Difference between revisions of "NONHSAT061490"
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sequence = <dnaseq>CGGCGAGGCTGAGGAAGGTCCAGCAAGAGCAAGAGTCTGAGGCGGAGGAGGCAAGCGCCAGTGCGGGAGCCCTGAGGGCAGACAGACCCGACCAAGGGGCGTGAAGGGCTCAGCCGCAGACAGGCCCGGCCTGACAGGGCCGGCGGGCAGGGCAGAAGGCAGGCCCGAGGCTGCCACAGCCCACAGGTGCTGCCATCTCTCCTGGGCACGGCGGTGGCCTCTTGGCAGCTAGCTGGGGCGGCACAGGCGCCTTGGACCTTGAGTCTCTGATGAGCTGGCCCCCTCCCTCAGGGGCATCAGGCCCCCAGTGCACCTTGGGGTTCGTGCGCCGAGTGACCTAGCGCCAGAGCTTCTGAGCAACGGTGCCGAGCGGTGTCAGGTCTCGGCCCACAGACGCCAGCGGTCGCCAGGCGGCCGCAGAGGGGCAGGGGATGAGTCAGGCCTTGGGAGCTGGGCCTGGCGGGAAGCAGGGTCCATGCACGGCCGAGCAGGTGGCGGCTCCCAAGGGAGGCCAGAGGGCGGCGAGCTGGCAGAGCTATGGCCCTGCTCTCCTGGCGGCAGCCCCACAGCGAGGCAGAGGCAGAGGGGTGGAGGGAAGCTGGTTACCTTTCCACCATGCGGTCTCGCTGCCGCTTTTTCTGCTTGTCCTGACTCTTCTTGCCTGCCTGCAACTTGCGCTTGGTCTGGCCATTTTCATCCTGGGTGGTTAGGGCCCCTGTGGGAGCAGATGGGCACTGTCACCAATTTGGCTCTGCCAGGACAGGGCAGGCCCTGCGGCCTCTGGCTGAATCACCCACTGTCCACTCCAGAGGGTCCATCGAGAATAGCTGTCCAAGCAAGGCCTCTGGCCATGAGCAGGGCTGGGTATCCTGGGCTGTGCAGGGAGTGGGTTTGGCCTAGGCCCCAAGGAGTGGGGGCCAGGCGATGACCCCTCCACTCTCCAGGACACCCATGCTCTCTGTGCAGTGGGCCAGGAGGAGGCTGGAAAGCAAAGAGGGGGTATCTTTGTGGGGACACTGGCACATGTTCAGAGGGGCCAGGTGGTGGGATGCAGGGAGGCTGCTCACATGGCCCTGCCCACCCCCAACCGGGCACCGCGGCAACAGTGGGCTGACGCTGGATTTGCTGTTAGGTACCTGCTGGCGCTCATCACTCAGGTGGGGGGACACGGAATCCCAACAGGGGCTGGAGAGGTGCTAAGGGAGAGGATACGCACACCAGAGCCGTAAAAACTGCACCGAGGGTCCCAGATCGGACACCAGCCACTGAGGACTTGGAACTGCGCGTTACTGAGGGACCGAGGGCAGGGGGCGTGCCTGGGGTTCCCCACACTTTTACTAGCTGCCCCCATCTGAAGGCAAAACCAGTGTGCTAGGCAGGGGTCACCACCATCCACAGCCTCCGCCTGGGAAGGAGGAGGAAGAGTGGGAAGGGGGTGGAGGCGGCGAAAAGAAAGCCCCCTGCCAGCACACACTCGGGCCCACAAGGGAGGTCCCCAACTGGCCGCATGTCTGCCGCAACCCTGCCCTCAGCTGGGTCCCTCCCACTGTGAGCCCCTGGAAGAGCCGCCCTAGCACCAGGCACCCCAGGAAAACTCACCCTTCTCTGGATCCTCTTTGCCTTCTTCTCTCCCATCCTCTTTTCCCTCCTCATCCTCTCCG</dnaseq>| | sequence = <dnaseq>CGGCGAGGCTGAGGAAGGTCCAGCAAGAGCAAGAGTCTGAGGCGGAGGAGGCAAGCGCCAGTGCGGGAGCCCTGAGGGCAGACAGACCCGACCAAGGGGCGTGAAGGGCTCAGCCGCAGACAGGCCCGGCCTGACAGGGCCGGCGGGCAGGGCAGAAGGCAGGCCCGAGGCTGCCACAGCCCACAGGTGCTGCCATCTCTCCTGGGCACGGCGGTGGCCTCTTGGCAGCTAGCTGGGGCGGCACAGGCGCCTTGGACCTTGAGTCTCTGATGAGCTGGCCCCCTCCCTCAGGGGCATCAGGCCCCCAGTGCACCTTGGGGTTCGTGCGCCGAGTGACCTAGCGCCAGAGCTTCTGAGCAACGGTGCCGAGCGGTGTCAGGTCTCGGCCCACAGACGCCAGCGGTCGCCAGGCGGCCGCAGAGGGGCAGGGGATGAGTCAGGCCTTGGGAGCTGGGCCTGGCGGGAAGCAGGGTCCATGCACGGCCGAGCAGGTGGCGGCTCCCAAGGGAGGCCAGAGGGCGGCGAGCTGGCAGAGCTATGGCCCTGCTCTCCTGGCGGCAGCCCCACAGCGAGGCAGAGGCAGAGGGGTGGAGGGAAGCTGGTTACCTTTCCACCATGCGGTCTCGCTGCCGCTTTTTCTGCTTGTCCTGACTCTTCTTGCCTGCCTGCAACTTGCGCTTGGTCTGGCCATTTTCATCCTGGGTGGTTAGGGCCCCTGTGGGAGCAGATGGGCACTGTCACCAATTTGGCTCTGCCAGGACAGGGCAGGCCCTGCGGCCTCTGGCTGAATCACCCACTGTCCACTCCAGAGGGTCCATCGAGAATAGCTGTCCAAGCAAGGCCTCTGGCCATGAGCAGGGCTGGGTATCCTGGGCTGTGCAGGGAGTGGGTTTGGCCTAGGCCCCAAGGAGTGGGGGCCAGGCGATGACCCCTCCACTCTCCAGGACACCCATGCTCTCTGTGCAGTGGGCCAGGAGGAGGCTGGAAAGCAAAGAGGGGGTATCTTTGTGGGGACACTGGCACATGTTCAGAGGGGCCAGGTGGTGGGATGCAGGGAGGCTGCTCACATGGCCCTGCCCACCCCCAACCGGGCACCGCGGCAACAGTGGGCTGACGCTGGATTTGCTGTTAGGTACCTGCTGGCGCTCATCACTCAGGTGGGGGGACACGGAATCCCAACAGGGGCTGGAGAGGTGCTAAGGGAGAGGATACGCACACCAGAGCCGTAAAAACTGCACCGAGGGTCCCAGATCGGACACCAGCCACTGAGGACTTGGAACTGCGCGTTACTGAGGGACCGAGGGCAGGGGGCGTGCCTGGGGTTCCCCACACTTTTACTAGCTGCCCCCATCTGAAGGCAAAACCAGTGTGCTAGGCAGGGGTCACCACCATCCACAGCCTCCGCCTGGGAAGGAGGAGGAAGAGTGGGAAGGGGGTGGAGGCGGCGAAAAGAAAGCCCCCTGCCAGCACACACTCGGGCCCACAAGGGAGGTCCCCAACTGGCCGCATGTCTGCCGCAACCCTGCCCTCAGCTGGGTCCCTCCCACTGTGAGCCCCTGGAAGAGCCGCCCTAGCACCAGGCACCCCAGGAAAACTCACCCTTCTCTGGATCCTCTTTGCCTTCTTCTCTCCCATCCTCTTTTCCCTCCTCATCCTCTCCG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG024996]][[Category:Transcripts]] | + | [[Category:Antisense]][[Category:NONHSAG024996]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:48, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT061490 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1661 nt |
Genomic location |
chr19+:15509507..15511167 |
Exon number |
1 |
Exons |
15509507..15511167 |
Genome context |
|
Sequence |
000001 CGGCGAGGCT GAGGAAGGTC CAGCAAGAGC AAGAGTCTGA GGCGGAGGAG GCAAGCGCCA GTGCGGGAGC CCTGAGGGCA 000080
000081 GACAGACCCG ACCAAGGGGC GTGAAGGGCT CAGCCGCAGA CAGGCCCGGC CTGACAGGGC CGGCGGGCAG GGCAGAAGGC 000160 000161 AGGCCCGAGG CTGCCACAGC CCACAGGTGC TGCCATCTCT CCTGGGCACG GCGGTGGCCT CTTGGCAGCT AGCTGGGGCG 000240 000241 GCACAGGCGC CTTGGACCTT GAGTCTCTGA TGAGCTGGCC CCCTCCCTCA GGGGCATCAG GCCCCCAGTG CACCTTGGGG 000320 000321 TTCGTGCGCC GAGTGACCTA GCGCCAGAGC TTCTGAGCAA CGGTGCCGAG CGGTGTCAGG TCTCGGCCCA CAGACGCCAG 000400 000401 CGGTCGCCAG GCGGCCGCAG AGGGGCAGGG GATGAGTCAG GCCTTGGGAG CTGGGCCTGG CGGGAAGCAG GGTCCATGCA 000480 000481 CGGCCGAGCA GGTGGCGGCT CCCAAGGGAG GCCAGAGGGC GGCGAGCTGG CAGAGCTATG GCCCTGCTCT CCTGGCGGCA 000560 000561 GCCCCACAGC GAGGCAGAGG CAGAGGGGTG GAGGGAAGCT GGTTACCTTT CCACCATGCG GTCTCGCTGC CGCTTTTTCT 000640 000641 GCTTGTCCTG ACTCTTCTTG CCTGCCTGCA ACTTGCGCTT GGTCTGGCCA TTTTCATCCT GGGTGGTTAG GGCCCCTGTG 000720 000721 GGAGCAGATG GGCACTGTCA CCAATTTGGC TCTGCCAGGA CAGGGCAGGC CCTGCGGCCT CTGGCTGAAT CACCCACTGT 000800 000801 CCACTCCAGA GGGTCCATCG AGAATAGCTG TCCAAGCAAG GCCTCTGGCC ATGAGCAGGG CTGGGTATCC TGGGCTGTGC 000880 000881 AGGGAGTGGG TTTGGCCTAG GCCCCAAGGA GTGGGGGCCA GGCGATGACC CCTCCACTCT CCAGGACACC CATGCTCTCT 000960 000961 GTGCAGTGGG CCAGGAGGAG GCTGGAAAGC AAAGAGGGGG TATCTTTGTG GGGACACTGG CACATGTTCA GAGGGGCCAG 001040 001041 GTGGTGGGAT GCAGGGAGGC TGCTCACATG GCCCTGCCCA CCCCCAACCG GGCACCGCGG CAACAGTGGG CTGACGCTGG 001120 001121 ATTTGCTGTT AGGTACCTGC TGGCGCTCAT CACTCAGGTG GGGGGACACG GAATCCCAAC AGGGGCTGGA GAGGTGCTAA 001200 001201 GGGAGAGGAT ACGCACACCA GAGCCGTAAA AACTGCACCG AGGGTCCCAG ATCGGACACC AGCCACTGAG GACTTGGAAC 001280 001281 TGCGCGTTAC TGAGGGACCG AGGGCAGGGG GCGTGCCTGG GGTTCCCCAC ACTTTTACTA GCTGCCCCCA TCTGAAGGCA 001360 001361 AAACCAGTGT GCTAGGCAGG GGTCACCACC ATCCACAGCC TCCGCCTGGG AAGGAGGAGG AAGAGTGGGA AGGGGGTGGA 001440 001441 GGCGGCGAAA AGAAAGCCCC CTGCCAGCAC ACACTCGGGC CCACAAGGGA GGTCCCCAAC TGGCCGCATG TCTGCCGCAA 001520 001521 CCCTGCCCTC AGCTGGGTCC CTCCCACTGT GAGCCCCTGG AAGAGCCGCC CTAGCACCAG GCACCCCAGG AAAACTCACC 001600 001601 CTTCTCTGGA TCCTCTTTGC CTTCTTCTCT CCCATCCTCT TTTCCCTCCT CATCCTCTCC G |
Predicted Small Protein
Name | NONHSAT061490_smProtein_431:709 |
Length | 93 |
Molecular weight | 9315.8094 |
Aromaticity | 0.0652173913043 |
Instability index | 54.1706521739 |
Isoelectric point | 9.84002685547 |
Runs | 12 |
Runs residual | 0.00477009696591 |
Runs probability | 0.0231849496556 |
Amino acid sequence | MSQALGAGPGGKQGPCTAEQVAAPKGGQRAASWQSYGPALLAAAPQRGRGRGVEGSWLPF HHAVSLPLFLLVLTLLACLQLALGLAIFILGG |
Secondary structure | LLLLLLLLLLLLLLLLLHHHLLLLLLLLEEEEHHHLLHHHHHHLLLLLLLLLLLLLLLLH HHHHLHHHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiTTTTTTTTTTTTTTTTTTTTTTTTToooo |