Difference between revisions of "NONHSAT056210"

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sequence = <dnaseq>ACATTAGCCACACAGATGTGGGGGGAGATGTCCACAGGGAGAGAGAAGGTGCTAAGAGGTGCCATATGGGAATGTGGCTTGGGCAAAGCACTGATGCCATCAACTTCAGACTTGACGTCTTACTCCTGAGGCAGAGCAGGGTGTGCCTGTGGAGGGCGTGGGGAGGTGGCCCGTGGGGAGTGGACTGCCGCTTTAATCCCTTCAGCTGCCTTTCCGCTGTTGTTTTGATTTTTCTAGAGAGGAACATAAAAAGCATTCGTCCGGTTGCGCTTTCCTTTCTGTCAAGAAGCAGTTTGAAGAATTAACCCTTGGTGAATTTTTGAAACTGGACAGAGAAAGAGCCAAGAACAAAATTGCAAAGGAAACCAACAATAAGAAGAAAGAATTTGAGGAAACTGCGGAGAAAGTGCGCCGTGCCATCGAGCAGCTGGCTGCCATGGATTGAGGCCTCTGGCCGGAGCTGCCTGGTCCCAGAGTGGCTGCACCACTTCCAGGGTTTATTCCCTGGTGCCACCAGCCTTCCTGTGGGCCCCTTAGCAATGTCTTAGGAAAGGAGATCAACATTTTCAAATTAGATGTTTCAACTGTGCTCTTGTTTTGTCTTGAAAGTGGCACCAGAGGTGCTTCTGCCTGTGCAGCGGGTGCTGCTGGTAACAGTGGCTGCTTCTCTCTCTCTCTCTCTTTTTTGGGGGCTCATTTTTGCTGTTTTGATTCCCGGGCTTACCAGGTGAGAAGTGAGGGAGGAAG</dnaseq>|
 
sequence = <dnaseq>ACATTAGCCACACAGATGTGGGGGGAGATGTCCACAGGGAGAGAGAAGGTGCTAAGAGGTGCCATATGGGAATGTGGCTTGGGCAAAGCACTGATGCCATCAACTTCAGACTTGACGTCTTACTCCTGAGGCAGAGCAGGGTGTGCCTGTGGAGGGCGTGGGGAGGTGGCCCGTGGGGAGTGGACTGCCGCTTTAATCCCTTCAGCTGCCTTTCCGCTGTTGTTTTGATTTTTCTAGAGAGGAACATAAAAAGCATTCGTCCGGTTGCGCTTTCCTTTCTGTCAAGAAGCAGTTTGAAGAATTAACCCTTGGTGAATTTTTGAAACTGGACAGAGAAAGAGCCAAGAACAAAATTGCAAAGGAAACCAACAATAAGAAGAAAGAATTTGAGGAAACTGCGGAGAAAGTGCGCCGTGCCATCGAGCAGCTGGCTGCCATGGATTGAGGCCTCTGGCCGGAGCTGCCTGGTCCCAGAGTGGCTGCACCACTTCCAGGGTTTATTCCCTGGTGCCACCAGCCTTCCTGTGGGCCCCTTAGCAATGTCTTAGGAAAGGAGATCAACATTTTCAAATTAGATGTTTCAACTGTGCTCTTGTTTTGTCTTGAAAGTGGCACCAGAGGTGCTTCTGCCTGTGCAGCGGGTGCTGCTGGTAACAGTGGCTGCTTCTCTCTCTCTCTCTCTTTTTTGGGGGCTCATTTTTGCTGTTTTGATTCCCGGGCTTACCAGGTGAGAAGTGAGGGAGGAAG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG022883]][[Category:Transcripts]]
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[[Category:Sense]][[Category:NONHSAG022883]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 22:28, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT056210

Source

NONCODE4.0

Same with

,

Classification

sense

Length

747 nt

Genomic location

chr17+:76212508..76219937

Exon number

2

Exons

76212508..76212862,76219546..76219937

Genome context

Sequence
000001 ACATTAGCCA CACAGATGTG GGGGGAGATG TCCACAGGGA GAGAGAAGGT GCTAAGAGGT GCCATATGGG AATGTGGCTT 000080
000081 GGGCAAAGCA CTGATGCCAT CAACTTCAGA CTTGACGTCT TACTCCTGAG GCAGAGCAGG GTGTGCCTGT GGAGGGCGTG 000160
000161 GGGAGGTGGC CCGTGGGGAG TGGACTGCCG CTTTAATCCC TTCAGCTGCC TTTCCGCTGT TGTTTTGATT TTTCTAGAGA 000240
000241 GGAACATAAA AAGCATTCGT CCGGTTGCGC TTTCCTTTCT GTCAAGAAGC AGTTTGAAGA ATTAACCCTT GGTGAATTTT 000320
000321 TGAAACTGGA CAGAGAAAGA GCCAAGAACA AAATTGCAAA GGAAACCAAC AATAAGAAGA AAGAATTTGA GGAAACTGCG 000400
000401 GAGAAAGTGC GCCGTGCCAT CGAGCAGCTG GCTGCCATGG ATTGAGGCCT CTGGCCGGAG CTGCCTGGTC CCAGAGTGGC 000480
000481 TGCACCACTT CCAGGGTTTA TTCCCTGGTG CCACCAGCCT TCCTGTGGGC CCCTTAGCAA TGTCTTAGGA AAGGAGATCA 000560
000561 ACATTTTCAA ATTAGATGTT TCAACTGTGC TCTTGTTTTG TCTTGAAAGT GGCACCAGAG GTGCTTCTGC CTGTGCAGCG 000640
000641 GGTGCTGCTG GTAACAGTGG CTGCTTCTCT CTCTCTCTCT CTTTTTTGGG GGCTCATTTT TGCTGTTTTG ATTCCCGGGC 000720
000721 TTACCAGGTG AGAAGTGAGG GAGGAAG
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Predicted Small Protein

Name NONHSAT056210_smProtein_65:304
Length 80
Molecular weight 8971.492
Aromaticity 0.113924050633
Instability index 60.564556962
Isoelectric point 10.7059936523
Runs 9
Runs residual 0.0263568579851
Runs probability 0.0643094074467
Amino acid sequence MGMWLGQSTDAINFRLDVLLLRQSRVCLWRAWGGGPWGVDCRFNPFSCLSAVVLIFLERN
IKSIRPVALSFLSRSSLKN
Secondary structure LLLLLLLLLHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHL
LLLLLHHHHHHHHHHLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH
HHLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTT
TTiiiiiiiiiiiiiiiii