Difference between revisions of "NONHSAT059802"
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sequence = <dnaseq>atgtgacatcttgagttaagaactgctttgttcttctctcctctagaagccaaatgtcctccacagctttgcccagtgggacacatggctcctgacatacgtaacccaggatgggatgccttgttggagtctctcagatatggagcaaaatgggccatgtgcagtcaagacgccatctaccctgggcagcttgcctaagcctcgagggacctgccaatgatggatctgagacctcttctgtccctggctgcctatctGTCTGGTCCTCATCAAGAACCCAGTGTTCCCACCCGAGATGGAGACGTGAATAATCTTCCTAAGCCTAATCCTGCCAGAAGCGTGAAGCAAGGGGGAATTTGGAAGGCGGAACAGGAAAGAGTGGAAGTTTAGTTTACCGCTCTCCAAAATAGAAGCTCTTTTCCCTGAGATAGAAGCAAGATGCTGCAAGAGAAAGGGTCAGAGAAACTGGATTCAATTTTAATTTAGCCTGGATGCTGAAATAACCCTATCTCTACTAAATGCCAAATCTTCACATTCTCTTGGCCAACAAAGTGACTCCAGTGTTGCCACGGCAACCGTCTGTGGGTAGGCATGAAGGACAGCACCTCACCTTAGCTGCAGCAGCCCACACACACAGCTCACTTTCTGCCTGGACTCCTCTGCCTGCAGCTGGTATCGGGCCTGTTGGAATTTGCTCATCCATTTCATCGTGGGCCAGTGTGAAATGgcacagtggagtttctttgaggctacatggtgagagaagatgtcaccgctctgacTGACATACATAATGAtgtgtgtgtgtgtgtg</dnaseq>| | sequence = <dnaseq>atgtgacatcttgagttaagaactgctttgttcttctctcctctagaagccaaatgtcctccacagctttgcccagtgggacacatggctcctgacatacgtaacccaggatgggatgccttgttggagtctctcagatatggagcaaaatgggccatgtgcagtcaagacgccatctaccctgggcagcttgcctaagcctcgagggacctgccaatgatggatctgagacctcttctgtccctggctgcctatctGTCTGGTCCTCATCAAGAACCCAGTGTTCCCACCCGAGATGGAGACGTGAATAATCTTCCTAAGCCTAATCCTGCCAGAAGCGTGAAGCAAGGGGGAATTTGGAAGGCGGAACAGGAAAGAGTGGAAGTTTAGTTTACCGCTCTCCAAAATAGAAGCTCTTTTCCCTGAGATAGAAGCAAGATGCTGCAAGAGAAAGGGTCAGAGAAACTGGATTCAATTTTAATTTAGCCTGGATGCTGAAATAACCCTATCTCTACTAAATGCCAAATCTTCACATTCTCTTGGCCAACAAAGTGACTCCAGTGTTGCCACGGCAACCGTCTGTGGGTAGGCATGAAGGACAGCACCTCACCTTAGCTGCAGCAGCCCACACACACAGCTCACTTTCTGCCTGGACTCCTCTGCCTGCAGCTGGTATCGGGCCTGTTGGAATTTGCTCATCCATTTCATCGTGGGCCAGTGTGAAATGgcacagtggagtttctttgaggctacatggtgagagaagatgtcaccgctctgacTGACATACATAATGAtgtgtgtgtgtgtgtg</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG024134]] | + | [[Category:Intergenic]][[Category:NONHSAG024134]][[Category:Transcripts]] |
Latest revision as of 22:39, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059802 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
813 nt |
Genomic location |
chr18+:69477795..69504076 |
Exon number |
3 |
Exons |
69477795..69478051,69500338..69500807,69503991..69504076 |
Genome context |
|
Sequence |
000001 atgtgacatc ttgagttaag aactgctttg ttcttctctc ctctagaagc caaatgtcct ccacagcttt gcccagtggg 000080
000081 acacatggct cctgacatac gtaacccagg atgggatgcc ttgttggagt ctctcagata tggagcaaaa tgggccatgt 000160 000161 gcagtcaaga cgccatctac cctgggcagc ttgcctaagc ctcgagggac ctgccaatga tggatctgag acctcttctg 000240 000241 tccctggctg cctatctGTC TGGTCCTCAT CAAGAACCCA GTGTTCCCAC CCGAGATGGA GACGTGAATA ATCTTCCTAA 000320 000321 GCCTAATCCT GCCAGAAGCG TGAAGCAAGG GGGAATTTGG AAGGCGGAAC AGGAAAGAGT GGAAGTTTAG TTTACCGCTC 000400 000401 TCCAAAATAG AAGCTCTTTT CCCTGAGATA GAAGCAAGAT GCTGCAAGAG AAAGGGTCAG AGAAACTGGA TTCAATTTTA 000480 000481 ATTTAGCCTG GATGCTGAAA TAACCCTATC TCTACTAAAT GCCAAATCTT CACATTCTCT TGGCCAACAA AGTGACTCCA 000560 000561 GTGTTGCCAC GGCAACCGTC TGTGGGTAGG CATGAAGGAC AGCACCTCAC CTTAGCTGCA GCAGCCCACA CACACAGCTC 000640 000641 ACTTTCTGCC TGGACTCCTC TGCCTGCAGC TGGTATCGGG CCTGTTGGAA TTTGCTCATC CATTTCATCG TGGGCCAGTG 000720 000721 TGAAATGgca cagtggagtt tctttgaggc tacatggtga gagaagatgt caccgctctg acTGACATAC ATAATGAtgt 000800 000801 gtgtgtgtgt gtg |
Predicted Small Protein
Name | NONHSAT059802_smProtein_518:784 |
Length | 89 |
Molecular weight | 9409.6812 |
Aromaticity | 0.0340909090909 |
Instability index | 56.8568181818 |
Isoelectric point | 10.7630004883 |
Runs | 13 |
Runs residual | 0.0163636363636 |
Runs probability | 0.0401668636964 |
Amino acid sequence | MPNLHILLANKVTPVLPRQPSVGRHEGQHLTLAAAAHTHSSLSAWTPLPAAGIGPVGICS SISSWASVKWHSGVSLRLHGERRCHRSD |
Secondary structure | LLLLEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLEEEEE ELLLLLEEEELLLEEEEELLEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTT TTTTTTTiiiiiiiiiiiiiiiiiiiii |