCACTGAGTGGTGAGAAGATTTTCTCAATGGATATCATATGAAGAGTCAGAACTTCACCATGTCACCCCTCAATTTGGCAGTAAAGAAGTACCTGTCCCCTCTCAGCAGGGTAGTGTCAGAAGAAGCCTATTGGAGAGTCAGGACTTTCACCACCACTCAATTGCCACAGGCCACCCCCATGGTGTCAATAGAGGATGAGTGGGGAGCTGGAAACCCCGCTTCCACCCGGCAATAATGAGGTTCCCTCCCCTCCCCGACTTGAGTGTCAACAGATGCTGAGGGGGAACTGAAAGAAAAAAATAGATTAACCCACAATTATAGTTAGAAACTTCTCTACTCTTTTCTCAACAACTGATAGAGCAACTAGACAGAAAATCAGCAAAGATATAAAAGAACTCAATGAAAGCATCAATCAAAAGGATTTAATTGACTTTAATAGAACATGCTACCTAATAACAGCAAGATGTACATTATTTTTATACATATCCAAGATAGACTATATGCTGGGCCATAAAACCTCAACAAATTTAAAATAATCGAAGTCATGCAAAGTGTATTCTGCTTCCACCCACCAAGTCTTACATTAGCCCATTTGCACACTGCTATAAAGAATTACCTGAGACTGGGTAATTTATAAAGAAAACAGGTTTAATTGATTTACAGTTCCACATGGCTTGGAAGGCCTCAGGAAACTTACAATCATGGCAGAAGGCAAAGGGAAAGCAAGGCACGTTTTACATGGCAGCAGGAGACAATGAAAGGGAAGAGCCATGCAATTATCAAAAAACCAGATCTTGTGAGAATTCTGTCATGAGAACAGCAAGGCAGAAGTCCGTCCCCATGATTCAATCACCTCCCACAAGGCCACTCTGCCAACACATGGGGATTACAATTTGAGATGGGATGTGGGTGGGGACACAGAACCAAACTATGTCAAGTCTTTTCCATAGGCCTTCACCAAGTGTCCCCAGAAATACTGGAAGCAAGGCAGGAGAGCTGCAAATGGTCCCTCATATACACATACACACAGAGCCAGGCACAGGCATTGAATGCCTGGTAGTCTGAGGATGGAGAGGAGAAGGGAAGAAACTCTTCTGGCACTCTGTCTTACAGTGAGTGCAACCAGTGGGCTCCTACTGTTGGAAGTAGGTAAAAGAGCTCAAGGAGTTTCCCCATATTAAGTATAGGTGTGTGGGACCTGCTGAGTGAAGAATGAAGGCAATGCAAGAGAACTGAGAAAATGACTCCAGACACACAACTCCAAAGCCCTCGGAAAGGGAATGCATTAAACCTACCCTTAATCATTTGAAGACTCTGCTGAATTAAATCTTGCTAGAGTAACAATATGGCCCAAACCTGGCTCAATTCAAAATAGTTTGACTCAGTGCCCACACTAGCAGTGTGACAGAAGAAGGGAAAAACACTCCTCTTGGCACAAATATTATTTATGTAGGTCTCTACATTTATCTTACACAGAATATACAGCATTCCGTCAAAACTATACGACATGCAAAGAAACAAGACCCATCATTTAAAAAAAGAAAGAGTCAAAAGAACCAGATTCACATATGATCCAAATGTCAGAATAATCAGAAAATTTTTTAAAAAGAATAGTCACAATAAGACATTAAAGGATCTAGCAGTGAAAGATACAGATGAGCAAATGGAAAATGTCATTAGTGCAATGGAAACTGTATAAAAGATCCAAGTGGAAATTCTAGAACTAAAACAGATAATAACAAAGTCCATCAGAATTCTTTCCATACACTTATCAGCAGACCAGACACAGAGGAAGAAAACACCAGTGAACTTAAAGACATGCCAATAAAATTATCCAAACTGTAATGCAAAGAGAAAAAATCTGTGAAAAAATACAGCATCTAAAAATCTGAGGAGCAATATCAAATGGTTTAACAAAAACATAATTGGAGTTCCAAATAAATAAGAGAGAAAATGGAGCAAAAAAATTGATGAATAATGATTGAGAATTTTGCTAAATTGATAAACACATTTATCTGCGGTTCCAAGAAGCTCATTAAGCCCCAAGCAGGATAAATACAAAGAAAACCACACCAATATGCATCATAGTCAAAGTGCTAAAAGTCAAATATAATCTTGAAAGCAGCCTGAAGAAAAAAGTCACACTTTATACTCAAGTGAACAACAATCAGAATGAAGTAAGACTATTCATCAGAAACAGTGGAGAACAGAAGAAAATGAACTAACATTTTCAAATTCTAATAGAAAAAACTGTCAACCTAGATACTAAATCCAGTGAAAATATTCTTTATGAAGGAAGAAAAAATAAAGAAATTGTCAGACGACGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>CAAAAGCTGATTGGAAGTCTATTCTTCCACCCTTGCCAGCCTGCCAGGATGGTGTCAGAAAGGCCATGTAGAAAGCAGAGTTTCATCCCCACTGAGTGGTGAGAAGATTTTCTCAATGGATATCATATGAAGAGTCAGAACTTCACCATGTCACCCCTCAATTTGGCAGTAAAGAAGTACCTGTCCCCTCTCAGCAGGGTAGTGTCAGAAGAAGCCTATTGGAGAGTCAGGACTTTCACCACCACTCAATTGCCACAGGCCACCCCCATGGTGTCAATAGAGGATGAGTGGGGAGCTGGAAACCCCGCTTCCACCCGGCAATAATGAGGTTCCCTCCCCTCCCCGACTTGAGTGTCAACAGATGCTGAGGGGGAACTGAAAGAAAAAAATAGATTAACCCACAATTATAGTTAGAAACTTCTCTACTCTTTTCTCAACAACTGATAGAGCAACTAGACAGAAAATCAGCAAAGATATAAAAGAACTCAATGAAAGCATCAATCAAAAGGATTTAATTGACTTTAATAGAACATGCTACCTAATAACAGCAAGATGTACATTATTTTTATACATATCCAAGATAGACTATATGCTGGGCCATAAAACCTCAACAAATTTAAAATAATCGAAGTCATGCAAAGTGTATTCTGCTTCCACCCACCAAGTCTTACATTAGCCCATTTGCACACTGCTATAAAGAATTACCTGAGACTGGGTAATTTATAAAGAAAACAGGTTTAATTGATTTACAGTTCCACATGGCTTGGAAGGCCTCAGGAAACTTACAATCATGGCAGAAGGCAAAGGGAAAGCAAGGCACGTTTTACATGGCAGCAGGAGACAATGAAAGGGAAGAGCCATGCAATTATCAAAAAACCAGATCTTGTGAGAATTCTGTCATGAGAACAGCAAGGCAGAAGTCCGTCCCCATGATTCAATCACCTCCCACAAGGCCACTCTGCCAACACATGGGGATTACAATTTGAGATGGGATGTGGGTGGGGACACAGAACCAAACTATGTCAAGTCTTTTCCATAGGCCTTCACCAAGTGTCCCCAGAAATACTGGAAGCAAGGCAGGAGAGCTGCAAATGGTCCCTCATATACACATACACACAGAGCCAGGCACAGGCATTGAATGCCTGGTAGTCTGAGGATGGAGAGGAGAAGGGAAGAAACTCTTCTGGCACTCTGTCTTACAGTGAGTGCAACCAGTGGGCTCCTACTGTTGGAAGTAGGTAAAAGAGCTCAAGGAGTTTCCCCATATTAAGTATAGGTGTGTGGGACCTGCTGAGTGAAGAATGAAGGCAATGCAAGAGAACTGAGAAAATGACTCCAGACACACAACTCCAAAGCCCTCGGAAAGGGAATGCATTAAACCTACCCTTAATCATTTGAAGACTCTGCTGAATTAAATCTTGCTAGAGTAACAATATGGCCCAAACCTGGCTCAATTCAAAATAGTTTGACTCAGTGCCCACACTAGCAGTGTGACAGAAGAAGGGAAAAACACTCCTCTTGGCACAAATATTATTTATGTAGGTCTCTACATTTATCTTACACAGAATATACAGCATTCCGTCAAAACTATACGACATGCAAAGAAACAAGACCCATCATTTAAAAAAAGAAAGAGTCAAAAGAACCAGATTCACATATGATCCAAATGTCAGAATAATCAGAAAATTTTTTAAAAAGAATAGTCACAATAAGACATTAAAGGATCTAGCAGTGAAAGATACAGATGAGCAAATGGAAAATGTCATTAGTGCAATGGAAACTGTATAAAAGATCCAAGTGGAAATTCTAGAACTAAAACAGATAATAACAAAGTCCATCAGAATTCTTTCCATACACTTATCAGCAGACCAGACACAGAGGAAGAAAACACCAGTGAACTTAAAGACATGCCAATAAAATTATCCAAACTGTAATGCAAAGAGAAAAAATCTGTGAAAAAATACAGCATCTAAAAATCTGAGGAGCAATATCAAATGGTTTAACAAAAACATAATTGGAGTTCCAAATAAATAAGAGAGAAAATGGAGCAAAAAAATTGATGAATAATGATTGAGAATTTTGCTAAATTGATAAACACATTTATCTGCGGTTCCAAGAAGCTCATTAAGCCCCAAGCAGGATAAATACAAAGAAAACCACACCAATATGCATCATAGTCAAAGTGCTAAAAGTCAAATATAATCTTGAAAGCAGCCTGAAGAAAAAAGTCACACTTTATACTCAAGTGAACAACAATCAGAATGAAGTAAGACTATTCATCAGAAACAGTGGAGAACAGAAGAAAATGAACTAACATTTTCAAATTCTAATAGAAAAAACTGTCAACCTAGATACTAAATCCAGTGAAAATATTCTTTATGAAGGAAGAAAAAATAAAGAAATTGTCAGACGACGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:NONHSAG016520]]
+
[[Category:Intergenic]][[Category:NONHSAG016520]][[Category:Transcripts]]

Latest revision as of 21:53, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT041650

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2463 nt

Genomic location

chr15+:36633940..36636367

Exon number

1

Exons

36633940..36636367

Genome context

Sequence
000001 CAAAAGCTGA TTGGAAGTCT ATTCTTCCAC CCTTGCCAGC CTGCCAGGAT GGTGTCAGAA AGGCCATGTA GAAAGCAGAG 000080
000081 TTTCATCCCC ACTGAGTGGT GAGAAGATTT TCTCAATGGA TATCATATGA AGAGTCAGAA CTTCACCATG TCACCCCTCA 000160
000161 ATTTGGCAGT AAAGAAGTAC CTGTCCCCTC TCAGCAGGGT AGTGTCAGAA GAAGCCTATT GGAGAGTCAG GACTTTCACC 000240
000241 ACCACTCAAT TGCCACAGGC CACCCCCATG GTGTCAATAG AGGATGAGTG GGGAGCTGGA AACCCCGCTT CCACCCGGCA 000320
000321 ATAATGAGGT TCCCTCCCCT CCCCGACTTG AGTGTCAACA GATGCTGAGG GGGAACTGAA AGAAAAAAAT AGATTAACCC 000400
000401 ACAATTATAG TTAGAAACTT CTCTACTCTT TTCTCAACAA CTGATAGAGC AACTAGACAG AAAATCAGCA AAGATATAAA 000480
000481 AGAACTCAAT GAAAGCATCA ATCAAAAGGA TTTAATTGAC TTTAATAGAA CATGCTACCT AATAACAGCA AGATGTACAT 000560
000561 TATTTTTATA CATATCCAAG ATAGACTATA TGCTGGGCCA TAAAACCTCA ACAAATTTAA AATAATCGAA GTCATGCAAA 000640
000641 GTGTATTCTG CTTCCACCCA CCAAGTCTTA CATTAGCCCA TTTGCACACT GCTATAAAGA ATTACCTGAG ACTGGGTAAT 000720
000721 TTATAAAGAA AACAGGTTTA ATTGATTTAC AGTTCCACAT GGCTTGGAAG GCCTCAGGAA ACTTACAATC ATGGCAGAAG 000800
000801 GCAAAGGGAA AGCAAGGCAC GTTTTACATG GCAGCAGGAG ACAATGAAAG GGAAGAGCCA TGCAATTATC AAAAAACCAG 000880
000881 ATCTTGTGAG AATTCTGTCA TGAGAACAGC AAGGCAGAAG TCCGTCCCCA TGATTCAATC ACCTCCCACA AGGCCACTCT 000960
000961 GCCAACACAT GGGGATTACA ATTTGAGATG GGATGTGGGT GGGGACACAG AACCAAACTA TGTCAAGTCT TTTCCATAGG 001040
001041 CCTTCACCAA GTGTCCCCAG AAATACTGGA AGCAAGGCAG GAGAGCTGCA AATGGTCCCT CATATACACA TACACACAGA 001120
001121 GCCAGGCACA GGCATTGAAT GCCTGGTAGT CTGAGGATGG AGAGGAGAAG GGAAGAAACT CTTCTGGCAC TCTGTCTTAC 001200
001201 AGTGAGTGCA ACCAGTGGGC TCCTACTGTT GGAAGTAGGT AAAAGAGCTC AAGGAGTTTC CCCATATTAA GTATAGGTGT 001280
001281 GTGGGACCTG CTGAGTGAAG AATGAAGGCA ATGCAAGAGA ACTGAGAAAA TGACTCCAGA CACACAACTC CAAAGCCCTC 001360
001361 GGAAAGGGAA TGCATTAAAC CTACCCTTAA TCATTTGAAG ACTCTGCTGA ATTAAATCTT GCTAGAGTAA CAATATGGCC 001440
001441 CAAACCTGGC TCAATTCAAA ATAGTTTGAC TCAGTGCCCA CACTAGCAGT GTGACAGAAG AAGGGAAAAA CACTCCTCTT 001520
001521 GGCACAAATA TTATTTATGT AGGTCTCTAC ATTTATCTTA CACAGAATAT ACAGCATTCC GTCAAAACTA TACGACATGC 001600
001601 AAAGAAACAA GACCCATCAT TTAAAAAAAG AAAGAGTCAA AAGAACCAGA TTCACATATG ATCCAAATGT CAGAATAATC 001680
001681 AGAAAATTTT TTAAAAAGAA TAGTCACAAT AAGACATTAA AGGATCTAGC AGTGAAAGAT ACAGATGAGC AAATGGAAAA 001760
001761 TGTCATTAGT GCAATGGAAA CTGTATAAAA GATCCAAGTG GAAATTCTAG AACTAAAACA GATAATAACA AAGTCCATCA 001840
001841 GAATTCTTTC CATACACTTA TCAGCAGACC AGACACAGAG GAAGAAAACA CCAGTGAACT TAAAGACATG CCAATAAAAT 001920
001921 TATCCAAACT GTAATGCAAA GAGAAAAAAT CTGTGAAAAA ATACAGCATC TAAAAATCTG AGGAGCAATA TCAAATGGTT 002000
002001 TAACAAAAAC ATAATTGGAG TTCCAAATAA ATAAGAGAGA AAATGGAGCA AAAAAATTGA TGAATAATGA TTGAGAATTT 002080
002081 TGCTAAATTG ATAAACACAT TTATCTGCGG TTCCAAGAAG CTCATTAAGC CCCAAGCAGG ATAAATACAA AGAAAACCAC 002160
002161 ACCAATATGC ATCATAGTCA AAGTGCTAAA AGTCAAATAT AATCTTGAAA GCAGCCTGAA GAAAAAAGTC ACACTTTATA 002240
002241 CTCAAGTGAA CAACAATCAG AATGAAGTAA GACTATTCAT CAGAAACAGT GGAGAACAGA AGAAAATGAA CTAACATTTT 002320
002321 CAAATTCTAA TAGAAAAAAC TGTCAACCTA GATACTAAAT CCAGTGAAAA TATTCTTTAT GAAGGAAGAA AAAATAAAGA 002400
002401 AATTGTCAGA CGACGAAGGC TGAAAAAAAA AAAAAAAAAA AAAAAAGAAA AAAAAAAAAA AAA
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Predicted Small Protein

Name NONHSAT041650_smProtein_758:985
Length 76
Molecular weight 8490.657
Aromaticity 0.0666666666667
Instability index 67.7934666667
Isoelectric point 9.66168212891
Runs 11
Runs residual 0.0022695035461
Runs probability 0.0355382120088
Amino acid sequence MAWKASGNLQSWQKAKGKQGTFYMAAGDNEREEPCNYQKTRSCENSVMRTARQKSVPMIQ
SPPTRPLCQHMGITI
Secondary structure LLEELLLLHHHHHHHHLLLLEEEEELLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLL
LLLLLLLLLLLLEEL
PRMN -
PiMo -