Difference between revisions of "NONHSAT067046"
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sequence = <dnaseq>ACAGAGCAGCCTGGCAGTGTCCAAGCAACAAGCCTCCGCTCCTCCTTCCTGCACCCTGGGGCTCCTGAAACTCACATGGGTAAAAAAGATACAGTAAAGACATAAATACCACATTTGACAAATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACGTGGATCCAGTAGGAACATAGATGCATCCAAACTCATTAGACTACAAGGATCACGGAAACTGTTGGTTGACAATAGCATACGGGAACTGCAATACACAAAAACTGGAATTTTTTTTCAGGCTGAGGCCTGTGTGACAAATGATACGGTATACAGGGAGCTACCCTGTGTTTCTGAGACCCTTTGTGACATCTCACATTTTTTCCAAGAAGATGATGAGACAGAGGCAGAGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGGTAAGAAAAGCTATTCCGTTGGAAAACTATTGGACGCTGTGTCTCAATATCACAGAGGAACATGAGAATTAGAGGAATTTGGGTGTTTTTCATCGAACTCAGGGGAGAATGAATGAGCTTATGCAATACTAGCAATGAATCCAGAAATTTTTGAAACAAACCTTAAGCAATGAGGTTTTCTTCCATGGAGGTGTCTAGAGAACCTATACACAAAAAGGCAATGAGCAATGCAATCGAAGACCAGTGGGTTATTGGTTAAGCTGTTACTCAATACATAAAACCAACCTAATTCTCTAGGAAACTGGCTGATGATGAGGCTGAAGGCCAcagtggggtcctgaggtttaacaccggggaggggagaatgcgtctatttgtagggtatgccaatttccaagggttgaatatccccatcatggcagatttcaaactaccaacgtgaagcccctgatgagggagttgaaagaacacatgcagaagtctgtcatcctgctttcaccacacagatacaagagacataaataacctcaagggcatagactgctgaaaagtgtagaaaaatgactggaaattggtatgttt</dnaseq>| | sequence = <dnaseq>ACAGAGCAGCCTGGCAGTGTCCAAGCAACAAGCCTCCGCTCCTCCTTCCTGCACCCTGGGGCTCCTGAAACTCACATGGGTAAAAAAGATACAGTAAAGACATAAATACCACATTTGACAAATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACGTGGATCCAGTAGGAACATAGATGCATCCAAACTCATTAGACTACAAGGATCACGGAAACTGTTGGTTGACAATAGCATACGGGAACTGCAATACACAAAAACTGGAATTTTTTTTCAGGCTGAGGCCTGTGTGACAAATGATACGGTATACAGGGAGCTACCCTGTGTTTCTGAGACCCTTTGTGACATCTCACATTTTTTCCAAGAAGATGATGAGACAGAGGCAGAGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGGTAAGAAAAGCTATTCCGTTGGAAAACTATTGGACGCTGTGTCTCAATATCACAGAGGAACATGAGAATTAGAGGAATTTGGGTGTTTTTCATCGAACTCAGGGGAGAATGAATGAGCTTATGCAATACTAGCAATGAATCCAGAAATTTTTGAAACAAACCTTAAGCAATGAGGTTTTCTTCCATGGAGGTGTCTAGAGAACCTATACACAAAAAGGCAATGAGCAATGCAATCGAAGACCAGTGGGTTATTGGTTAAGCTGTTACTCAATACATAAAACCAACCTAATTCTCTAGGAAACTGGCTGATGATGAGGCTGAAGGCCAcagtggggtcctgaggtttaacaccggggaggggagaatgcgtctatttgtagggtatgccaatttccaagggttgaatatccccatcatggcagatttcaaactaccaacgtgaagcccctgatgagggagttgaaagaacacatgcagaagtctgtcatcctgctttcaccacacagatacaagagacataaataacctcaagggcatagactgctgaaaagtgtagaaaaatgactggaaattggtatgttt</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG026158]] | + | [[Category:Sense]][[Category:NONHSAG026158]][[Category:Transcripts]] |
Latest revision as of 23:00, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT067046 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1047 nt |
| Genomic location |
chr19-:48737078..48753085 |
| Exon number |
4 |
| Exons |
48737078..48737800,48741640..48741783,48744219..48744320,48753008..48753085 |
| Genome context |
|
| Sequence |
000001 ACAGAGCAGC CTGGCAGTGT CCAAGCAACA AGCCTCCGCT CCTCCTTCCT GCACCCTGGG GCTCCTGAAA CTCACATGGG 000080
000081 TAAAAAAGAT ACAGTAAAGA CATAAATACC ACATTTGACA AATGGAAAAA AAGGAGTGTC CAGAAAAGAG TAGCAGCAGT 000160 000161 GAGGAAGAGC TGCCGAGACG TGGATCCAGT AGGAACATAG ATGCATCCAA ACTCATTAGA CTACAAGGAT CACGGAAACT 000240 000241 GTTGGTTGAC AATAGCATAC GGGAACTGCA ATACACAAAA ACTGGAATTT TTTTTCAGGC TGAGGCCTGT GTGACAAATG 000320 000321 ATACGGTATA CAGGGAGCTA CCCTGTGTTT CTGAGACCCT TTGTGACATC TCACATTTTT TCCAAGAAGA TGATGAGACA 000400 000401 GAGGCAGAGC CATTATTGTT CCGTGCTGTT CCTGAGTGTC AACTATCTGG GGGGGACATT CCCAGGTAAG AAAAGCTATT 000480 000481 CCGTTGGAAA ACTATTGGAC GCTGTGTCTC AATATCACAG AGGAACATGA GAATTAGAGG AATTTGGGTG TTTTTCATCG 000560 000561 AACTCAGGGG AGAATGAATG AGCTTATGCA ATACTAGCAA TGAATCCAGA AATTTTTGAA ACAAACCTTA AGCAATGAGG 000640 000641 TTTTCTTCCA TGGAGGTGTC TAGAGAACCT ATACACAAAA AGGCAATGAG CAATGCAATC GAAGACCAGT GGGTTATTGG 000720 000721 TTAAGCTGTT ACTCAATACA TAAAACCAAC CTAATTCTCT AGGAAACTGG CTGATGATGA GGCTGAAGGC CAcagtgggg 000800 000801 tcctgaggtt taacaccggg gaggggagaa tgcgtctatt tgtagggtat gccaatttcc aagggttgaa tatccccatc 000880 000881 atggcagatt tcaaactacc aacgtgaagc ccctgatgag ggagttgaaa gaacacatgc agaagtctgt catcctgctt 000960 000961 tcaccacaca gatacaagag acataaataa cctcaagggc atagactgct gaaaagtgta gaaaaatgac tggaaattgg 001040 001041 tatgttt |
Predicted Small Protein
| Name | NONHSAT067046_smProtein_317:529 |
| Length | 71 |
| Molecular weight | 8069.3293 |
| Aromaticity | 0.157142857143 |
| Instability index | 46.6371428571 |
| Isoelectric point | 10.2379760742 |
| Runs | 11 |
| Runs residual | 0.0123055162659 |
| Runs probability | 0.0491561079797 |
| Amino acid sequence | MIRYTGSYPVFLRPFVTSHIFSKKMMRQRQSHYCSVLFLSVNYLGGTFPGKKSYSVGKLL DAVSQYHRGT |
| Secondary structure | LEEELLLLLEEELLLLLLHHHHHHHHHHHLLEEEEEEEEEEELLLLLLLLLLLLLHHHHH HHHHHHHLLL |
| PRMN | - |
| PiMo | - |
