Difference between revisions of "NONHSAT067051"
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sequence = <dnaseq>tataatacaataaatgtatatatacagttttatatataacaactattatacatataatacaattatatatataGCTAACATCAGGATAGGCTGGTTGAGGATTTATATGAATCTTTGCTAATTTTGCATGTTTAAAATTATTTCAACATAAAAAAATTATATGGGTCATGTAGTTTTTTGTGCAGTTTAATTCTAGGCACCATAGTTTCTGTTTTAATGGGTGTATTTTCTTCTTTCAAGGAATTGGGATAGTCTGTTGTATTAAAAACCTATTCATTTTTGTACATTAAGATTCTTCTggccaggcgcaatggctcaagcctataatcccagcacttgggaacctgaggcaggcagatcacctgaggtcaggagttcaagaccagcatgtccaacatggtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcatggtggcacatgcctgtaatcccagctacttgggaggctgaggaggagactcactagaactcaggaagcagaggttgcagtgagccaagactgcgccactgcactctggcctaagcaacagagggagactccatctcaaaaaaaaaaaaaGATTATTTCTCTAACTTACTGGTTTATCTTTTATAGCTTATTTCAGGTGATTTGTTGTGTTTGTCTATAGAGTAAAATAACATGTCTAATGAGTTATAATTTAATGTCCTTCCATTCAATCACTGTATTTCAAATTTATTCCAATATTTTGGAATAAGCTTCCAATATTTTAACTTAAATAGGGAAGGTCATACTTGGTATTTTCCTGACCTCAGCTGGAATGCCTTCATAGTGTTCACATGAACACATTTGGCCTGAGAGAGACTTATTATGCCGAGAATGTGTGTAACCCTTTTTACTTAGGAATTGTGGGTGGAGTTTTTCCCCCCGCCCAAGAATGATTGTTAATTTCCGTCCATCATTTTCCTTTGATTGTTCTTCATCTCGAAAACaaataataaaataataaaataaataaataaaaCTTACTGGTCTTCTCACCTATTTTCTTGCAGTGCCTTTAAGCAATGCTCTGCCA</dnaseq>| | sequence = <dnaseq>tataatacaataaatgtatatatacagttttatatataacaactattatacatataatacaattatatatataGCTAACATCAGGATAGGCTGGTTGAGGATTTATATGAATCTTTGCTAATTTTGCATGTTTAAAATTATTTCAACATAAAAAAATTATATGGGTCATGTAGTTTTTTGTGCAGTTTAATTCTAGGCACCATAGTTTCTGTTTTAATGGGTGTATTTTCTTCTTTCAAGGAATTGGGATAGTCTGTTGTATTAAAAACCTATTCATTTTTGTACATTAAGATTCTTCTggccaggcgcaatggctcaagcctataatcccagcacttgggaacctgaggcaggcagatcacctgaggtcaggagttcaagaccagcatgtccaacatggtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcatggtggcacatgcctgtaatcccagctacttgggaggctgaggaggagactcactagaactcaggaagcagaggttgcagtgagccaagactgcgccactgcactctggcctaagcaacagagggagactccatctcaaaaaaaaaaaaaGATTATTTCTCTAACTTACTGGTTTATCTTTTATAGCTTATTTCAGGTGATTTGTTGTGTTTGTCTATAGAGTAAAATAACATGTCTAATGAGTTATAATTTAATGTCCTTCCATTCAATCACTGTATTTCAAATTTATTCCAATATTTTGGAATAAGCTTCCAATATTTTAACTTAAATAGGGAAGGTCATACTTGGTATTTTCCTGACCTCAGCTGGAATGCCTTCATAGTGTTCACATGAACACATTTGGCCTGAGAGAGACTTATTATGCCGAGAATGTGTGTAACCCTTTTTACTTAGGAATTGTGGGTGGAGTTTTTCCCCCCGCCCAAGAATGATTGTTAATTTCCGTCCATCATTTTCCTTTGATTGTTCTTCATCTCGAAAACaaataataaaataataaaataaataaataaaaCTTACTGGTCTTCTCACCTATTTTCTTGCAGTGCCTTTAAGCAATGCTCTGCCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG026159]] | + | [[Category:Intergenic]][[Category:NONHSAG026159]][[Category:Transcripts]] |
Latest revision as of 23:00, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT067051 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1073 nt |
| Genomic location |
chr19+:48760438..48761510 |
| Exon number |
1 |
| Exons |
48760438..48761510 |
| Genome context |
|
| Sequence |
000001 tataatacaa taaatgtata tatacagttt tatatataac aactattata catataatac aattatatat ataGCTAACA 000080
000081 TCAGGATAGG CTGGTTGAGG ATTTATATGA ATCTTTGCTA ATTTTGCATG TTTAAAATTA TTTCAACATA AAAAAATTAT 000160 000161 ATGGGTCATG TAGTTTTTTG TGCAGTTTAA TTCTAGGCAC CATAGTTTCT GTTTTAATGG GTGTATTTTC TTCTTTCAAG 000240 000241 GAATTGGGAT AGTCTGTTGT ATTAAAAACC TATTCATTTT TGTACATTAA GATTCTTCTg gccaggcgca atggctcaag 000320 000321 cctataatcc cagcacttgg gaacctgagg caggcagatc acctgaggtc aggagttcaa gaccagcatg tccaacatgg 000400 000401 tgaaacccca tctctactaa aaatacaaaa aaaattagcc aggcatggtg gcacatgcct gtaatcccag ctacttggga 000480 000481 ggctgaggag gagactcact agaactcagg aagcagaggt tgcagtgagc caagactgcg ccactgcact ctggcctaag 000560 000561 caacagaggg agactccatc tcaaaaaaaa aaaaaGATTA TTTCTCTAAC TTACTGGTTT ATCTTTTATA GCTTATTTCA 000640 000641 GGTGATTTGT TGTGTTTGTC TATAGAGTAA AATAACATGT CTAATGAGTT ATAATTTAAT GTCCTTCCAT TCAATCACTG 000720 000721 TATTTCAAAT TTATTCCAAT ATTTTGGAAT AAGCTTCCAA TATTTTAACT TAAATAGGGA AGGTCATACT TGGTATTTTC 000800 000801 CTGACCTCAG CTGGAATGCC TTCATAGTGT TCACATGAAC ACATTTGGCC TGAGAGAGAC TTATTATGCC GAGAATGTGT 000880 000881 GTAACCCTTT TTACTTAGGA ATTGTGGGTG GAGTTTTTCC CCCCGCCCAA GAATGATTGT TAATTTCCGT CCATCATTTT 000960 000961 CCTTTGATTG TTCTTCATCT CGAAAACaaa taataaaata ataaaataaa taaataaaaC TTACTGGTCT TCTCACCTAT 001040 001041 TTTCTTGCAG TGCCTTTAAG CAATGCTCTG CCA |
Predicted Small Protein
| Name | NONHSAT067051_smProtein_932:1000 |
| Length | 23 |
| Molecular weight | 2591.0163 |
| Aromaticity | 0.136363636364 |
| Instability index | 55.1227272727 |
| Isoelectric point | 10.0521850586 |
| Runs | 6 |
| Runs residual | 0.0363636363636 |
| Runs probability | 0.0233174350822 |
| Amino acid sequence | MIVNFRPSFSFDCSSSRKQIIK |
| Secondary structure | LEEEELLLLLLLLLLLHHHEEL |
| PRMN | - |
| PiMo | - |
