Difference between revisions of "NONHSAT079125"
Line 42: | Line 42: | ||
sequence = <dnaseq>CAAGGCTGGAAATTAGGTAGTGTCAGTCCTCTGGCCTTGTTCTATTTCAGCCAATGCAACTGTGTTGGCTTTTATGAGTCTTTTACCTTCCCACACAAACTTTAGAATTACTTCGTTGATATCCACAAAGCAACTTGCTGGGATTTTGATTGGGATAGTTTTGAATCTATAGATTAAGTTAGGAAGAATTGACATCTTAACAATATTTAGTCTTCATATTCATGAACATGGATATCTCTCCATTTATTTAGATATTTGATTTCTTTCATCAAAGTTTTATAGTTTTCCTCATATAGATTCTGTACACATTTTCTGAGATTTATACCTAAACATTTCATTTAGGTATAAATATTTCATTTATTTGTGCTAATGTAAATGTGTTATATTTTTAATTTGAAATCCCATTTACTCATTGGTGCTATATAAGACAGCACTTAACTTTGCCTATTACTCTTGTATCCTGCCACCTTGCTACGATGGTGTATTAGCTTCAGGAGTTTATTTTCTTGATGCTTTGAAATTTTCTACATAGACAATCATTTCATCTGCAAAGAAAGTTTTATTTCTTCCCTCCCAATTTGTATGCCTTTTCTTTTCTTATTGCATTGACTAGGACGTCCAGTATGATATTGAATAGGAGTGGTGACAGGGGACATTCTTACCTTTTACCCAAAATTAAGGGGACAGCATCTAGTTCCTCACCACTAAGTATGATGTTAGCTGTAGGTTTTTAAAAAATTTATTTTTAATTTTTGTCGGTACATAGTAGATGTATACATTTATGGGTGACATGGTTTAGTTCTCTATCCCCATCCAAATCTCATGTTGAATTGTAAATTTACCTCCTACTTGAAATGAAAGACAAGAACCCTCAGGACCCGAAGATGTATGCTCAGCAGTATGGGAAGTATGTACTCAAAGTTCCTCTAAGTGTGTGAGAGGATGAAGAGCATAAACCACTGCAGAATCCTTTCCCCTTGAAGAGCTAAGTTTCTCCCAGGAGACCCCGTCAGGCAACAGGCATATGGTTCAGACTCCTCCATCTTATGGCCTGTTCCCCCGCTGCAGACCTTCACTAAGCACTGGCTCTGCACCAGGAGTGTGCGGGGCCCTGGCATGCAGGGGGTTGCAATTGTGGCGGATGCCTTGGAGGGAGCTGACTGGGAGTTGAGCACAGAGGGAGGAGCAAAGACCTCCTTCAAATAGGGTCATGGCCGGTGCCTGCCTCCTTGGAGTAAGTAGGTCCCCAGCAAGCAGAGGCAGGAACCCGCAGTCACGCCACCCTGGCAGAGTTGTTCTGACCTTTGCCTAGAGCCTCGGTGCTACCTGTGAGCTGGGATAGTGATCACATTCACTTCTAATATGAGCTGGTTAAAAGCACATTATCATTGGCCAGGTTTCTCAATTGCCAAGAGATGACCTAGTGCTTGTTTAATACCAGAAATGAAGCTCAGCAGCAGCTCTTGGGCTGTCCTTCAGCGGCCCCTCACATGCCCAGGTGTGACCTTCTGGTTAGGGTGGCCTATGTCACCTCCCTCTCACCTTCTTGATGTCCACACAGTGCACCTGCTTTTGTCTGCCATGGGGGAGAGGAGGAGAGGCAGATCCTTCTGTGCCCTCTGCTCATGACCTTTTCTGCAGTGGGGTCCGAGGGTGGGCTTAGCTCAGGGACTGGATGGTGTGTCCTCTCCTAAGCTTAACTTGGCTCTGGGTTCCTTTGTCTTACAGATGGAACTTAACCAGAAGAAGCTAAGGAAGAGAAGAGAGGAGAGGAGAGAGACAGTGAAGAGGCTGGAAAAGGAGGAAGAGAAGTATGTTCTTTGGAATCAAAGTGTTACCTGGATTCCTACCCAGGATTTTCCTATTGTCTCAGGACCTAAAGGGAAAAGACCGGCCATGGGGCATGTGAGCCTCTGGGAAATCTGCCTCAAGCCCATAATGCCATCCGTCTACAGCAGTTGGAACAGTGTAAGAGTCAGACCTCGCCAGATCCCAAGCGCTGCAACATGAAGAACAAAACCAAGGTTAAGCCACAGACCAGGCCCCGTGGAGATTTCGCTGCTTCTAGCCTGACCGTCAGGATTTGGGTCCTGACCGCTCCCCTGGCTGTTGGGCTGGTCCCAGCTCTGGGCCTCCGTTTTCTCACCCACAGAATGGGGACGATACAGGACCTCCCTCATCAGAGCTGTCACAAGTGGTAAGTGAATGGGTTCGTGAGAAGCTCTGCAGTGCCTGGCGCAGACCAAGGGCCCCACCGATGGTGGCTGTGAGTTTTCCCACTAATGTATTTTTTGATATGTAACATTTTAAAATAAAATTTTCTCTTTTCTTTTTTCCTTCTCCTTTTAGAACCTCAATTTCCTGATTCCCTAAGCTCATGTCTGGTGCTGACTATTATCTTAGTGCTGAACTCAAGCTTTCCTCATAGCTCCTCAGAGCATTTGAGAATAACTGGGTGTTTCTGCACCCACAACATATTTGTAAAACCAGTCAGGATATATGGTTCATGAAGCATTAATAGAAGATGTGGTTCTCAAACTTGAGTGGGGCTCAGGGTCCTCTGGGGGGCTTGTGAACACACAGATCATGGGTCTCCCCAAGGTCTCTGATGTTGGAGGTCTGGATGGGGTCCAAGAGTTTGTTTTTCTGGCCAATGCCCAGGTGGCCAGAACCACTTTTGGGAACCACACTTTGAGAACCACTGGCACATAGTAAGGAGGCCTCTTCCAGAGGCCACCAGGGAAGTCACTGTCCTGGAAGGTAAAGAACATTTGTCCAGGGGATGTGTTAATGAAAAGACTCAGTTCTGGGCTCCTGGAGCCAGGTAGGAGATGAGAACAGACACAAAAGAACTTAAGAATAAGAAAATAAGACCAAAGGAGCATCAAGTGCTTCAAGAGTGCAGCAGTGATTTTGTTCCAGCTGGGGCAGGAAAACCTGGGGAGGCTCTGCGGTGAGGAACCATTTGGGCTGGGCGTTGATGGGTGGCTGAGCACTGCTTGGCGCCTGGCCCTGCAAGTGCGATGTGGTGGGTCCTGTGTCCCACCTTGAATCTGTGTCCTGTCCTTGAATCTGGTGGCTTGTGGCTGCTTAAACCAGTCAGCAGGGCCAGTGCACACTAATGCCTTGGGTACAATGCCCAGGGCCTATGCTTCTAATGCCATTGAA</dnaseq>| | sequence = <dnaseq>CAAGGCTGGAAATTAGGTAGTGTCAGTCCTCTGGCCTTGTTCTATTTCAGCCAATGCAACTGTGTTGGCTTTTATGAGTCTTTTACCTTCCCACACAAACTTTAGAATTACTTCGTTGATATCCACAAAGCAACTTGCTGGGATTTTGATTGGGATAGTTTTGAATCTATAGATTAAGTTAGGAAGAATTGACATCTTAACAATATTTAGTCTTCATATTCATGAACATGGATATCTCTCCATTTATTTAGATATTTGATTTCTTTCATCAAAGTTTTATAGTTTTCCTCATATAGATTCTGTACACATTTTCTGAGATTTATACCTAAACATTTCATTTAGGTATAAATATTTCATTTATTTGTGCTAATGTAAATGTGTTATATTTTTAATTTGAAATCCCATTTACTCATTGGTGCTATATAAGACAGCACTTAACTTTGCCTATTACTCTTGTATCCTGCCACCTTGCTACGATGGTGTATTAGCTTCAGGAGTTTATTTTCTTGATGCTTTGAAATTTTCTACATAGACAATCATTTCATCTGCAAAGAAAGTTTTATTTCTTCCCTCCCAATTTGTATGCCTTTTCTTTTCTTATTGCATTGACTAGGACGTCCAGTATGATATTGAATAGGAGTGGTGACAGGGGACATTCTTACCTTTTACCCAAAATTAAGGGGACAGCATCTAGTTCCTCACCACTAAGTATGATGTTAGCTGTAGGTTTTTAAAAAATTTATTTTTAATTTTTGTCGGTACATAGTAGATGTATACATTTATGGGTGACATGGTTTAGTTCTCTATCCCCATCCAAATCTCATGTTGAATTGTAAATTTACCTCCTACTTGAAATGAAAGACAAGAACCCTCAGGACCCGAAGATGTATGCTCAGCAGTATGGGAAGTATGTACTCAAAGTTCCTCTAAGTGTGTGAGAGGATGAAGAGCATAAACCACTGCAGAATCCTTTCCCCTTGAAGAGCTAAGTTTCTCCCAGGAGACCCCGTCAGGCAACAGGCATATGGTTCAGACTCCTCCATCTTATGGCCTGTTCCCCCGCTGCAGACCTTCACTAAGCACTGGCTCTGCACCAGGAGTGTGCGGGGCCCTGGCATGCAGGGGGTTGCAATTGTGGCGGATGCCTTGGAGGGAGCTGACTGGGAGTTGAGCACAGAGGGAGGAGCAAAGACCTCCTTCAAATAGGGTCATGGCCGGTGCCTGCCTCCTTGGAGTAAGTAGGTCCCCAGCAAGCAGAGGCAGGAACCCGCAGTCACGCCACCCTGGCAGAGTTGTTCTGACCTTTGCCTAGAGCCTCGGTGCTACCTGTGAGCTGGGATAGTGATCACATTCACTTCTAATATGAGCTGGTTAAAAGCACATTATCATTGGCCAGGTTTCTCAATTGCCAAGAGATGACCTAGTGCTTGTTTAATACCAGAAATGAAGCTCAGCAGCAGCTCTTGGGCTGTCCTTCAGCGGCCCCTCACATGCCCAGGTGTGACCTTCTGGTTAGGGTGGCCTATGTCACCTCCCTCTCACCTTCTTGATGTCCACACAGTGCACCTGCTTTTGTCTGCCATGGGGGAGAGGAGGAGAGGCAGATCCTTCTGTGCCCTCTGCTCATGACCTTTTCTGCAGTGGGGTCCGAGGGTGGGCTTAGCTCAGGGACTGGATGGTGTGTCCTCTCCTAAGCTTAACTTGGCTCTGGGTTCCTTTGTCTTACAGATGGAACTTAACCAGAAGAAGCTAAGGAAGAGAAGAGAGGAGAGGAGAGAGACAGTGAAGAGGCTGGAAAAGGAGGAAGAGAAGTATGTTCTTTGGAATCAAAGTGTTACCTGGATTCCTACCCAGGATTTTCCTATTGTCTCAGGACCTAAAGGGAAAAGACCGGCCATGGGGCATGTGAGCCTCTGGGAAATCTGCCTCAAGCCCATAATGCCATCCGTCTACAGCAGTTGGAACAGTGTAAGAGTCAGACCTCGCCAGATCCCAAGCGCTGCAACATGAAGAACAAAACCAAGGTTAAGCCACAGACCAGGCCCCGTGGAGATTTCGCTGCTTCTAGCCTGACCGTCAGGATTTGGGTCCTGACCGCTCCCCTGGCTGTTGGGCTGGTCCCAGCTCTGGGCCTCCGTTTTCTCACCCACAGAATGGGGACGATACAGGACCTCCCTCATCAGAGCTGTCACAAGTGGTAAGTGAATGGGTTCGTGAGAAGCTCTGCAGTGCCTGGCGCAGACCAAGGGCCCCACCGATGGTGGCTGTGAGTTTTCCCACTAATGTATTTTTTGATATGTAACATTTTAAAATAAAATTTTCTCTTTTCTTTTTTCCTTCTCCTTTTAGAACCTCAATTTCCTGATTCCCTAAGCTCATGTCTGGTGCTGACTATTATCTTAGTGCTGAACTCAAGCTTTCCTCATAGCTCCTCAGAGCATTTGAGAATAACTGGGTGTTTCTGCACCCACAACATATTTGTAAAACCAGTCAGGATATATGGTTCATGAAGCATTAATAGAAGATGTGGTTCTCAAACTTGAGTGGGGCTCAGGGTCCTCTGGGGGGCTTGTGAACACACAGATCATGGGTCTCCCCAAGGTCTCTGATGTTGGAGGTCTGGATGGGGTCCAAGAGTTTGTTTTTCTGGCCAATGCCCAGGTGGCCAGAACCACTTTTGGGAACCACACTTTGAGAACCACTGGCACATAGTAAGGAGGCCTCTTCCAGAGGCCACCAGGGAAGTCACTGTCCTGGAAGGTAAAGAACATTTGTCCAGGGGATGTGTTAATGAAAAGACTCAGTTCTGGGCTCCTGGAGCCAGGTAGGAGATGAGAACAGACACAAAAGAACTTAAGAATAAGAAAATAAGACCAAAGGAGCATCAAGTGCTTCAAGAGTGCAGCAGTGATTTTGTTCCAGCTGGGGCAGGAAAACCTGGGGAGGCTCTGCGGTGAGGAACCATTTGGGCTGGGCGTTGATGGGTGGCTGAGCACTGCTTGGCGCCTGGCCCTGCAAGTGCGATGTGGTGGGTCCTGTGTCCCACCTTGAATCTGTGTCCTGTCCTTGAATCTGGTGGCTTGTGGCTGCTTAAACCAGTCAGCAGGGCCAGTGCACACTAATGCCTTGGGTACAATGCCCAGGGCCTATGCTTCTAATGCCATTGAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:55, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT079125 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3168 nt |
Genomic location |
chr20-:25069425..25077426 |
Exon number |
4 |
Exons |
25069425..25071467,25072004..25072149,25072915..25073059,25076593..25077426 |
Genome context |
|
Sequence |
000001 CAAGGCTGGA AATTAGGTAG TGTCAGTCCT CTGGCCTTGT TCTATTTCAG CCAATGCAAC TGTGTTGGCT TTTATGAGTC 000080
000081 TTTTACCTTC CCACACAAAC TTTAGAATTA CTTCGTTGAT ATCCACAAAG CAACTTGCTG GGATTTTGAT TGGGATAGTT 000160 000161 TTGAATCTAT AGATTAAGTT AGGAAGAATT GACATCTTAA CAATATTTAG TCTTCATATT CATGAACATG GATATCTCTC 000240 000241 CATTTATTTA GATATTTGAT TTCTTTCATC AAAGTTTTAT AGTTTTCCTC ATATAGATTC TGTACACATT TTCTGAGATT 000320 000321 TATACCTAAA CATTTCATTT AGGTATAAAT ATTTCATTTA TTTGTGCTAA TGTAAATGTG TTATATTTTT AATTTGAAAT 000400 000401 CCCATTTACT CATTGGTGCT ATATAAGACA GCACTTAACT TTGCCTATTA CTCTTGTATC CTGCCACCTT GCTACGATGG 000480 000481 TGTATTAGCT TCAGGAGTTT ATTTTCTTGA TGCTTTGAAA TTTTCTACAT AGACAATCAT TTCATCTGCA AAGAAAGTTT 000560 000561 TATTTCTTCC CTCCCAATTT GTATGCCTTT TCTTTTCTTA TTGCATTGAC TAGGACGTCC AGTATGATAT TGAATAGGAG 000640 000641 TGGTGACAGG GGACATTCTT ACCTTTTACC CAAAATTAAG GGGACAGCAT CTAGTTCCTC ACCACTAAGT ATGATGTTAG 000720 000721 CTGTAGGTTT TTAAAAAATT TATTTTTAAT TTTTGTCGGT ACATAGTAGA TGTATACATT TATGGGTGAC ATGGTTTAGT 000800 000801 TCTCTATCCC CATCCAAATC TCATGTTGAA TTGTAAATTT ACCTCCTACT TGAAATGAAA GACAAGAACC CTCAGGACCC 000880 000881 GAAGATGTAT GCTCAGCAGT ATGGGAAGTA TGTACTCAAA GTTCCTCTAA GTGTGTGAGA GGATGAAGAG CATAAACCAC 000960 000961 TGCAGAATCC TTTCCCCTTG AAGAGCTAAG TTTCTCCCAG GAGACCCCGT CAGGCAACAG GCATATGGTT CAGACTCCTC 001040 001041 CATCTTATGG CCTGTTCCCC CGCTGCAGAC CTTCACTAAG CACTGGCTCT GCACCAGGAG TGTGCGGGGC CCTGGCATGC 001120 001121 AGGGGGTTGC AATTGTGGCG GATGCCTTGG AGGGAGCTGA CTGGGAGTTG AGCACAGAGG GAGGAGCAAA GACCTCCTTC 001200 001201 AAATAGGGTC ATGGCCGGTG CCTGCCTCCT TGGAGTAAGT AGGTCCCCAG CAAGCAGAGG CAGGAACCCG CAGTCACGCC 001280 001281 ACCCTGGCAG AGTTGTTCTG ACCTTTGCCT AGAGCCTCGG TGCTACCTGT GAGCTGGGAT AGTGATCACA TTCACTTCTA 001360 001361 ATATGAGCTG GTTAAAAGCA CATTATCATT GGCCAGGTTT CTCAATTGCC AAGAGATGAC CTAGTGCTTG TTTAATACCA 001440 001441 GAAATGAAGC TCAGCAGCAG CTCTTGGGCT GTCCTTCAGC GGCCCCTCAC ATGCCCAGGT GTGACCTTCT GGTTAGGGTG 001520 001521 GCCTATGTCA CCTCCCTCTC ACCTTCTTGA TGTCCACACA GTGCACCTGC TTTTGTCTGC CATGGGGGAG AGGAGGAGAG 001600 001601 GCAGATCCTT CTGTGCCCTC TGCTCATGAC CTTTTCTGCA GTGGGGTCCG AGGGTGGGCT TAGCTCAGGG ACTGGATGGT 001680 001681 GTGTCCTCTC CTAAGCTTAA CTTGGCTCTG GGTTCCTTTG TCTTACAGAT GGAACTTAAC CAGAAGAAGC TAAGGAAGAG 001760 001761 AAGAGAGGAG AGGAGAGAGA CAGTGAAGAG GCTGGAAAAG GAGGAAGAGA AGTATGTTCT TTGGAATCAA AGTGTTACCT 001840 001841 GGATTCCTAC CCAGGATTTT CCTATTGTCT CAGGACCTAA AGGGAAAAGA CCGGCCATGG GGCATGTGAG CCTCTGGGAA 001920 001921 ATCTGCCTCA AGCCCATAAT GCCATCCGTC TACAGCAGTT GGAACAGTGT AAGAGTCAGA CCTCGCCAGA TCCCAAGCGC 002000 002001 TGCAACATGA AGAACAAAAC CAAGGTTAAG CCACAGACCA GGCCCCGTGG AGATTTCGCT GCTTCTAGCC TGACCGTCAG 002080 002081 GATTTGGGTC CTGACCGCTC CCCTGGCTGT TGGGCTGGTC CCAGCTCTGG GCCTCCGTTT TCTCACCCAC AGAATGGGGA 002160 002161 CGATACAGGA CCTCCCTCAT CAGAGCTGTC ACAAGTGGTA AGTGAATGGG TTCGTGAGAA GCTCTGCAGT GCCTGGCGCA 002240 002241 GACCAAGGGC CCCACCGATG GTGGCTGTGA GTTTTCCCAC TAATGTATTT TTTGATATGT AACATTTTAA AATAAAATTT 002320 002321 TCTCTTTTCT TTTTTCCTTC TCCTTTTAGA ACCTCAATTT CCTGATTCCC TAAGCTCATG TCTGGTGCTG ACTATTATCT 002400 002401 TAGTGCTGAA CTCAAGCTTT CCTCATAGCT CCTCAGAGCA TTTGAGAATA ACTGGGTGTT TCTGCACCCA CAACATATTT 002480 002481 GTAAAACCAG TCAGGATATA TGGTTCATGA AGCATTAATA GAAGATGTGG TTCTCAAACT TGAGTGGGGC TCAGGGTCCT 002560 002561 CTGGGGGGCT TGTGAACACA CAGATCATGG GTCTCCCCAA GGTCTCTGAT GTTGGAGGTC TGGATGGGGT CCAAGAGTTT 002640 002641 GTTTTTCTGG CCAATGCCCA GGTGGCCAGA ACCACTTTTG GGAACCACAC TTTGAGAACC ACTGGCACAT AGTAAGGAGG 002720 002721 CCTCTTCCAG AGGCCACCAG GGAAGTCACT GTCCTGGAAG GTAAAGAACA TTTGTCCAGG GGATGTGTTA ATGAAAAGAC 002800 002801 TCAGTTCTGG GCTCCTGGAG CCAGGTAGGA GATGAGAACA GACACAAAAG AACTTAAGAA TAAGAAAATA AGACCAAAGG 002880 002881 AGCATCAAGT GCTTCAAGAG TGCAGCAGTG ATTTTGTTCC AGCTGGGGCA GGAAAACCTG GGGAGGCTCT GCGGTGAGGA 002960 002961 ACCATTTGGG CTGGGCGTTG ATGGGTGGCT GAGCACTGCT TGGCGCCTGG CCCTGCAAGT GCGATGTGGT GGGTCCTGTG 003040 003041 TCCCACCTTG AATCTGTGTC CTGTCCTTGA ATCTGGTGGC TTGTGGCTGC TTAAACCAGT CAGCAGGGCC AGTGCACACT 003120 003121 AATGCCTTGG GTACAATGCC CAGGGCCTAT GCTTCTAATG CCATTGAA |
Predicted Small Protein
Name | NONHSAT079125_smProtein_2006:2200 |
Length | 65 |
Molecular weight | 7176.4475 |
Aromaticity | 0.0625 |
Instability index | 50.7640625 |
Isoelectric point | 11.481628418 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0615223066203 |
Amino acid sequence | MKNKTKVKPQTRPRGDFAASSLTVRIWVLTAPLAVGLVPALGLRFLTHRMGTIQDLPHQS CHKW |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLEEEEEEEEELLLLLLLHHHHLLHHHHHLLLLEELLLLLL LLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooooooooooo oooo |