Difference between revisions of "NONHSAT072743"

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sequence = <dnaseq>CTCTTTCTAGGGACTTTCCTGAGTGGGAGGGATTTCGCCGGAACAAAAATGCCTCAGTTTGGAGGTCGCGCTCACTGCGACGGCAGGCTTTGAGTGTAGCACTTGGTAGTTCTTCCTCTGCTCTGCTTCCCTTCGGAGGAAAATTTCAGGCTGAAGGTTTAGCGGGTGCCGCCTCTAAAGAGAGCAATCACTACACTTATGGCTGGGATTTTGCGCTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGACTGTGACAAAAGGTGTGGAGTCTCTTATTTGTACAGATTGGATTCGTCACAAATTCACCAGATCAAGAATTCCAGAAAAAGTGTTTCAGGCCTCACCTGAAGATCATGAAAAATACGGTGGGGATCCACAGAACCCTCATAAACTGCATATTGTTACCAGAATAAAAAGTACAAGAAGACGTCCATATTGGGAAAAAGATATAATAAAGATGCTTGGATTAGAAAAAGCACATACCCCTCAAGTTCACAAGAATATCCCTTCAGTGAATGCAAAATTGAAAGTAGTTAAGCATTTGATAAGAATCAAGCCCTTGAAGTTGCCACAAGGACTTCCAGCAGAGGAGAACATGTCTAACACGTGCCTCAAAAGCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGCAGAAAGCACATGAGTCCTAATGCCCCAGCAGCTTCCGATTGGAAAATGCAAATTGTTTTTATTTAAAGATGATACCTGGAGGGGTGGGGAGAAGTAAGAATTGTAAGGGAGGTTCAGTAGTGGGGAATTCTGTGACAGCTGATTGAAGATGATGATGAAGAACCTCTGCATTCTAGTTACCCTTTGCTTCCCTTCACCTCTTGTAAAATTTGGCTTGGCAACAATGACATTGTCATGCTTATTGTCCCAATATCCATCCTGTCGTAGATCTTAATGTTTTTGATCGTTGCGTTAAAGTGGAAGTGCCACCCACAGTGAAACCAGATCCCATTAATAAATAAGCTTAAAGGCAACTGCAGTTTTAATTCCATAGTTATTGAATATCCAGTGTGTGTAAGGCCTGGAGGGGAGCCAAAGGACACTAACTTCTAAGAGCTCCGTCTAGTTGGAGAGAAACCTGTGTGCCACAACATACAGTGTCCTTGCTTATGTGGGGTCGAAGACATCTGTGAAAATAAAAGCAGCCTCTGCTAATTTAGCGCCATCTCTTTTACTGTGCTAATTTTTTTTTCTTTAGAGACAGGGTCTCACTCTGTCGCCCAGCCTGGAGGGCAGTGGTGTGATCGTAGCTCACTATTACCTCCAACTCTTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGCAGCTAGGACTACAGATACATGCCACCGCTCCCGGCTAGTATTTTTTAAAATTTTTTGTAGAGCCAAGTGTTGCTATGTTGTCCACACTGATCTGGAGCTTCTAATCTCAAATGATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGAATACAGGTGTGAGCCACCATACCTGGCCTTACTGTACTAATATTAATATTGTGTAAATAGGGGAAAATACCATGGTTAATTTTTACTCAAACAGTAAGAAAGTTTGAGTAACTAATTTTAATCTCAACAGCCCATAGCTAGAAGAGGGGATCTAAATGTTAAGTTGAATATTTAGAAATAAAAGTGTCTACAAGAAGAAAAGTCTTTAGTGAAAATATGGGCATAGGCCAGCAGCATTAGCTTTCTATTGCTGCAGAACAAATTACCACAAACTTAGCTGCTTAAAACAACACACACTTATTGTCTCACAATGTTTGTGGGTCGGAAGTCTAGGCGTGGCTTAGCTGGGTAGTCTGTTTAGGATCTCAGTGCTGGAAAAACGTGTCTGGCCAGGTGCTCATTGTAGCTTTGACAGGGAAGGGATCTGCTCCCAAGCACTCTCAGGTTGTTGGCAGAATTTGTTTCCTTATGGCTGTAGGATTCATGGCAAGTTGCTTCTTCCAAAACCAGCATTGGAGACAGACTAGCAAGATGGGCACTACACTCTTAGATAATCAAATAAATGCAATCATGTGCCTCGTGTCACCTTTTTTGCATTCCATTCATTAAGAACAAGTTGCAGTTCCTACCTACACTCAAGGAAGGGAGGAATTACACAGAAGTGTGACCACAGGAGGCAGGGCTCATGGAGGCCTCCTTAAAGTCCCCCAGCCAAACCTGAAAAGTCAATCCTGGACCTTATCATAGTGGCTGTATAGTTTAGAAGGTTTCTTCAGATTGGCATTCCTTTGCCTCATATCATCACTTCAAAACCCTATAAGGGTTTGTTCCTCGGTCTTGACTTTGTGTCTTTGAGGATTGCTTTGTTTAGTGTCACCTGCCTTCTTTCAGGAGGTTTTGCCTGACATCTGGTGGTGACCGTGGCCACCAAGTCAACCCAAACACTACCTTTAAGGACGACTGCAGTTCTCTTAGGGTCTCCTCAATCTAAAATTGTACCTCTTTCAGGCCAAACACCTATTTTCTTCATTTTTTTTTTCTCATAAGAATGCTAGCTAGTATGCCTATTATCTAACTGGCACAGTTTCACCAAGGACAGTTTGGAACTACACAGGCCATTTTAGGGAGATTTTGACATGAACAAGATTGCTTCTTTGGGAGGTACCTTAAAATGAAAAGCAAAGAAACTTCCATGCGGAGATTGTCTTGTTTTTCTCAAAATGGGATAATTTTGCTTAACATAAGTAGTATCCCTTCCTTCCTTTCCATACTTTGAGAATTAATAAGGACTAGCTTTTTGATCACACAGCTTGATAAAATTTTCAAGGGTCCAAATTACTGTCTAAACCATTTGCCACTCTTTGTGTATATTTGTCAAAATCTGCTTTTCTATATCAAAACTTTTCTCTCAAGACCTGAGGGAATTAATTAATAAGGAATCCTTGGAACACTGGAAATTCTAAAATAAGAGTCAGATACAAAACACTGGTCACTAAAATTCTTACCTTTATGTATTAGAATGGCAATCAATGAACAAACTGAAAATGTCTTTGGATATTATTTCTGTTTATTTTTTGCCTCAAAATTATTAAATGACATGAAATAAGTGCTCAAGAAGAAAAATAAACAATTCTTCATTTCC</dnaseq>|
 
sequence = <dnaseq>CTCTTTCTAGGGACTTTCCTGAGTGGGAGGGATTTCGCCGGAACAAAAATGCCTCAGTTTGGAGGTCGCGCTCACTGCGACGGCAGGCTTTGAGTGTAGCACTTGGTAGTTCTTCCTCTGCTCTGCTTCCCTTCGGAGGAAAATTTCAGGCTGAAGGTTTAGCGGGTGCCGCCTCTAAAGAGAGCAATCACTACACTTATGGCTGGGATTTTGCGCTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGACTGTGACAAAAGGTGTGGAGTCTCTTATTTGTACAGATTGGATTCGTCACAAATTCACCAGATCAAGAATTCCAGAAAAAGTGTTTCAGGCCTCACCTGAAGATCATGAAAAATACGGTGGGGATCCACAGAACCCTCATAAACTGCATATTGTTACCAGAATAAAAAGTACAAGAAGACGTCCATATTGGGAAAAAGATATAATAAAGATGCTTGGATTAGAAAAAGCACATACCCCTCAAGTTCACAAGAATATCCCTTCAGTGAATGCAAAATTGAAAGTAGTTAAGCATTTGATAAGAATCAAGCCCTTGAAGTTGCCACAAGGACTTCCAGCAGAGGAGAACATGTCTAACACGTGCCTCAAAAGCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGCAGAAAGCACATGAGTCCTAATGCCCCAGCAGCTTCCGATTGGAAAATGCAAATTGTTTTTATTTAAAGATGATACCTGGAGGGGTGGGGAGAAGTAAGAATTGTAAGGGAGGTTCAGTAGTGGGGAATTCTGTGACAGCTGATTGAAGATGATGATGAAGAACCTCTGCATTCTAGTTACCCTTTGCTTCCCTTCACCTCTTGTAAAATTTGGCTTGGCAACAATGACATTGTCATGCTTATTGTCCCAATATCCATCCTGTCGTAGATCTTAATGTTTTTGATCGTTGCGTTAAAGTGGAAGTGCCACCCACAGTGAAACCAGATCCCATTAATAAATAAGCTTAAAGGCAACTGCAGTTTTAATTCCATAGTTATTGAATATCCAGTGTGTGTAAGGCCTGGAGGGGAGCCAAAGGACACTAACTTCTAAGAGCTCCGTCTAGTTGGAGAGAAACCTGTGTGCCACAACATACAGTGTCCTTGCTTATGTGGGGTCGAAGACATCTGTGAAAATAAAAGCAGCCTCTGCTAATTTAGCGCCATCTCTTTTACTGTGCTAATTTTTTTTTCTTTAGAGACAGGGTCTCACTCTGTCGCCCAGCCTGGAGGGCAGTGGTGTGATCGTAGCTCACTATTACCTCCAACTCTTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGCAGCTAGGACTACAGATACATGCCACCGCTCCCGGCTAGTATTTTTTAAAATTTTTTGTAGAGCCAAGTGTTGCTATGTTGTCCACACTGATCTGGAGCTTCTAATCTCAAATGATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGAATACAGGTGTGAGCCACCATACCTGGCCTTACTGTACTAATATTAATATTGTGTAAATAGGGGAAAATACCATGGTTAATTTTTACTCAAACAGTAAGAAAGTTTGAGTAACTAATTTTAATCTCAACAGCCCATAGCTAGAAGAGGGGATCTAAATGTTAAGTTGAATATTTAGAAATAAAAGTGTCTACAAGAAGAAAAGTCTTTAGTGAAAATATGGGCATAGGCCAGCAGCATTAGCTTTCTATTGCTGCAGAACAAATTACCACAAACTTAGCTGCTTAAAACAACACACACTTATTGTCTCACAATGTTTGTGGGTCGGAAGTCTAGGCGTGGCTTAGCTGGGTAGTCTGTTTAGGATCTCAGTGCTGGAAAAACGTGTCTGGCCAGGTGCTCATTGTAGCTTTGACAGGGAAGGGATCTGCTCCCAAGCACTCTCAGGTTGTTGGCAGAATTTGTTTCCTTATGGCTGTAGGATTCATGGCAAGTTGCTTCTTCCAAAACCAGCATTGGAGACAGACTAGCAAGATGGGCACTACACTCTTAGATAATCAAATAAATGCAATCATGTGCCTCGTGTCACCTTTTTTGCATTCCATTCATTAAGAACAAGTTGCAGTTCCTACCTACACTCAAGGAAGGGAGGAATTACACAGAAGTGTGACCACAGGAGGCAGGGCTCATGGAGGCCTCCTTAAAGTCCCCCAGCCAAACCTGAAAAGTCAATCCTGGACCTTATCATAGTGGCTGTATAGTTTAGAAGGTTTCTTCAGATTGGCATTCCTTTGCCTCATATCATCACTTCAAAACCCTATAAGGGTTTGTTCCTCGGTCTTGACTTTGTGTCTTTGAGGATTGCTTTGTTTAGTGTCACCTGCCTTCTTTCAGGAGGTTTTGCCTGACATCTGGTGGTGACCGTGGCCACCAAGTCAACCCAAACACTACCTTTAAGGACGACTGCAGTTCTCTTAGGGTCTCCTCAATCTAAAATTGTACCTCTTTCAGGCCAAACACCTATTTTCTTCATTTTTTTTTTCTCATAAGAATGCTAGCTAGTATGCCTATTATCTAACTGGCACAGTTTCACCAAGGACAGTTTGGAACTACACAGGCCATTTTAGGGAGATTTTGACATGAACAAGATTGCTTCTTTGGGAGGTACCTTAAAATGAAAAGCAAAGAAACTTCCATGCGGAGATTGTCTTGTTTTTCTCAAAATGGGATAATTTTGCTTAACATAAGTAGTATCCCTTCCTTCCTTTCCATACTTTGAGAATTAATAAGGACTAGCTTTTTGATCACACAGCTTGATAAAATTTTCAAGGGTCCAAATTACTGTCTAAACCATTTGCCACTCTTTGTGTATATTTGTCAAAATCTGCTTTTCTATATCAAAACTTTTCTCTCAAGACCTGAGGGAATTAATTAATAAGGAATCCTTGGAACACTGGAAATTCTAAAATAAGAGTCAGATACAAAACACTGGTCACTAAAATTCTTACCTTTATGTATTAGAATGGCAATCAATGAACAAACTGAAAATGTCTTTGGATATTATTTCTGTTTATTTTTTGCCTCAAAATTATTAAATGACATGAAATAAGTGCTCAAGAAGAAAAATAAACAATTCTTCATTTCC</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG028691]][[Category:Transcripts]]
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[[Category:Sense]][[Category:NONHSAG028691]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 23:28, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT072743

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3139 nt

Genomic location

chr2+:99797542..99816020

Exon number

7

Exons

99797542..99797712,99802640..99802717,99804640..99804720,99811214..99811360,99811579..99811652,99812036..99812219,99813617..99816020

Genome context

Sequence
000001 CTCTTTCTAG GGACTTTCCT GAGTGGGAGG GATTTCGCCG GAACAAAAAT GCCTCAGTTT GGAGGTCGCG CTCACTGCGA 000080
000081 CGGCAGGCTT TGAGTGTAGC ACTTGGTAGT TCTTCCTCTG CTCTGCTTCC CTTCGGAGGA AAATTTCAGG CTGAAGGTTT 000160
000161 AGCGGGTGCC GCCTCTAAAG AGAGCAATCA CTACACTTAT GGCTGGGATT TTGCGCTTAG TAGTTCAATG GCCCCCAGGC 000240
000241 AGACTACAGA CTGTGACAAA AGGTGTGGAG TCTCTTATTT GTACAGATTG GATTCGTCAC AAATTCACCA GATCAAGAAT 000320
000321 TCCAGAAAAA GTGTTTCAGG CCTCACCTGA AGATCATGAA AAATACGGTG GGGATCCACA GAACCCTCAT AAACTGCATA 000400
000401 TTGTTACCAG AATAAAAAGT ACAAGAAGAC GTCCATATTG GGAAAAAGAT ATAATAAAGA TGCTTGGATT AGAAAAAGCA 000480
000481 CATACCCCTC AAGTTCACAA GAATATCCCT TCAGTGAATG CAAAATTGAA AGTAGTTAAG CATTTGATAA GAATCAAGCC 000560
000561 CTTGAAGTTG CCACAAGGAC TTCCAGCAGA GGAGAACATG TCTAACACGT GCCTCAAAAG CACTGGGGAG TTAGTAGTGC 000640
000641 AGTGGCATCT GAAACCTGTG GAGCAGAAAG CACATGAGTC CTAATGCCCC AGCAGCTTCC GATTGGAAAA TGCAAATTGT 000720
000721 TTTTATTTAA AGATGATACC TGGAGGGGTG GGGAGAAGTA AGAATTGTAA GGGAGGTTCA GTAGTGGGGA ATTCTGTGAC 000800
000801 AGCTGATTGA AGATGATGAT GAAGAACCTC TGCATTCTAG TTACCCTTTG CTTCCCTTCA CCTCTTGTAA AATTTGGCTT 000880
000881 GGCAACAATG ACATTGTCAT GCTTATTGTC CCAATATCCA TCCTGTCGTA GATCTTAATG TTTTTGATCG TTGCGTTAAA 000960
000961 GTGGAAGTGC CACCCACAGT GAAACCAGAT CCCATTAATA AATAAGCTTA AAGGCAACTG CAGTTTTAAT TCCATAGTTA 001040
001041 TTGAATATCC AGTGTGTGTA AGGCCTGGAG GGGAGCCAAA GGACACTAAC TTCTAAGAGC TCCGTCTAGT TGGAGAGAAA 001120
001121 CCTGTGTGCC ACAACATACA GTGTCCTTGC TTATGTGGGG TCGAAGACAT CTGTGAAAAT AAAAGCAGCC TCTGCTAATT 001200
001201 TAGCGCCATC TCTTTTACTG TGCTAATTTT TTTTTCTTTA GAGACAGGGT CTCACTCTGT CGCCCAGCCT GGAGGGCAGT 001280
001281 GGTGTGATCG TAGCTCACTA TTACCTCCAA CTCTTGGGCT CAAGTGATCC TCCCACCTCA GCCTCCTGAG CAGCTAGGAC 001360
001361 TACAGATACA TGCCACCGCT CCCGGCTAGT ATTTTTTAAA ATTTTTTGTA GAGCCAAGTG TTGCTATGTT GTCCACACTG 001440
001441 ATCTGGAGCT TCTAATCTCA AATGATTCTC CTGCCTCAGC CTCCCAAAGT GCTGGGAATA CAGGTGTGAG CCACCATACC 001520
001521 TGGCCTTACT GTACTAATAT TAATATTGTG TAAATAGGGG AAAATACCAT GGTTAATTTT TACTCAAACA GTAAGAAAGT 001600
001601 TTGAGTAACT AATTTTAATC TCAACAGCCC ATAGCTAGAA GAGGGGATCT AAATGTTAAG TTGAATATTT AGAAATAAAA 001680
001681 GTGTCTACAA GAAGAAAAGT CTTTAGTGAA AATATGGGCA TAGGCCAGCA GCATTAGCTT TCTATTGCTG CAGAACAAAT 001760
001761 TACCACAAAC TTAGCTGCTT AAAACAACAC ACACTTATTG TCTCACAATG TTTGTGGGTC GGAAGTCTAG GCGTGGCTTA 001840
001841 GCTGGGTAGT CTGTTTAGGA TCTCAGTGCT GGAAAAACGT GTCTGGCCAG GTGCTCATTG TAGCTTTGAC AGGGAAGGGA 001920
001921 TCTGCTCCCA AGCACTCTCA GGTTGTTGGC AGAATTTGTT TCCTTATGGC TGTAGGATTC ATGGCAAGTT GCTTCTTCCA 002000
002001 AAACCAGCAT TGGAGACAGA CTAGCAAGAT GGGCACTACA CTCTTAGATA ATCAAATAAA TGCAATCATG TGCCTCGTGT 002080
002081 CACCTTTTTT GCATTCCATT CATTAAGAAC AAGTTGCAGT TCCTACCTAC ACTCAAGGAA GGGAGGAATT ACACAGAAGT 002160
002161 GTGACCACAG GAGGCAGGGC TCATGGAGGC CTCCTTAAAG TCCCCCAGCC AAACCTGAAA AGTCAATCCT GGACCTTATC 002240
002241 ATAGTGGCTG TATAGTTTAG AAGGTTTCTT CAGATTGGCA TTCCTTTGCC TCATATCATC ACTTCAAAAC CCTATAAGGG 002320
002321 TTTGTTCCTC GGTCTTGACT TTGTGTCTTT GAGGATTGCT TTGTTTAGTG TCACCTGCCT TCTTTCAGGA GGTTTTGCCT 002400
002401 GACATCTGGT GGTGACCGTG GCCACCAAGT CAACCCAAAC ACTACCTTTA AGGACGACTG CAGTTCTCTT AGGGTCTCCT 002480
002481 CAATCTAAAA TTGTACCTCT TTCAGGCCAA ACACCTATTT TCTTCATTTT TTTTTTCTCA TAAGAATGCT AGCTAGTATG 002560
002561 CCTATTATCT AACTGGCACA GTTTCACCAA GGACAGTTTG GAACTACACA GGCCATTTTA GGGAGATTTT GACATGAACA 002640
002641 AGATTGCTTC TTTGGGAGGT ACCTTAAAAT GAAAAGCAAA GAAACTTCCA TGCGGAGATT GTCTTGTTTT TCTCAAAATG 002720
002721 GGATAATTTT GCTTAACATA AGTAGTATCC CTTCCTTCCT TTCCATACTT TGAGAATTAA TAAGGACTAG CTTTTTGATC 002800
002801 ACACAGCTTG ATAAAATTTT CAAGGGTCCA AATTACTGTC TAAACCATTT GCCACTCTTT GTGTATATTT GTCAAAATCT 002880
002881 GCTTTTCTAT ATCAAAACTT TTCTCTCAAG ACCTGAGGGA ATTAATTAAT AAGGAATCCT TGGAACACTG GAAATTCTAA 002960
002961 AATAAGAGTC AGATACAAAA CACTGGTCAC TAAAATTCTT ACCTTTATGT ATTAGAATGG CAATCAATGA ACAAACTGAA 003040
003041 AATGTCTTTG GATATTATTT CTGTTTATTT TTTGCCTCAA AATTATTAAA TGACATGAAA TAAGTGCTCA AGAAGAAAAA 003120
003121 TAAACAATTC TTCATTTCC
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Predicted Small Protein

Name NONHSAT072743_smProtein_812:937
Length 42
Molecular weight 4598.6929
Aromaticity 0.0731707317073
Instability index 85.5390243902
Isoelectric point 9.24627685547
Runs 6
Runs residual 0.0296274128385
Runs probability 0.0264382029088
Amino acid sequence MMMKNLCILVTLCFPSPLVKFGLATMTLSCLLSQYPSCRRS
Secondary structure LLHHHHHHHHEELLLLHHHHHHHHHHHHHHHHHLLLLLLLL
PRMN LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
PiMo oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii