Difference between revisions of "NONHSAT041650"
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sequence = <dnaseq>CAAAAGCTGATTGGAAGTCTATTCTTCCACCCTTGCCAGCCTGCCAGGATGGTGTCAGAAAGGCCATGTAGAAAGCAGAGTTTCATCCCCACTGAGTGGTGAGAAGATTTTCTCAATGGATATCATATGAAGAGTCAGAACTTCACCATGTCACCCCTCAATTTGGCAGTAAAGAAGTACCTGTCCCCTCTCAGCAGGGTAGTGTCAGAAGAAGCCTATTGGAGAGTCAGGACTTTCACCACCACTCAATTGCCACAGGCCACCCCCATGGTGTCAATAGAGGATGAGTGGGGAGCTGGAAACCCCGCTTCCACCCGGCAATAATGAGGTTCCCTCCCCTCCCCGACTTGAGTGTCAACAGATGCTGAGGGGGAACTGAAAGAAAAAAATAGATTAACCCACAATTATAGTTAGAAACTTCTCTACTCTTTTCTCAACAACTGATAGAGCAACTAGACAGAAAATCAGCAAAGATATAAAAGAACTCAATGAAAGCATCAATCAAAAGGATTTAATTGACTTTAATAGAACATGCTACCTAATAACAGCAAGATGTACATTATTTTTATACATATCCAAGATAGACTATATGCTGGGCCATAAAACCTCAACAAATTTAAAATAATCGAAGTCATGCAAAGTGTATTCTGCTTCCACCCACCAAGTCTTACATTAGCCCATTTGCACACTGCTATAAAGAATTACCTGAGACTGGGTAATTTATAAAGAAAACAGGTTTAATTGATTTACAGTTCCACATGGCTTGGAAGGCCTCAGGAAACTTACAATCATGGCAGAAGGCAAAGGGAAAGCAAGGCACGTTTTACATGGCAGCAGGAGACAATGAAAGGGAAGAGCCATGCAATTATCAAAAAACCAGATCTTGTGAGAATTCTGTCATGAGAACAGCAAGGCAGAAGTCCGTCCCCATGATTCAATCACCTCCCACAAGGCCACTCTGCCAACACATGGGGATTACAATTTGAGATGGGATGTGGGTGGGGACACAGAACCAAACTATGTCAAGTCTTTTCCATAGGCCTTCACCAAGTGTCCCCAGAAATACTGGAAGCAAGGCAGGAGAGCTGCAAATGGTCCCTCATATACACATACACACAGAGCCAGGCACAGGCATTGAATGCCTGGTAGTCTGAGGATGGAGAGGAGAAGGGAAGAAACTCTTCTGGCACTCTGTCTTACAGTGAGTGCAACCAGTGGGCTCCTACTGTTGGAAGTAGGTAAAAGAGCTCAAGGAGTTTCCCCATATTAAGTATAGGTGTGTGGGACCTGCTGAGTGAAGAATGAAGGCAATGCAAGAGAACTGAGAAAATGACTCCAGACACACAACTCCAAAGCCCTCGGAAAGGGAATGCATTAAACCTACCCTTAATCATTTGAAGACTCTGCTGAATTAAATCTTGCTAGAGTAACAATATGGCCCAAACCTGGCTCAATTCAAAATAGTTTGACTCAGTGCCCACACTAGCAGTGTGACAGAAGAAGGGAAAAACACTCCTCTTGGCACAAATATTATTTATGTAGGTCTCTACATTTATCTTACACAGAATATACAGCATTCCGTCAAAACTATACGACATGCAAAGAAACAAGACCCATCATTTAAAAAAAGAAAGAGTCAAAAGAACCAGATTCACATATGATCCAAATGTCAGAATAATCAGAAAATTTTTTAAAAAGAATAGTCACAATAAGACATTAAAGGATCTAGCAGTGAAAGATACAGATGAGCAAATGGAAAATGTCATTAGTGCAATGGAAACTGTATAAAAGATCCAAGTGGAAATTCTAGAACTAAAACAGATAATAACAAAGTCCATCAGAATTCTTTCCATACACTTATCAGCAGACCAGACACAGAGGAAGAAAACACCAGTGAACTTAAAGACATGCCAATAAAATTATCCAAACTGTAATGCAAAGAGAAAAAATCTGTGAAAAAATACAGCATCTAAAAATCTGAGGAGCAATATCAAATGGTTTAACAAAAACATAATTGGAGTTCCAAATAAATAAGAGAGAAAATGGAGCAAAAAAATTGATGAATAATGATTGAGAATTTTGCTAAATTGATAAACACATTTATCTGCGGTTCCAAGAAGCTCATTAAGCCCCAAGCAGGATAAATACAAAGAAAACCACACCAATATGCATCATAGTCAAAGTGCTAAAAGTCAAATATAATCTTGAAAGCAGCCTGAAGAAAAAAGTCACACTTTATACTCAAGTGAACAACAATCAGAATGAAGTAAGACTATTCATCAGAAACAGTGGAGAACAGAAGAAAATGAACTAACATTTTCAAATTCTAATAGAAAAAACTGTCAACCTAGATACTAAATCCAGTGAAAATATTCTTTATGAAGGAAGAAAAAATAAAGAAATTGTCAGACGACGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>CAAAAGCTGATTGGAAGTCTATTCTTCCACCCTTGCCAGCCTGCCAGGATGGTGTCAGAAAGGCCATGTAGAAAGCAGAGTTTCATCCCCACTGAGTGGTGAGAAGATTTTCTCAATGGATATCATATGAAGAGTCAGAACTTCACCATGTCACCCCTCAATTTGGCAGTAAAGAAGTACCTGTCCCCTCTCAGCAGGGTAGTGTCAGAAGAAGCCTATTGGAGAGTCAGGACTTTCACCACCACTCAATTGCCACAGGCCACCCCCATGGTGTCAATAGAGGATGAGTGGGGAGCTGGAAACCCCGCTTCCACCCGGCAATAATGAGGTTCCCTCCCCTCCCCGACTTGAGTGTCAACAGATGCTGAGGGGGAACTGAAAGAAAAAAATAGATTAACCCACAATTATAGTTAGAAACTTCTCTACTCTTTTCTCAACAACTGATAGAGCAACTAGACAGAAAATCAGCAAAGATATAAAAGAACTCAATGAAAGCATCAATCAAAAGGATTTAATTGACTTTAATAGAACATGCTACCTAATAACAGCAAGATGTACATTATTTTTATACATATCCAAGATAGACTATATGCTGGGCCATAAAACCTCAACAAATTTAAAATAATCGAAGTCATGCAAAGTGTATTCTGCTTCCACCCACCAAGTCTTACATTAGCCCATTTGCACACTGCTATAAAGAATTACCTGAGACTGGGTAATTTATAAAGAAAACAGGTTTAATTGATTTACAGTTCCACATGGCTTGGAAGGCCTCAGGAAACTTACAATCATGGCAGAAGGCAAAGGGAAAGCAAGGCACGTTTTACATGGCAGCAGGAGACAATGAAAGGGAAGAGCCATGCAATTATCAAAAAACCAGATCTTGTGAGAATTCTGTCATGAGAACAGCAAGGCAGAAGTCCGTCCCCATGATTCAATCACCTCCCACAAGGCCACTCTGCCAACACATGGGGATTACAATTTGAGATGGGATGTGGGTGGGGACACAGAACCAAACTATGTCAAGTCTTTTCCATAGGCCTTCACCAAGTGTCCCCAGAAATACTGGAAGCAAGGCAGGAGAGCTGCAAATGGTCCCTCATATACACATACACACAGAGCCAGGCACAGGCATTGAATGCCTGGTAGTCTGAGGATGGAGAGGAGAAGGGAAGAAACTCTTCTGGCACTCTGTCTTACAGTGAGTGCAACCAGTGGGCTCCTACTGTTGGAAGTAGGTAAAAGAGCTCAAGGAGTTTCCCCATATTAAGTATAGGTGTGTGGGACCTGCTGAGTGAAGAATGAAGGCAATGCAAGAGAACTGAGAAAATGACTCCAGACACACAACTCCAAAGCCCTCGGAAAGGGAATGCATTAAACCTACCCTTAATCATTTGAAGACTCTGCTGAATTAAATCTTGCTAGAGTAACAATATGGCCCAAACCTGGCTCAATTCAAAATAGTTTGACTCAGTGCCCACACTAGCAGTGTGACAGAAGAAGGGAAAAACACTCCTCTTGGCACAAATATTATTTATGTAGGTCTCTACATTTATCTTACACAGAATATACAGCATTCCGTCAAAACTATACGACATGCAAAGAAACAAGACCCATCATTTAAAAAAAGAAAGAGTCAAAAGAACCAGATTCACATATGATCCAAATGTCAGAATAATCAGAAAATTTTTTAAAAAGAATAGTCACAATAAGACATTAAAGGATCTAGCAGTGAAAGATACAGATGAGCAAATGGAAAATGTCATTAGTGCAATGGAAACTGTATAAAAGATCCAAGTGGAAATTCTAGAACTAAAACAGATAATAACAAAGTCCATCAGAATTCTTTCCATACACTTATCAGCAGACCAGACACAGAGGAAGAAAACACCAGTGAACTTAAAGACATGCCAATAAAATTATCCAAACTGTAATGCAAAGAGAAAAAATCTGTGAAAAAATACAGCATCTAAAAATCTGAGGAGCAATATCAAATGGTTTAACAAAAACATAATTGGAGTTCCAAATAAATAAGAGAGAAAATGGAGCAAAAAAATTGATGAATAATGATTGAGAATTTTGCTAAATTGATAAACACATTTATCTGCGGTTCCAAGAAGCTCATTAAGCCCCAAGCAGGATAAATACAAAGAAAACCACACCAATATGCATCATAGTCAAAGTGCTAAAAGTCAAATATAATCTTGAAAGCAGCCTGAAGAAAAAAGTCACACTTTATACTCAAGTGAACAACAATCAGAATGAAGTAAGACTATTCATCAGAAACAGTGGAGAACAGAAGAAAATGAACTAACATTTTCAAATTCTAATAGAAAAAACTGTCAACCTAGATACTAAATCCAGTGAAAATATTCTTTATGAAGGAAGAAAAAATAAAGAAATTGTCAGACGACGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG016520]] | + | [[Category:Intergenic]][[Category:NONHSAG016520]][[Category:Transcripts]] |
Latest revision as of 21:53, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041650 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2463 nt |
Genomic location |
chr15+:36633940..36636367 |
Exon number |
1 |
Exons |
36633940..36636367 |
Genome context |
|
Sequence |
000001 CAAAAGCTGA TTGGAAGTCT ATTCTTCCAC CCTTGCCAGC CTGCCAGGAT GGTGTCAGAA AGGCCATGTA GAAAGCAGAG 000080
000081 TTTCATCCCC ACTGAGTGGT GAGAAGATTT TCTCAATGGA TATCATATGA AGAGTCAGAA CTTCACCATG TCACCCCTCA 000160 000161 ATTTGGCAGT AAAGAAGTAC CTGTCCCCTC TCAGCAGGGT AGTGTCAGAA GAAGCCTATT GGAGAGTCAG GACTTTCACC 000240 000241 ACCACTCAAT TGCCACAGGC CACCCCCATG GTGTCAATAG AGGATGAGTG GGGAGCTGGA AACCCCGCTT CCACCCGGCA 000320 000321 ATAATGAGGT TCCCTCCCCT CCCCGACTTG AGTGTCAACA GATGCTGAGG GGGAACTGAA AGAAAAAAAT AGATTAACCC 000400 000401 ACAATTATAG TTAGAAACTT CTCTACTCTT TTCTCAACAA CTGATAGAGC AACTAGACAG AAAATCAGCA AAGATATAAA 000480 000481 AGAACTCAAT GAAAGCATCA ATCAAAAGGA TTTAATTGAC TTTAATAGAA CATGCTACCT AATAACAGCA AGATGTACAT 000560 000561 TATTTTTATA CATATCCAAG ATAGACTATA TGCTGGGCCA TAAAACCTCA ACAAATTTAA AATAATCGAA GTCATGCAAA 000640 000641 GTGTATTCTG CTTCCACCCA CCAAGTCTTA CATTAGCCCA TTTGCACACT GCTATAAAGA ATTACCTGAG ACTGGGTAAT 000720 000721 TTATAAAGAA AACAGGTTTA ATTGATTTAC AGTTCCACAT GGCTTGGAAG GCCTCAGGAA ACTTACAATC ATGGCAGAAG 000800 000801 GCAAAGGGAA AGCAAGGCAC GTTTTACATG GCAGCAGGAG ACAATGAAAG GGAAGAGCCA TGCAATTATC AAAAAACCAG 000880 000881 ATCTTGTGAG AATTCTGTCA TGAGAACAGC AAGGCAGAAG TCCGTCCCCA TGATTCAATC ACCTCCCACA AGGCCACTCT 000960 000961 GCCAACACAT GGGGATTACA ATTTGAGATG GGATGTGGGT GGGGACACAG AACCAAACTA TGTCAAGTCT TTTCCATAGG 001040 001041 CCTTCACCAA GTGTCCCCAG AAATACTGGA AGCAAGGCAG GAGAGCTGCA AATGGTCCCT CATATACACA TACACACAGA 001120 001121 GCCAGGCACA GGCATTGAAT GCCTGGTAGT CTGAGGATGG AGAGGAGAAG GGAAGAAACT CTTCTGGCAC TCTGTCTTAC 001200 001201 AGTGAGTGCA ACCAGTGGGC TCCTACTGTT GGAAGTAGGT AAAAGAGCTC AAGGAGTTTC CCCATATTAA GTATAGGTGT 001280 001281 GTGGGACCTG CTGAGTGAAG AATGAAGGCA ATGCAAGAGA ACTGAGAAAA TGACTCCAGA CACACAACTC CAAAGCCCTC 001360 001361 GGAAAGGGAA TGCATTAAAC CTACCCTTAA TCATTTGAAG ACTCTGCTGA ATTAAATCTT GCTAGAGTAA CAATATGGCC 001440 001441 CAAACCTGGC TCAATTCAAA ATAGTTTGAC TCAGTGCCCA CACTAGCAGT GTGACAGAAG AAGGGAAAAA CACTCCTCTT 001520 001521 GGCACAAATA TTATTTATGT AGGTCTCTAC ATTTATCTTA CACAGAATAT ACAGCATTCC GTCAAAACTA TACGACATGC 001600 001601 AAAGAAACAA GACCCATCAT TTAAAAAAAG AAAGAGTCAA AAGAACCAGA TTCACATATG ATCCAAATGT CAGAATAATC 001680 001681 AGAAAATTTT TTAAAAAGAA TAGTCACAAT AAGACATTAA AGGATCTAGC AGTGAAAGAT ACAGATGAGC AAATGGAAAA 001760 001761 TGTCATTAGT GCAATGGAAA CTGTATAAAA GATCCAAGTG GAAATTCTAG AACTAAAACA GATAATAACA AAGTCCATCA 001840 001841 GAATTCTTTC CATACACTTA TCAGCAGACC AGACACAGAG GAAGAAAACA CCAGTGAACT TAAAGACATG CCAATAAAAT 001920 001921 TATCCAAACT GTAATGCAAA GAGAAAAAAT CTGTGAAAAA ATACAGCATC TAAAAATCTG AGGAGCAATA TCAAATGGTT 002000 002001 TAACAAAAAC ATAATTGGAG TTCCAAATAA ATAAGAGAGA AAATGGAGCA AAAAAATTGA TGAATAATGA TTGAGAATTT 002080 002081 TGCTAAATTG ATAAACACAT TTATCTGCGG TTCCAAGAAG CTCATTAAGC CCCAAGCAGG ATAAATACAA AGAAAACCAC 002160 002161 ACCAATATGC ATCATAGTCA AAGTGCTAAA AGTCAAATAT AATCTTGAAA GCAGCCTGAA GAAAAAAGTC ACACTTTATA 002240 002241 CTCAAGTGAA CAACAATCAG AATGAAGTAA GACTATTCAT CAGAAACAGT GGAGAACAGA AGAAAATGAA CTAACATTTT 002320 002321 CAAATTCTAA TAGAAAAAAC TGTCAACCTA GATACTAAAT CCAGTGAAAA TATTCTTTAT GAAGGAAGAA AAAATAAAGA 002400 002401 AATTGTCAGA CGACGAAGGC TGAAAAAAAA AAAAAAAAAA AAAAAAGAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT041650_smProtein_758:985 |
Length | 76 |
Molecular weight | 8490.657 |
Aromaticity | 0.0666666666667 |
Instability index | 67.7934666667 |
Isoelectric point | 9.66168212891 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0355382120088 |
Amino acid sequence | MAWKASGNLQSWQKAKGKQGTFYMAAGDNEREEPCNYQKTRSCENSVMRTARQKSVPMIQ SPPTRPLCQHMGITI |
Secondary structure | LLEELLLLHHHHHHHHLLLLEEEEELLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLL LLLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |