Difference between revisions of "NONHSAT056359"
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sequence = <dnaseq>GGTTAATTCTTGGATGACGTCGGCGTTGCTGGGAGAATGTGCCGTTCCTGCCCTGCCTCCACCCACCTCGGGAGCAGAAGCCCGGCCTGGACACCCCTCGGCCTGGACACCCCTCGAAGGAGAGGGCGCTTCCTTGATGACTAGGCTACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCCAGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACACTGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCACAGGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGGTCAGAAGGGCCCTCCGGACAGGCTGAGGGCAGGGCAGGAGCTGGGCAGAGCTGAATTTTGTAGAGGAGATGAGGGAATAGAGCTTGCCACTTTCTTCTCTCttttttttatttttattttttatttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctc</dnaseq>| | sequence = <dnaseq>GGTTAATTCTTGGATGACGTCGGCGTTGCTGGGAGAATGTGCCGTTCCTGCCCTGCCTCCACCCACCTCGGGAGCAGAAGCCCGGCCTGGACACCCCTCGGCCTGGACACCCCTCGAAGGAGAGGGCGCTTCCTTGATGACTAGGCTACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCCAGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACACTGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCACAGGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGGTCAGAAGGGCCCTCCGGACAGGCTGAGGGCAGGGCAGGAGCTGGGCAGAGCTGAATTTTGTAGAGGAGATGAGGGAATAGAGCTTGCCACTTTCTTCTCTCttttttttatttttattttttatttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG022946]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG022946]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:29, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT056359 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
565 nt |
| Genomic location |
chr17-:78180515..78183341 |
| Exon number |
3 |
| Exons |
78180515..78180853,78181396..78181484,78183205..78183341 |
| Genome context |
|
| Sequence |
000001 GGTTAATTCT TGGATGACGT CGGCGTTGCT GGGAGAATGT GCCGTTCCTG CCCTGCCTCC ACCCACCTCG GGAGCAGAAG 000080
000081 CCCGGCCTGG ACACCCCTCG GCCTGGACAC CCCTCGAAGG AGAGGGCGCT TCCTTGATGA CTAGGCTACT TTTGCCCACT 000160 000161 GTAAAAGGCA CCGTCATCCT GGTATCAAGA TTCTGGAGAG GCCAGATTTG AAATCAAGTT TGTTTGAGAC GTGGATGACG 000240 000241 ATGGGGAAGA TGTCCATCCT GTGCAGGGTG CAGACACTGT CCAGCTGGAC GTCCAGGAGG GCATGGGTGT TCTTTGTGGG 000320 000321 AGGGAGAGAA GAAGTGAGTC AAGATCACAG GCCTCAGAGG AAGCAAAGGG AGCCAACGCC CAGGTCAGAA GGGCCCTCCG 000400 000401 GACAGGCTGA GGGCAGGGCA GGAGCTGGGC AGAGCTGAAT TTTGTAGAGG AGATGAGGGA ATAGAGCTTG CCACTTTCTT 000480 000481 CTCTCttttt tttattttta ttttttattt ttttgagacg gagtctcgct ctgtcgccca ggctggagtg cagtggcgcg 000560 000561 atctc |
Predicted Small Protein
| Name | NONHSAT056359_smProtein_302:409 |
| Length | 36 |
| Molecular weight | 3818.2284 |
| Aromaticity | 0.0 |
| Instability index | 100.454285714 |
| Isoelectric point | 11.2509155273 |
| Runs | 5 |
| Runs residual | 0.0382566585956 |
| Runs probability | 0.0338632750397 |
| Amino acid sequence | MGVLCGRERRSESRSQASEEAKGANAQVRRALRTG |
| Secondary structure | LLEELLLLLLLLLHHHHHHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
