Difference between revisions of "NONHSAT077430"
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sequence = <dnaseq>GTGACGTGCGTGGCGACGTGTCGGCCATCTTGTGTTGTTGAGGCTGAGGACTGACTGGGGTTCTGAGACTCCCTGTCCCGGACCGCAGATTATAGTGGGACCAGTCTCATTAGGTTGAATCTACAGCCTATGTTGGTGTTAACCCAGGTCTCTTAGAGCGTTAAAAGGATCTGAACAAAGTCTGCTCAAATCTCCTGCTGTGAACCAGCAGAATTTTTGAACAGagactgtctcgctctgtcacccaggctagagtgcagtggtgctatcgtaactcactggagccctgatctaggctcaaaccatcctcccacctcagcctcccaagtagctgggactaagATGCTGCTTGAATCTGGGGCTTCGTTTATATTTCAAGACTGCTGCCTGTAGGAGCTCCATCTGTATCATTTGTGTTAATAGTGACCCTGGAGTTTTGTACTTCCAGAACCTATGTTTCTTCACATATAAAAATCTATTGTAAAAATACGGAAAAGAATGGCAGCGGAAACGCAGACACTGAACTTTGGGCCTGAATGATGTGTTTGGACCCCGAATATGGAATTCTCATGGAATTTTGAGATCCATCACATTGTAGTGTGGCTTCCCCCCCTCCCCTCCTTCCTTTTTCCCCAAAGTTGGTGATTGAAGATCCTCTCTTCAGTGGCATCAATAATAATAATTACTTTTTCTATTCAAACCTCGGGCAACCCCTTTGGTAATATCAGAAGTAGTATCTAAAATAGATAAATTGGATTTGTGTCTTAAACTCTTGGTTGTTCAGGTGGGAGTGGTTCAATAAATGATGCAGACTTCCTGTAGTAACTCTATTTGAGGAGTCTTATTAACTTATCCTATTAGAAATATTTCTTTTTATTAATATATGTAATCTCGAAGTTTTCTTAACCTTTATAGCCAGCATTTGGAGACTGAGGAGAAATCACTATTTGAAGTTCTAAGAACCGATGGAACTCCTGTATTTTGAGAGTTTATTTAGAACATGTTAACCTAAGTAATGCTGTACTTGTTTTAGTTATTCCTTTATATTTTTAAAATGATTTTCTTAGTATCAAATTAATATGTTTCTAAAAAAATTAGAAATAACTAGTAAGCCAGAAataatttcaacatccatggtacacactgtaaataccttggtgtatctttccaggtggttttatgtatgcttatttgtgtatatatacacttattttttacaaaaatgggatcatactgtaccttcagttttgtagcctgcttaaagaaataaccaaatcagaaacatctttttttaatcaataaatattttctgttgtattaaatggttgcattgtatggatgtaccatcatttattcaactagtcttctagatgtgacatatagaagctgttcttgatttttcattataaaaatatttttaatgaa</dnaseq>| | sequence = <dnaseq>GTGACGTGCGTGGCGACGTGTCGGCCATCTTGTGTTGTTGAGGCTGAGGACTGACTGGGGTTCTGAGACTCCCTGTCCCGGACCGCAGATTATAGTGGGACCAGTCTCATTAGGTTGAATCTACAGCCTATGTTGGTGTTAACCCAGGTCTCTTAGAGCGTTAAAAGGATCTGAACAAAGTCTGCTCAAATCTCCTGCTGTGAACCAGCAGAATTTTTGAACAGagactgtctcgctctgtcacccaggctagagtgcagtggtgctatcgtaactcactggagccctgatctaggctcaaaccatcctcccacctcagcctcccaagtagctgggactaagATGCTGCTTGAATCTGGGGCTTCGTTTATATTTCAAGACTGCTGCCTGTAGGAGCTCCATCTGTATCATTTGTGTTAATAGTGACCCTGGAGTTTTGTACTTCCAGAACCTATGTTTCTTCACATATAAAAATCTATTGTAAAAATACGGAAAAGAATGGCAGCGGAAACGCAGACACTGAACTTTGGGCCTGAATGATGTGTTTGGACCCCGAATATGGAATTCTCATGGAATTTTGAGATCCATCACATTGTAGTGTGGCTTCCCCCCCTCCCCTCCTTCCTTTTTCCCCAAAGTTGGTGATTGAAGATCCTCTCTTCAGTGGCATCAATAATAATAATTACTTTTTCTATTCAAACCTCGGGCAACCCCTTTGGTAATATCAGAAGTAGTATCTAAAATAGATAAATTGGATTTGTGTCTTAAACTCTTGGTTGTTCAGGTGGGAGTGGTTCAATAAATGATGCAGACTTCCTGTAGTAACTCTATTTGAGGAGTCTTATTAACTTATCCTATTAGAAATATTTCTTTTTATTAATATATGTAATCTCGAAGTTTTCTTAACCTTTATAGCCAGCATTTGGAGACTGAGGAGAAATCACTATTTGAAGTTCTAAGAACCGATGGAACTCCTGTATTTTGAGAGTTTATTTAGAACATGTTAACCTAAGTAATGCTGTACTTGTTTTAGTTATTCCTTTATATTTTTAAAATGATTTTCTTAGTATCAAATTAATATGTTTCTAAAAAAATTAGAAATAACTAGTAAGCCAGAAataatttcaacatccatggtacacactgtaaataccttggtgtatctttccaggtggttttatgtatgcttatttgtgtatatatacacttattttttacaaaaatgggatcatactgtaccttcagttttgtagcctgcttaaagaaataaccaaatcagaaacatctttttttaatcaataaatattttctgttgtattaaatggttgcattgtatggatgtaccatcatttattcaactagtcttctagatgtgacatatagaagctgttcttgatttttcattataaaaatatttttaatgaa</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG030800]] | + | [[Category:Sense]][[Category:NONHSAG030800]][[Category:Transcripts]] |
Latest revision as of 23:48, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077430 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1425 nt |
Genomic location |
chr2+:233562015..233601358 |
Exon number |
7 |
Exons |
233562015..233562102,233565295..233565364,233568134..233568199,233589284..233589401,233595832..233595944,233599865..233599948,233600473..233601358 |
Genome context |
|
Sequence |
000001 GTGACGTGCG TGGCGACGTG TCGGCCATCT TGTGTTGTTG AGGCTGAGGA CTGACTGGGG TTCTGAGACT CCCTGTCCCG 000080
000081 GACCGCAGAT TATAGTGGGA CCAGTCTCAT TAGGTTGAAT CTACAGCCTA TGTTGGTGTT AACCCAGGTC TCTTAGAGCG 000160 000161 TTAAAAGGAT CTGAACAAAG TCTGCTCAAA TCTCCTGCTG TGAACCAGCA GAATTTTTGA ACAGagactg tctcgctctg 000240 000241 tcacccaggc tagagtgcag tggtgctatc gtaactcact ggagccctga tctaggctca aaccatcctc ccacctcagc 000320 000321 ctcccaagta gctgggacta agATGCTGCT TGAATCTGGG GCTTCGTTTA TATTTCAAGA CTGCTGCCTG TAGGAGCTCC 000400 000401 ATCTGTATCA TTTGTGTTAA TAGTGACCCT GGAGTTTTGT ACTTCCAGAA CCTATGTTTC TTCACATATA AAAATCTATT 000480 000481 GTAAAAATAC GGAAAAGAAT GGCAGCGGAA ACGCAGACAC TGAACTTTGG GCCTGAATGA TGTGTTTGGA CCCCGAATAT 000560 000561 GGAATTCTCA TGGAATTTTG AGATCCATCA CATTGTAGTG TGGCTTCCCC CCCTCCCCTC CTTCCTTTTT CCCCAAAGTT 000640 000641 GGTGATTGAA GATCCTCTCT TCAGTGGCAT CAATAATAAT AATTACTTTT TCTATTCAAA CCTCGGGCAA CCCCTTTGGT 000720 000721 AATATCAGAA GTAGTATCTA AAATAGATAA ATTGGATTTG TGTCTTAAAC TCTTGGTTGT TCAGGTGGGA GTGGTTCAAT 000800 000801 AAATGATGCA GACTTCCTGT AGTAACTCTA TTTGAGGAGT CTTATTAACT TATCCTATTA GAAATATTTC TTTTTATTAA 000880 000881 TATATGTAAT CTCGAAGTTT TCTTAACCTT TATAGCCAGC ATTTGGAGAC TGAGGAGAAA TCACTATTTG AAGTTCTAAG 000960 000961 AACCGATGGA ACTCCTGTAT TTTGAGAGTT TATTTAGAAC ATGTTAACCT AAGTAATGCT GTACTTGTTT TAGTTATTCC 001040 001041 TTTATATTTT TAAAATGATT TTCTTAGTAT CAAATTAATA TGTTTCTAAA AAAATTAGAA ATAACTAGTA AGCCAGAAat 001120 001121 aatttcaaca tccatggtac acactgtaaa taccttggtg tatctttcca ggtggtttta tgtatgctta tttgtgtata 001200 001201 tatacactta ttttttacaa aaatgggatc atactgtacc ttcagttttg tagcctgctt aaagaaataa ccaaatcaga 001280 001281 aacatctttt tttaatcaat aaatattttc tgttgtatta aatggttgca ttgtatggat gtaccatcat ttattcaact 001360 001361 agtcttctag atgtgacata tagaagctgt tcttgatttt tcattataaa aatattttta atgaa |
Predicted Small Protein
Name | NONHSAT077430_smProtein_1079:1252 |
Length | 58 |
Molecular weight | 6894.1228 |
Aromaticity | 0.19298245614 |
Instability index | 42.0633333333 |
Isoelectric point | 8.85345458984 |
Runs | 8 |
Runs residual | 0.0135964912281 |
Runs probability | 0.0461159689102 |
Amino acid sequence | MFLKKLEITSKPEIISTSMVHTVNTLVYLSRWFYVCLFVYIYTYFLQKWDHTVPSVL |
Secondary structure | LLLEEEEELLLLEEEEELEEEEEEEEEEEEEEEEEEEEEEEEEHHHHHHLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTooooooooooooo |