Difference between revisions of "NONHSAT072743"
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sequence = <dnaseq>CTCTTTCTAGGGACTTTCCTGAGTGGGAGGGATTTCGCCGGAACAAAAATGCCTCAGTTTGGAGGTCGCGCTCACTGCGACGGCAGGCTTTGAGTGTAGCACTTGGTAGTTCTTCCTCTGCTCTGCTTCCCTTCGGAGGAAAATTTCAGGCTGAAGGTTTAGCGGGTGCCGCCTCTAAAGAGAGCAATCACTACACTTATGGCTGGGATTTTGCGCTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGACTGTGACAAAAGGTGTGGAGTCTCTTATTTGTACAGATTGGATTCGTCACAAATTCACCAGATCAAGAATTCCAGAAAAAGTGTTTCAGGCCTCACCTGAAGATCATGAAAAATACGGTGGGGATCCACAGAACCCTCATAAACTGCATATTGTTACCAGAATAAAAAGTACAAGAAGACGTCCATATTGGGAAAAAGATATAATAAAGATGCTTGGATTAGAAAAAGCACATACCCCTCAAGTTCACAAGAATATCCCTTCAGTGAATGCAAAATTGAAAGTAGTTAAGCATTTGATAAGAATCAAGCCCTTGAAGTTGCCACAAGGACTTCCAGCAGAGGAGAACATGTCTAACACGTGCCTCAAAAGCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGCAGAAAGCACATGAGTCCTAATGCCCCAGCAGCTTCCGATTGGAAAATGCAAATTGTTTTTATTTAAAGATGATACCTGGAGGGGTGGGGAGAAGTAAGAATTGTAAGGGAGGTTCAGTAGTGGGGAATTCTGTGACAGCTGATTGAAGATGATGATGAAGAACCTCTGCATTCTAGTTACCCTTTGCTTCCCTTCACCTCTTGTAAAATTTGGCTTGGCAACAATGACATTGTCATGCTTATTGTCCCAATATCCATCCTGTCGTAGATCTTAATGTTTTTGATCGTTGCGTTAAAGTGGAAGTGCCACCCACAGTGAAACCAGATCCCATTAATAAATAAGCTTAAAGGCAACTGCAGTTTTAATTCCATAGTTATTGAATATCCAGTGTGTGTAAGGCCTGGAGGGGAGCCAAAGGACACTAACTTCTAAGAGCTCCGTCTAGTTGGAGAGAAACCTGTGTGCCACAACATACAGTGTCCTTGCTTATGTGGGGTCGAAGACATCTGTGAAAATAAAAGCAGCCTCTGCTAATTTAGCGCCATCTCTTTTACTGTGCTAATTTTTTTTTCTTTAGAGACAGGGTCTCACTCTGTCGCCCAGCCTGGAGGGCAGTGGTGTGATCGTAGCTCACTATTACCTCCAACTCTTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGCAGCTAGGACTACAGATACATGCCACCGCTCCCGGCTAGTATTTTTTAAAATTTTTTGTAGAGCCAAGTGTTGCTATGTTGTCCACACTGATCTGGAGCTTCTAATCTCAAATGATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGAATACAGGTGTGAGCCACCATACCTGGCCTTACTGTACTAATATTAATATTGTGTAAATAGGGGAAAATACCATGGTTAATTTTTACTCAAACAGTAAGAAAGTTTGAGTAACTAATTTTAATCTCAACAGCCCATAGCTAGAAGAGGGGATCTAAATGTTAAGTTGAATATTTAGAAATAAAAGTGTCTACAAGAAGAAAAGTCTTTAGTGAAAATATGGGCATAGGCCAGCAGCATTAGCTTTCTATTGCTGCAGAACAAATTACCACAAACTTAGCTGCTTAAAACAACACACACTTATTGTCTCACAATGTTTGTGGGTCGGAAGTCTAGGCGTGGCTTAGCTGGGTAGTCTGTTTAGGATCTCAGTGCTGGAAAAACGTGTCTGGCCAGGTGCTCATTGTAGCTTTGACAGGGAAGGGATCTGCTCCCAAGCACTCTCAGGTTGTTGGCAGAATTTGTTTCCTTATGGCTGTAGGATTCATGGCAAGTTGCTTCTTCCAAAACCAGCATTGGAGACAGACTAGCAAGATGGGCACTACACTCTTAGATAATCAAATAAATGCAATCATGTGCCTCGTGTCACCTTTTTTGCATTCCATTCATTAAGAACAAGTTGCAGTTCCTACCTACACTCAAGGAAGGGAGGAATTACACAGAAGTGTGACCACAGGAGGCAGGGCTCATGGAGGCCTCCTTAAAGTCCCCCAGCCAAACCTGAAAAGTCAATCCTGGACCTTATCATAGTGGCTGTATAGTTTAGAAGGTTTCTTCAGATTGGCATTCCTTTGCCTCATATCATCACTTCAAAACCCTATAAGGGTTTGTTCCTCGGTCTTGACTTTGTGTCTTTGAGGATTGCTTTGTTTAGTGTCACCTGCCTTCTTTCAGGAGGTTTTGCCTGACATCTGGTGGTGACCGTGGCCACCAAGTCAACCCAAACACTACCTTTAAGGACGACTGCAGTTCTCTTAGGGTCTCCTCAATCTAAAATTGTACCTCTTTCAGGCCAAACACCTATTTTCTTCATTTTTTTTTTCTCATAAGAATGCTAGCTAGTATGCCTATTATCTAACTGGCACAGTTTCACCAAGGACAGTTTGGAACTACACAGGCCATTTTAGGGAGATTTTGACATGAACAAGATTGCTTCTTTGGGAGGTACCTTAAAATGAAAAGCAAAGAAACTTCCATGCGGAGATTGTCTTGTTTTTCTCAAAATGGGATAATTTTGCTTAACATAAGTAGTATCCCTTCCTTCCTTTCCATACTTTGAGAATTAATAAGGACTAGCTTTTTGATCACACAGCTTGATAAAATTTTCAAGGGTCCAAATTACTGTCTAAACCATTTGCCACTCTTTGTGTATATTTGTCAAAATCTGCTTTTCTATATCAAAACTTTTCTCTCAAGACCTGAGGGAATTAATTAATAAGGAATCCTTGGAACACTGGAAATTCTAAAATAAGAGTCAGATACAAAACACTGGTCACTAAAATTCTTACCTTTATGTATTAGAATGGCAATCAATGAACAAACTGAAAATGTCTTTGGATATTATTTCTGTTTATTTTTTGCCTCAAAATTATTAAATGACATGAAATAAGTGCTCAAGAAGAAAAATAAACAATTCTTCATTTCC</dnaseq>| | sequence = <dnaseq>CTCTTTCTAGGGACTTTCCTGAGTGGGAGGGATTTCGCCGGAACAAAAATGCCTCAGTTTGGAGGTCGCGCTCACTGCGACGGCAGGCTTTGAGTGTAGCACTTGGTAGTTCTTCCTCTGCTCTGCTTCCCTTCGGAGGAAAATTTCAGGCTGAAGGTTTAGCGGGTGCCGCCTCTAAAGAGAGCAATCACTACACTTATGGCTGGGATTTTGCGCTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGACTGTGACAAAAGGTGTGGAGTCTCTTATTTGTACAGATTGGATTCGTCACAAATTCACCAGATCAAGAATTCCAGAAAAAGTGTTTCAGGCCTCACCTGAAGATCATGAAAAATACGGTGGGGATCCACAGAACCCTCATAAACTGCATATTGTTACCAGAATAAAAAGTACAAGAAGACGTCCATATTGGGAAAAAGATATAATAAAGATGCTTGGATTAGAAAAAGCACATACCCCTCAAGTTCACAAGAATATCCCTTCAGTGAATGCAAAATTGAAAGTAGTTAAGCATTTGATAAGAATCAAGCCCTTGAAGTTGCCACAAGGACTTCCAGCAGAGGAGAACATGTCTAACACGTGCCTCAAAAGCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGCAGAAAGCACATGAGTCCTAATGCCCCAGCAGCTTCCGATTGGAAAATGCAAATTGTTTTTATTTAAAGATGATACCTGGAGGGGTGGGGAGAAGTAAGAATTGTAAGGGAGGTTCAGTAGTGGGGAATTCTGTGACAGCTGATTGAAGATGATGATGAAGAACCTCTGCATTCTAGTTACCCTTTGCTTCCCTTCACCTCTTGTAAAATTTGGCTTGGCAACAATGACATTGTCATGCTTATTGTCCCAATATCCATCCTGTCGTAGATCTTAATGTTTTTGATCGTTGCGTTAAAGTGGAAGTGCCACCCACAGTGAAACCAGATCCCATTAATAAATAAGCTTAAAGGCAACTGCAGTTTTAATTCCATAGTTATTGAATATCCAGTGTGTGTAAGGCCTGGAGGGGAGCCAAAGGACACTAACTTCTAAGAGCTCCGTCTAGTTGGAGAGAAACCTGTGTGCCACAACATACAGTGTCCTTGCTTATGTGGGGTCGAAGACATCTGTGAAAATAAAAGCAGCCTCTGCTAATTTAGCGCCATCTCTTTTACTGTGCTAATTTTTTTTTCTTTAGAGACAGGGTCTCACTCTGTCGCCCAGCCTGGAGGGCAGTGGTGTGATCGTAGCTCACTATTACCTCCAACTCTTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGCAGCTAGGACTACAGATACATGCCACCGCTCCCGGCTAGTATTTTTTAAAATTTTTTGTAGAGCCAAGTGTTGCTATGTTGTCCACACTGATCTGGAGCTTCTAATCTCAAATGATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGAATACAGGTGTGAGCCACCATACCTGGCCTTACTGTACTAATATTAATATTGTGTAAATAGGGGAAAATACCATGGTTAATTTTTACTCAAACAGTAAGAAAGTTTGAGTAACTAATTTTAATCTCAACAGCCCATAGCTAGAAGAGGGGATCTAAATGTTAAGTTGAATATTTAGAAATAAAAGTGTCTACAAGAAGAAAAGTCTTTAGTGAAAATATGGGCATAGGCCAGCAGCATTAGCTTTCTATTGCTGCAGAACAAATTACCACAAACTTAGCTGCTTAAAACAACACACACTTATTGTCTCACAATGTTTGTGGGTCGGAAGTCTAGGCGTGGCTTAGCTGGGTAGTCTGTTTAGGATCTCAGTGCTGGAAAAACGTGTCTGGCCAGGTGCTCATTGTAGCTTTGACAGGGAAGGGATCTGCTCCCAAGCACTCTCAGGTTGTTGGCAGAATTTGTTTCCTTATGGCTGTAGGATTCATGGCAAGTTGCTTCTTCCAAAACCAGCATTGGAGACAGACTAGCAAGATGGGCACTACACTCTTAGATAATCAAATAAATGCAATCATGTGCCTCGTGTCACCTTTTTTGCATTCCATTCATTAAGAACAAGTTGCAGTTCCTACCTACACTCAAGGAAGGGAGGAATTACACAGAAGTGTGACCACAGGAGGCAGGGCTCATGGAGGCCTCCTTAAAGTCCCCCAGCCAAACCTGAAAAGTCAATCCTGGACCTTATCATAGTGGCTGTATAGTTTAGAAGGTTTCTTCAGATTGGCATTCCTTTGCCTCATATCATCACTTCAAAACCCTATAAGGGTTTGTTCCTCGGTCTTGACTTTGTGTCTTTGAGGATTGCTTTGTTTAGTGTCACCTGCCTTCTTTCAGGAGGTTTTGCCTGACATCTGGTGGTGACCGTGGCCACCAAGTCAACCCAAACACTACCTTTAAGGACGACTGCAGTTCTCTTAGGGTCTCCTCAATCTAAAATTGTACCTCTTTCAGGCCAAACACCTATTTTCTTCATTTTTTTTTTCTCATAAGAATGCTAGCTAGTATGCCTATTATCTAACTGGCACAGTTTCACCAAGGACAGTTTGGAACTACACAGGCCATTTTAGGGAGATTTTGACATGAACAAGATTGCTTCTTTGGGAGGTACCTTAAAATGAAAAGCAAAGAAACTTCCATGCGGAGATTGTCTTGTTTTTCTCAAAATGGGATAATTTTGCTTAACATAAGTAGTATCCCTTCCTTCCTTTCCATACTTTGAGAATTAATAAGGACTAGCTTTTTGATCACACAGCTTGATAAAATTTTCAAGGGTCCAAATTACTGTCTAAACCATTTGCCACTCTTTGTGTATATTTGTCAAAATCTGCTTTTCTATATCAAAACTTTTCTCTCAAGACCTGAGGGAATTAATTAATAAGGAATCCTTGGAACACTGGAAATTCTAAAATAAGAGTCAGATACAAAACACTGGTCACTAAAATTCTTACCTTTATGTATTAGAATGGCAATCAATGAACAAACTGAAAATGTCTTTGGATATTATTTCTGTTTATTTTTTGCCTCAAAATTATTAAATGACATGAAATAAGTGCTCAAGAAGAAAAATAAACAATTCTTCATTTCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG028691]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG028691]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:28, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072743 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3139 nt |
Genomic location |
chr2+:99797542..99816020 |
Exon number |
7 |
Exons |
99797542..99797712,99802640..99802717,99804640..99804720,99811214..99811360,99811579..99811652,99812036..99812219,99813617..99816020 |
Genome context |
|
Sequence |
000001 CTCTTTCTAG GGACTTTCCT GAGTGGGAGG GATTTCGCCG GAACAAAAAT GCCTCAGTTT GGAGGTCGCG CTCACTGCGA 000080
000081 CGGCAGGCTT TGAGTGTAGC ACTTGGTAGT TCTTCCTCTG CTCTGCTTCC CTTCGGAGGA AAATTTCAGG CTGAAGGTTT 000160 000161 AGCGGGTGCC GCCTCTAAAG AGAGCAATCA CTACACTTAT GGCTGGGATT TTGCGCTTAG TAGTTCAATG GCCCCCAGGC 000240 000241 AGACTACAGA CTGTGACAAA AGGTGTGGAG TCTCTTATTT GTACAGATTG GATTCGTCAC AAATTCACCA GATCAAGAAT 000320 000321 TCCAGAAAAA GTGTTTCAGG CCTCACCTGA AGATCATGAA AAATACGGTG GGGATCCACA GAACCCTCAT AAACTGCATA 000400 000401 TTGTTACCAG AATAAAAAGT ACAAGAAGAC GTCCATATTG GGAAAAAGAT ATAATAAAGA TGCTTGGATT AGAAAAAGCA 000480 000481 CATACCCCTC AAGTTCACAA GAATATCCCT TCAGTGAATG CAAAATTGAA AGTAGTTAAG CATTTGATAA GAATCAAGCC 000560 000561 CTTGAAGTTG CCACAAGGAC TTCCAGCAGA GGAGAACATG TCTAACACGT GCCTCAAAAG CACTGGGGAG TTAGTAGTGC 000640 000641 AGTGGCATCT GAAACCTGTG GAGCAGAAAG CACATGAGTC CTAATGCCCC AGCAGCTTCC GATTGGAAAA TGCAAATTGT 000720 000721 TTTTATTTAA AGATGATACC TGGAGGGGTG GGGAGAAGTA AGAATTGTAA GGGAGGTTCA GTAGTGGGGA ATTCTGTGAC 000800 000801 AGCTGATTGA AGATGATGAT GAAGAACCTC TGCATTCTAG TTACCCTTTG CTTCCCTTCA CCTCTTGTAA AATTTGGCTT 000880 000881 GGCAACAATG ACATTGTCAT GCTTATTGTC CCAATATCCA TCCTGTCGTA GATCTTAATG TTTTTGATCG TTGCGTTAAA 000960 000961 GTGGAAGTGC CACCCACAGT GAAACCAGAT CCCATTAATA AATAAGCTTA AAGGCAACTG CAGTTTTAAT TCCATAGTTA 001040 001041 TTGAATATCC AGTGTGTGTA AGGCCTGGAG GGGAGCCAAA GGACACTAAC TTCTAAGAGC TCCGTCTAGT TGGAGAGAAA 001120 001121 CCTGTGTGCC ACAACATACA GTGTCCTTGC TTATGTGGGG TCGAAGACAT CTGTGAAAAT AAAAGCAGCC TCTGCTAATT 001200 001201 TAGCGCCATC TCTTTTACTG TGCTAATTTT TTTTTCTTTA GAGACAGGGT CTCACTCTGT CGCCCAGCCT GGAGGGCAGT 001280 001281 GGTGTGATCG TAGCTCACTA TTACCTCCAA CTCTTGGGCT CAAGTGATCC TCCCACCTCA GCCTCCTGAG CAGCTAGGAC 001360 001361 TACAGATACA TGCCACCGCT CCCGGCTAGT ATTTTTTAAA ATTTTTTGTA GAGCCAAGTG TTGCTATGTT GTCCACACTG 001440 001441 ATCTGGAGCT TCTAATCTCA AATGATTCTC CTGCCTCAGC CTCCCAAAGT GCTGGGAATA CAGGTGTGAG CCACCATACC 001520 001521 TGGCCTTACT GTACTAATAT TAATATTGTG TAAATAGGGG AAAATACCAT GGTTAATTTT TACTCAAACA GTAAGAAAGT 001600 001601 TTGAGTAACT AATTTTAATC TCAACAGCCC ATAGCTAGAA GAGGGGATCT AAATGTTAAG TTGAATATTT AGAAATAAAA 001680 001681 GTGTCTACAA GAAGAAAAGT CTTTAGTGAA AATATGGGCA TAGGCCAGCA GCATTAGCTT TCTATTGCTG CAGAACAAAT 001760 001761 TACCACAAAC TTAGCTGCTT AAAACAACAC ACACTTATTG TCTCACAATG TTTGTGGGTC GGAAGTCTAG GCGTGGCTTA 001840 001841 GCTGGGTAGT CTGTTTAGGA TCTCAGTGCT GGAAAAACGT GTCTGGCCAG GTGCTCATTG TAGCTTTGAC AGGGAAGGGA 001920 001921 TCTGCTCCCA AGCACTCTCA GGTTGTTGGC AGAATTTGTT TCCTTATGGC TGTAGGATTC ATGGCAAGTT GCTTCTTCCA 002000 002001 AAACCAGCAT TGGAGACAGA CTAGCAAGAT GGGCACTACA CTCTTAGATA ATCAAATAAA TGCAATCATG TGCCTCGTGT 002080 002081 CACCTTTTTT GCATTCCATT CATTAAGAAC AAGTTGCAGT TCCTACCTAC ACTCAAGGAA GGGAGGAATT ACACAGAAGT 002160 002161 GTGACCACAG GAGGCAGGGC TCATGGAGGC CTCCTTAAAG TCCCCCAGCC AAACCTGAAA AGTCAATCCT GGACCTTATC 002240 002241 ATAGTGGCTG TATAGTTTAG AAGGTTTCTT CAGATTGGCA TTCCTTTGCC TCATATCATC ACTTCAAAAC CCTATAAGGG 002320 002321 TTTGTTCCTC GGTCTTGACT TTGTGTCTTT GAGGATTGCT TTGTTTAGTG TCACCTGCCT TCTTTCAGGA GGTTTTGCCT 002400 002401 GACATCTGGT GGTGACCGTG GCCACCAAGT CAACCCAAAC ACTACCTTTA AGGACGACTG CAGTTCTCTT AGGGTCTCCT 002480 002481 CAATCTAAAA TTGTACCTCT TTCAGGCCAA ACACCTATTT TCTTCATTTT TTTTTTCTCA TAAGAATGCT AGCTAGTATG 002560 002561 CCTATTATCT AACTGGCACA GTTTCACCAA GGACAGTTTG GAACTACACA GGCCATTTTA GGGAGATTTT GACATGAACA 002640 002641 AGATTGCTTC TTTGGGAGGT ACCTTAAAAT GAAAAGCAAA GAAACTTCCA TGCGGAGATT GTCTTGTTTT TCTCAAAATG 002720 002721 GGATAATTTT GCTTAACATA AGTAGTATCC CTTCCTTCCT TTCCATACTT TGAGAATTAA TAAGGACTAG CTTTTTGATC 002800 002801 ACACAGCTTG ATAAAATTTT CAAGGGTCCA AATTACTGTC TAAACCATTT GCCACTCTTT GTGTATATTT GTCAAAATCT 002880 002881 GCTTTTCTAT ATCAAAACTT TTCTCTCAAG ACCTGAGGGA ATTAATTAAT AAGGAATCCT TGGAACACTG GAAATTCTAA 002960 002961 AATAAGAGTC AGATACAAAA CACTGGTCAC TAAAATTCTT ACCTTTATGT ATTAGAATGG CAATCAATGA ACAAACTGAA 003040 003041 AATGTCTTTG GATATTATTT CTGTTTATTT TTTGCCTCAA AATTATTAAA TGACATGAAA TAAGTGCTCA AGAAGAAAAA 003120 003121 TAAACAATTC TTCATTTCC |
Predicted Small Protein
Name | NONHSAT072743_smProtein_812:937 |
Length | 42 |
Molecular weight | 4598.6929 |
Aromaticity | 0.0731707317073 |
Instability index | 85.5390243902 |
Isoelectric point | 9.24627685547 |
Runs | 6 |
Runs residual | 0.0296274128385 |
Runs probability | 0.0264382029088 |
Amino acid sequence | MMMKNLCILVTLCFPSPLVKFGLATMTLSCLLSQYPSCRRS |
Secondary structure | LLHHHHHHHHEELLLLHHHHHHHHHHHHHHHHHLLLLLLLL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |