Difference between revisions of "NONHSAT078056"
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sequence = <dnaseq>CACAGGCTCCCATCTGTCTCCGGGCTCCTACCGGGAAGTCCCCTCCCACTTGCCTTGAGAGCCGCTAATCCCTCTGGAGTCCTCACATCTCACTCAGTCCCCATCCTCTTTTCATCCTCTTTTCCTCTTTGAGTCCCTACCCATCCCTGGTACGGGATCAGCCCTTGTACCTTGAGAAGGGAGTTTGGGTGGAGGACTCGGGGTTGGGAGAGAAGTGACCTCCACTTTGGAAGGAGCTAATGACAGCCTCCCTTGTTGTTTCCTCCCCTAGCCCCAGTTCTGCCCTGGGCAATGCGTGCCCACTGCCCATCTCCCTGGAGAGCCAGCCTGTGCCAGGCAGCTGCATCTGCCTCCCACCCTGTCATGAGCTGTCagccttgattttgtcccacatttgctgtgtgatcttgggaaagtcattgtgcccctccaaccgtcaTCAAGCACCCTTGCACAGACATGCCTTTGTGTCTtgagcatctattctgtttctccttgtgctaggggctggggacacacagaagaatgagCTCGGCAAGATAGGGCCACATCTTCCTTTTTAGTTTTTCtttttctttttttttaatttttatttttttgagacagcgtctcactctgttgtccaggctggagtgcggtggcatgatcacggctcactgcagcctcgatctcccaaggctcaggtgatcctcccacctcagtcgcctgaggagctgggactacaggcacgcactaccatgcctagctaattttttgtatttttaatagagacagggttttgccatgatgcccaggctggtcttgaactcctgagctcaagtgatccacctgcctcggcctcccaaagtgctgggattgtaagcgtgagccaccgcgtctggccAAGGCCACATATTtcttgttcgtgttgtatctgtgagcctcccatagtgcttggcactgagtaggcagcccagtaaatatttactgaaGACAGTCTAATaatagtagcaaacttattatgctcactatgtgcaaagtgtttaagcgttttgtatgttctatttacttactcatttaagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgATGGGAGGAACTCTTGCAGCTCAAAACTAAAGGCCCCAAATGgtgacaggagatggcattggagaggcaggcagaagtgagaccttgtggggcctcataagccaaggtaaggagtttgagcttcagcccaagggtagtggggagccatggaagggttatgaagaggggtgggatgtgatctgattttcattctgaaaagacctctggctgctgtcaagagaacagcatgttgagcacaagagtgacagcaagagatcagcaaagagatcagagatgacagtgtcttggcctggtgcagagaaatgaagACATTCAAGAGATGTTAGCCTGTAAAATGAACTACAGGaatagctacagattggaaacaacctgtggtggttttaaaatatagctacaaattctttagcactcctctgtagagaggtgggatccttgtaccctctctgaatcttgggtgagctgatgactgcttcaaccaatggagtacggtggaagtaacactctgacttctaaggtccagacataaaagtacaggcaacttctgctagaactctagctcttggagcctgaggcaccatgcctacctagggctccatgtctgcttagaggctgccatgctgtcaggatgccaagaccatcaggagaggacacatgaaggcaccacagtcccagctaagcttagctttgagtcatcccagttcaagcataaaagaagtgagtgaagaagaaccagatgaggccaggcacggtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggataccctgagttcaggagttcgagaccagcctggccacatggcaaaaccccgtctctactaaaaatacaaaaatagccgggcatggtggcgtgcacctgtaatcccagctactagggaggatgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagccgacatcatgccattgcactgtagaaggcgaaggggaaggggaagaacaagatgattccagtggccagccatttgaatcagcttcagccttcaaatcttcaaatcttcctagctgaagactcaaacattgcagagtagaaacaagctggcctcactgtgtcctgcctgaattcctgacacacagaacccacaagcatattcaagtggttattgtgttataccactaggtttggggggttttgttctgtgctaacagataactgggacaccacttaaatatccatcaatggaagacgagttatgtacattatatgtctttgtggaatactatgcatccattagaaagaagaaattagtctataattatttatattaatcacacttcaagtgaagaaggatgcagtgttctgaaaagtcttgatagtatgcctccatttgAAATTCTCAAAAAGATGGCACATATAGAGAACTTCTGGGAAAATAGACAAGAAAGAGGTAACAGTAGATGCCTTGGGGGAGGGTAACTGATGGCAAG</dnaseq>| | sequence = <dnaseq>CACAGGCTCCCATCTGTCTCCGGGCTCCTACCGGGAAGTCCCCTCCCACTTGCCTTGAGAGCCGCTAATCCCTCTGGAGTCCTCACATCTCACTCAGTCCCCATCCTCTTTTCATCCTCTTTTCCTCTTTGAGTCCCTACCCATCCCTGGTACGGGATCAGCCCTTGTACCTTGAGAAGGGAGTTTGGGTGGAGGACTCGGGGTTGGGAGAGAAGTGACCTCCACTTTGGAAGGAGCTAATGACAGCCTCCCTTGTTGTTTCCTCCCCTAGCCCCAGTTCTGCCCTGGGCAATGCGTGCCCACTGCCCATCTCCCTGGAGAGCCAGCCTGTGCCAGGCAGCTGCATCTGCCTCCCACCCTGTCATGAGCTGTCagccttgattttgtcccacatttgctgtgtgatcttgggaaagtcattgtgcccctccaaccgtcaTCAAGCACCCTTGCACAGACATGCCTTTGTGTCTtgagcatctattctgtttctccttgtgctaggggctggggacacacagaagaatgagCTCGGCAAGATAGGGCCACATCTTCCTTTTTAGTTTTTCtttttctttttttttaatttttatttttttgagacagcgtctcactctgttgtccaggctggagtgcggtggcatgatcacggctcactgcagcctcgatctcccaaggctcaggtgatcctcccacctcagtcgcctgaggagctgggactacaggcacgcactaccatgcctagctaattttttgtatttttaatagagacagggttttgccatgatgcccaggctggtcttgaactcctgagctcaagtgatccacctgcctcggcctcccaaagtgctgggattgtaagcgtgagccaccgcgtctggccAAGGCCACATATTtcttgttcgtgttgtatctgtgagcctcccatagtgcttggcactgagtaggcagcccagtaaatatttactgaaGACAGTCTAATaatagtagcaaacttattatgctcactatgtgcaaagtgtttaagcgttttgtatgttctatttacttactcatttaagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgATGGGAGGAACTCTTGCAGCTCAAAACTAAAGGCCCCAAATGgtgacaggagatggcattggagaggcaggcagaagtgagaccttgtggggcctcataagccaaggtaaggagtttgagcttcagcccaagggtagtggggagccatggaagggttatgaagaggggtgggatgtgatctgattttcattctgaaaagacctctggctgctgtcaagagaacagcatgttgagcacaagagtgacagcaagagatcagcaaagagatcagagatgacagtgtcttggcctggtgcagagaaatgaagACATTCAAGAGATGTTAGCCTGTAAAATGAACTACAGGaatagctacagattggaaacaacctgtggtggttttaaaatatagctacaaattctttagcactcctctgtagagaggtgggatccttgtaccctctctgaatcttgggtgagctgatgactgcttcaaccaatggagtacggtggaagtaacactctgacttctaaggtccagacataaaagtacaggcaacttctgctagaactctagctcttggagcctgaggcaccatgcctacctagggctccatgtctgcttagaggctgccatgctgtcaggatgccaagaccatcaggagaggacacatgaaggcaccacagtcccagctaagcttagctttgagtcatcccagttcaagcataaaagaagtgagtgaagaagaaccagatgaggccaggcacggtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggataccctgagttcaggagttcgagaccagcctggccacatggcaaaaccccgtctctactaaaaatacaaaaatagccgggcatggtggcgtgcacctgtaatcccagctactagggaggatgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagccgacatcatgccattgcactgtagaaggcgaaggggaaggggaagaacaagatgattccagtggccagccatttgaatcagcttcagccttcaaatcttcaaatcttcctagctgaagactcaaacattgcagagtagaaacaagctggcctcactgtgtcctgcctgaattcctgacacacagaacccacaagcatattcaagtggttattgtgttataccactaggtttggggggttttgttctgtgctaacagataactgggacaccacttaaatatccatcaatggaagacgagttatgtacattatatgtctttgtggaatactatgcatccattagaaagaagaaattagtctataattatttatattaatcacacttcaagtgaagaaggatgcagtgttctgaaaagtcttgatagtatgcctccatttgAAATTCTCAAAAAGATGGCACATATAGAGAACTTCTGGGAAAATAGACAAGAAAGAGGTAACAGTAGATGCCTTGGGGGAGGGTAACTGATGGCAAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG031079]][[Category:Transcripts]] | + | [[Category:Antisense]][[Category:NONHSAG031079]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:51, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078056 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2593 nt |
Genomic location |
chr20-:324777..327369 |
Exon number |
1 |
Exons |
324777..327369 |
Genome context |
|
Sequence |
000001 CACAGGCTCC CATCTGTCTC CGGGCTCCTA CCGGGAAGTC CCCTCCCACT TGCCTTGAGA GCCGCTAATC CCTCTGGAGT 000080
000081 CCTCACATCT CACTCAGTCC CCATCCTCTT TTCATCCTCT TTTCCTCTTT GAGTCCCTAC CCATCCCTGG TACGGGATCA 000160 000161 GCCCTTGTAC CTTGAGAAGG GAGTTTGGGT GGAGGACTCG GGGTTGGGAG AGAAGTGACC TCCACTTTGG AAGGAGCTAA 000240 000241 TGACAGCCTC CCTTGTTGTT TCCTCCCCTA GCCCCAGTTC TGCCCTGGGC AATGCGTGCC CACTGCCCAT CTCCCTGGAG 000320 000321 AGCCAGCCTG TGCCAGGCAG CTGCATCTGC CTCCCACCCT GTCATGAGCT GTCagccttg attttgtccc acatttgctg 000400 000401 tgtgatcttg ggaaagtcat tgtgcccctc caaccgtcaT CAAGCACCCT TGCACAGACA TGCCTTTGTG TCTtgagcat 000480 000481 ctattctgtt tctccttgtg ctaggggctg gggacacaca gaagaatgag CTCGGCAAGA TAGGGCCACA TCTTCCTTTT 000560 000561 TAGTTTTTCt ttttcttttt ttttaatttt tatttttttg agacagcgtc tcactctgtt gtccaggctg gagtgcggtg 000640 000641 gcatgatcac ggctcactgc agcctcgatc tcccaaggct caggtgatcc tcccacctca gtcgcctgag gagctgggac 000720 000721 tacaggcacg cactaccatg cctagctaat tttttgtatt tttaatagag acagggtttt gccatgatgc ccaggctggt 000800 000801 cttgaactcc tgagctcaag tgatccacct gcctcggcct cccaaagtgc tgggattgta agcgtgagcc accgcgtctg 000880 000881 gccAAGGCCA CATATTtctt gttcgtgttg tatctgtgag cctcccatag tgcttggcac tgagtaggca gcccagtaaa 000960 000961 tatttactga aGACAGTCTA ATaatagtag caaacttatt atgctcacta tgtgcaaagt gtttaagcgt tttgtatgtt 001040 001041 ctatttactt actcatttaa gtgtgtgtgt gtgtgtgtat gtgtgtgtgt gtgATGGGAG GAACTCTTGC AGCTCAAAAC 001120 001121 TAAAGGCCCC AAATGgtgac aggagatggc attggagagg caggcagaag tgagaccttg tggggcctca taagccaagg 001200 001201 taaggagttt gagcttcagc ccaagggtag tggggagcca tggaagggtt atgaagaggg gtgggatgtg atctgatttt 001280 001281 cattctgaaa agacctctgg ctgctgtcaa gagaacagca tgttgagcac aagagtgaca gcaagagatc agcaaagaga 001360 001361 tcagagatga cagtgtcttg gcctggtgca gagaaatgaa gACATTCAAG AGATGTTAGC CTGTAAAATG AACTACAGGa 001440 001441 atagctacag attggaaaca acctgtggtg gttttaaaat atagctacaa attctttagc actcctctgt agagaggtgg 001520 001521 gatccttgta ccctctctga atcttgggtg agctgatgac tgcttcaacc aatggagtac ggtggaagta acactctgac 001600 001601 ttctaaggtc cagacataaa agtacaggca acttctgcta gaactctagc tcttggagcc tgaggcacca tgcctaccta 001680 001681 gggctccatg tctgcttaga ggctgccatg ctgtcaggat gccaagacca tcaggagagg acacatgaag gcaccacagt 001760 001761 cccagctaag cttagctttg agtcatccca gttcaagcat aaaagaagtg agtgaagaag aaccagatga ggccaggcac 001840 001841 ggtggctcac acctgtaatc ccagcacttt gggaggccaa ggcgggtgga taccctgagt tcaggagttc gagaccagcc 001920 001921 tggccacatg gcaaaacccc gtctctacta aaaatacaaa aatagccggg catggtggcg tgcacctgta atcccagcta 002000 002001 ctagggagga tgaggcagga gaattgcttg aacccgggag gcagaggttg cagtgagccg acatcatgcc attgcactgt 002080 002081 agaaggcgaa ggggaagggg aagaacaaga tgattccagt ggccagccat ttgaatcagc ttcagccttc aaatcttcaa 002160 002161 atcttcctag ctgaagactc aaacattgca gagtagaaac aagctggcct cactgtgtcc tgcctgaatt cctgacacac 002240 002241 agaacccaca agcatattca agtggttatt gtgttatacc actaggtttg gggggttttg ttctgtgcta acagataact 002320 002321 gggacaccac ttaaatatcc atcaatggaa gacgagttat gtacattata tgtctttgtg gaatactatg catccattag 002400 002401 aaagaagaaa ttagtctata attatttata ttaatcacac ttcaagtgaa gaaggatgca gtgttctgaa aagtcttgat 002480 002481 agtatgcctc catttgAAAT TCTCAAAAAG ATGGCACATA TAGAGAACTT CTGGGAAAAT AGACAAGAAA GAGGTAACAG 002560 002561 TAGATGCCTT GGGGGAGGGT AACTGATGGC AAG |
Predicted Small Protein
Name | NONHSAT078056_smProtein_239:475 |
Length | 79 |
Molecular weight | 8082.4532 |
Aromaticity | 0.0128205128205 |
Instability index | 88.1384615385 |
Isoelectric point | 7.63812255859 |
Runs | 15 |
Runs residual | 0.0586303939962 |
Runs probability | 0.0625978920097 |
Amino acid sequence | MTASLVVSSPSPSSALGNACPLPISLESQPVPGSCICLPPCHELSALILSHICCVILGKS LCPSNRHQAPLHRHAFVS |
Secondary structure | LEEEEEELLLLLHHHLLLLLLLLLEEELLLLLLLEEELLLLLHHHHHHHHLEEEEEELLL LLLLLLLLLLHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii iiiiiiiiiiiiiiiiii |