Difference between revisions of "NONHSAT060810"

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sequence = <dnaseq>ttactgcttcgtaggagttcttGAATActaacaaattattatgagcaatgttcaagcatggaaataatttttgaaaaaatgtacaggaacattcatcagtaacattttactatactttgtcatatacatctctgtatcatccatcaattcatctttttaaatgcattttgaagtaggttgcagatagcttacatatcattaattagagttcaaaatttggggctggaagatctaaggtggctcatcccctggctagcaatgtggtgctggtgagttggttactggttacggggctgcttgagtctcctcatggcatggcggatggcttctcctagagaaagagcaatagaagagaccaaggaggaagcttcagtgtgtcttatgacctagcctcagatgtcacatgcaacagtgctgtattgatcatatgggtcgtgtatgattcaatattggaggtggggtacacaggacaggaatatcaggtggcaagggtctttggtgagcattctgaaggctagtcaacacaCCCACCTTTCCTTCAGACCACCTCTTTTCATCAGCCCGGAATCTCTTTTTTTGTGCTGGAGTGCCTGATCTGATTGTAGCTGTTTGAGGCATCTGGAATTCATGGCCGGGTTTAGAACAACTTGGAAGGtctcctttccccctcttctctttcttttacccttctcccctctctcttcctctcAGCCTTACCCCCAACTCTAGTCTTTCTTTGCTTCTAGTGAGCGAGCAGGAGATGCTCTGAGAGTCAACTGGGAATGCAGCTGATAAGGGTCTGCTGGGTGCAGGAAATGTTGGAAGGTTTGCTTGCTGGGCTGTATCACCTCCTGTATTATGGGAGCTTAGAGTATTTGCCAGCTTGTCAGGACTACCATCGTCTTCCATGTTCTGAGACTGGAGTACCCAACATTCCCCTAGCAGGGGACACTTGGCTTGATAGGGCTCTATCAATCTATATTGTGAGGGTAGAGATACTCATATTGCAAGGGGAGGCTGCAGGAGTTGCCTGCTGGGGCTAAGATTATTCCTTGTGTTTGGGATAAAGGAGGGGTCACCGCAGGGGCAGTCAACTCATGTTGGGGGAGACGGGATTTGCATTCTGGGCTCCCCTCCTCGTTTATGTTAAGGGTGTTGCTTGCTGATGCTTCTATTAACTCTTACTTTGGGATAATGGGAAGAGAGATAGTTTTCTGGGGTATGAGTTTGTCACTTATGTTGTAGAATCTGGGGGGCTGCCTGTTGAGATTCTGACCATTGCTTGTTTTGGGTGTCATTGCTGGGGATACTTATTTATAGTCTTGGGAAGACAAGGGATGCATGTTGCAGCGGTAGTGGGTAAGAATGGTGGCATTTG</dnaseq>|
 
sequence = <dnaseq>ttactgcttcgtaggagttcttGAATActaacaaattattatgagcaatgttcaagcatggaaataatttttgaaaaaatgtacaggaacattcatcagtaacattttactatactttgtcatatacatctctgtatcatccatcaattcatctttttaaatgcattttgaagtaggttgcagatagcttacatatcattaattagagttcaaaatttggggctggaagatctaaggtggctcatcccctggctagcaatgtggtgctggtgagttggttactggttacggggctgcttgagtctcctcatggcatggcggatggcttctcctagagaaagagcaatagaagagaccaaggaggaagcttcagtgtgtcttatgacctagcctcagatgtcacatgcaacagtgctgtattgatcatatgggtcgtgtatgattcaatattggaggtggggtacacaggacaggaatatcaggtggcaagggtctttggtgagcattctgaaggctagtcaacacaCCCACCTTTCCTTCAGACCACCTCTTTTCATCAGCCCGGAATCTCTTTTTTTGTGCTGGAGTGCCTGATCTGATTGTAGCTGTTTGAGGCATCTGGAATTCATGGCCGGGTTTAGAACAACTTGGAAGGtctcctttccccctcttctctttcttttacccttctcccctctctcttcctctcAGCCTTACCCCCAACTCTAGTCTTTCTTTGCTTCTAGTGAGCGAGCAGGAGATGCTCTGAGAGTCAACTGGGAATGCAGCTGATAAGGGTCTGCTGGGTGCAGGAAATGTTGGAAGGTTTGCTTGCTGGGCTGTATCACCTCCTGTATTATGGGAGCTTAGAGTATTTGCCAGCTTGTCAGGACTACCATCGTCTTCCATGTTCTGAGACTGGAGTACCCAACATTCCCCTAGCAGGGGACACTTGGCTTGATAGGGCTCTATCAATCTATATTGTGAGGGTAGAGATACTCATATTGCAAGGGGAGGCTGCAGGAGTTGCCTGCTGGGGCTAAGATTATTCCTTGTGTTTGGGATAAAGGAGGGGTCACCGCAGGGGCAGTCAACTCATGTTGGGGGAGACGGGATTTGCATTCTGGGCTCCCCTCCTCGTTTATGTTAAGGGTGTTGCTTGCTGATGCTTCTATTAACTCTTACTTTGGGATAATGGGAAGAGAGATAGTTTTCTGGGGTATGAGTTTGTCACTTATGTTGTAGAATCTGGGGGGCTGCCTGTTGAGATTCTGACCATTGCTTGTTTTGGGTGTCATTGCTGGGGATACTTATTTATAGTCTTGGGAAGACAAGGGATGCATGTTGCAGCGGTAGTGGGTAAGAATGGTGGCATTTG</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG024634]]
+
[[Category:Intergenic]][[Category:NONHSAG024634]][[Category:Transcripts]]

Latest revision as of 22:44, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT060810

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1378 nt

Genomic location

chr19-:7097220..7098597

Exon number

1

Exons

7097220..7098597

Genome context

Sequence
000001 ttactgcttc gtaggagttc ttGAATActa acaaattatt atgagcaatg ttcaagcatg gaaataattt ttgaaaaaat 000080
000081 gtacaggaac attcatcagt aacattttac tatactttgt catatacatc tctgtatcat ccatcaattc atctttttaa 000160
000161 atgcattttg aagtaggttg cagatagctt acatatcatt aattagagtt caaaatttgg ggctggaaga tctaaggtgg 000240
000241 ctcatcccct ggctagcaat gtggtgctgg tgagttggtt actggttacg gggctgcttg agtctcctca tggcatggcg 000320
000321 gatggcttct cctagagaaa gagcaataga agagaccaag gaggaagctt cagtgtgtct tatgacctag cctcagatgt 000400
000401 cacatgcaac agtgctgtat tgatcatatg ggtcgtgtat gattcaatat tggaggtggg gtacacagga caggaatatc 000480
000481 aggtggcaag ggtctttggt gagcattctg aaggctagtc aacacaCCCA CCTTTCCTTC AGACCACCTC TTTTCATCAG 000560
000561 CCCGGAATCT CTTTTTTTGT GCTGGAGTGC CTGATCTGAT TGTAGCTGTT TGAGGCATCT GGAATTCATG GCCGGGTTTA 000640
000641 GAACAACTTG GAAGGtctcc tttccccctc ttctctttct tttacccttc tcccctctct cttcctctcA GCCTTACCCC 000720
000721 CAACTCTAGT CTTTCTTTGC TTCTAGTGAG CGAGCAGGAG ATGCTCTGAG AGTCAACTGG GAATGCAGCT GATAAGGGTC 000800
000801 TGCTGGGTGC AGGAAATGTT GGAAGGTTTG CTTGCTGGGC TGTATCACCT CCTGTATTAT GGGAGCTTAG AGTATTTGCC 000880
000881 AGCTTGTCAG GACTACCATC GTCTTCCATG TTCTGAGACT GGAGTACCCA ACATTCCCCT AGCAGGGGAC ACTTGGCTTG 000960
000961 ATAGGGCTCT ATCAATCTAT ATTGTGAGGG TAGAGATACT CATATTGCAA GGGGAGGCTG CAGGAGTTGC CTGCTGGGGC 001040
001041 TAAGATTATT CCTTGTGTTT GGGATAAAGG AGGGGTCACC GCAGGGGCAG TCAACTCATG TTGGGGGAGA CGGGATTTGC 001120
001121 ATTCTGGGCT CCCCTCCTCG TTTATGTTAA GGGTGTTGCT TGCTGATGCT TCTATTAACT CTTACTTTGG GATAATGGGA 001200
001201 AGAGAGATAG TTTTCTGGGG TATGAGTTTG TCACTTATGT TGTAGAATCT GGGGGGCTGC CTGTTGAGAT TCTGACCATT 001280
001281 GCTTGTTTTG GGTGTCATTG CTGGGGATAC TTATTTATAG TCTTGGGAAG ACAAGGGATG CATGTTGCAG CGGTAGTGGG 001360
001361 TAAGAATGGT GGCATTTG
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Predicted Small Protein

Name NONHSAT060810_smProtein_782:1042
Length 87
Molecular weight 9653.1866
Aromaticity 0.104651162791
Instability index 49.2755813953
Isoelectric point 4.62969970703
Runs 11
Runs residual 0.0117146824019
Runs probability 0.042162483339
Amino acid sequence MQLIRVCWVQEMLEGLLAGLYHLLYYGSLEYLPACQDYHRLPCSETGVPNIPLAGDTWLD
RALSIYIVRVEILILQGEAAGVACWG
Secondary structure LLEEEEEHHHHHHHHHHHHHHHHHHHLLHHHLHHHHHHLLLLLLLLLLLLLLLLLLLHHH
HHHHEEEEEEEEEEEELLLLLLLLLL
PRMN -
PiMo -