Difference between revisions of "NONHSAT089476"

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sequence = <dnaseq>CAGCTGTTGGCTTGACCCCAGGCCGGGACGGGCAGAGCGGAACACTGCCCGGCGGGTCCAGGCCGACCGTGCCTGTGGCTCTCCGGAACAATAAACCCCCGGCCCCAGTGATGTGGGCCAGACCGGACCTGGAGAGGCGGCACCGCGACCCCTCCCGCAACCCGCCTGGCGGCCGGGGGCAGCGTGACCCGGCCCGCTACCGTGTCACAGCTGGCGACTGACAAACAGCAGGCGACGTCGGGAGAACTCCCCGAGACACCCGAGACATCAGCCTTCTCGCTCCGCGGCCCTGCAGGACCTGCCCGCCGGGAGCCCCGGAGTCCGCGGCAGCGCCGAGGGCCCCTCCCCCAGGCCTCTGGGCTCTGAGGCTCATCCATGGAATACCAATTCTTTTTCTTAGTGTTCACATTGGATTTTTCTGTTAAAAATAGATTGTTGGAGTTGGCTAACAAGTTGATTACTTCCAGTCAGGCACTCTCTTCTGTAAAGTCTCTTTTGTAAACTCCTACAAGCAGCTATTTCACTGGATTTGAAAAGACTGACTAAAAAGAACCATGCACTGTAACTCTCAAGTATACAGGAATATTGTTATTAGGTAATTTTTTTTTTCAATATGTGTTAACCTTGTCTTCCCTACAATTTTCTTTTTCTTTTTTTTTTTTTTTTGAGATGGAATCTCACTCTGTCGCCCAGGCTGGAGTGCGGTGGCACAATCTCAGCTCACTGCAACCTCTACTGCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACGCGCGCCACCATACCCA</dnaseq>|
 
sequence = <dnaseq>CAGCTGTTGGCTTGACCCCAGGCCGGGACGGGCAGAGCGGAACACTGCCCGGCGGGTCCAGGCCGACCGTGCCTGTGGCTCTCCGGAACAATAAACCCCCGGCCCCAGTGATGTGGGCCAGACCGGACCTGGAGAGGCGGCACCGCGACCCCTCCCGCAACCCGCCTGGCGGCCGGGGGCAGCGTGACCCGGCCCGCTACCGTGTCACAGCTGGCGACTGACAAACAGCAGGCGACGTCGGGAGAACTCCCCGAGACACCCGAGACATCAGCCTTCTCGCTCCGCGGCCCTGCAGGACCTGCCCGCCGGGAGCCCCGGAGTCCGCGGCAGCGCCGAGGGCCCCTCCCCCAGGCCTCTGGGCTCTGAGGCTCATCCATGGAATACCAATTCTTTTTCTTAGTGTTCACATTGGATTTTTCTGTTAAAAATAGATTGTTGGAGTTGGCTAACAAGTTGATTACTTCCAGTCAGGCACTCTCTTCTGTAAAGTCTCTTTTGTAAACTCCTACAAGCAGCTATTTCACTGGATTTGAAAAGACTGACTAAAAAGAACCATGCACTGTAACTCTCAAGTATACAGGAATATTGTTATTAGGTAATTTTTTTTTTCAATATGTGTTAACCTTGTCTTCCCTACAATTTTCTTTTTCTTTTTTTTTTTTTTTTGAGATGGAATCTCACTCTGTCGCCCAGGCTGGAGTGCGGTGGCACAATCTCAGCTCACTGCAACCTCTACTGCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACGCGCGCCACCATACCCA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG034973]]
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[[Category:Intergenic]][[Category:NONHSAG034973]][[Category:Transcripts]]

Latest revision as of 00:30, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089476

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

810 nt

Genomic location

chr3+:47205469..47212289

Exon number

2

Exons

47205469..47206087,47210659..47212289

Genome context

Sequence
000001 CAGCTGTTGG CTTGACCCCA GGCCGGGACG GGCAGAGCGG AACACTGCCC GGCGGGTCCA GGCCGACCGT GCCTGTGGCT 000080
000081 CTCCGGAACA ATAAACCCCC GGCCCCAGTG ATGTGGGCCA GACCGGACCT GGAGAGGCGG CACCGCGACC CCTCCCGCAA 000160
000161 CCCGCCTGGC GGCCGGGGGC AGCGTGACCC GGCCCGCTAC CGTGTCACAG CTGGCGACTG ACAAACAGCA GGCGACGTCG 000240
000241 GGAGAACTCC CCGAGACACC CGAGACATCA GCCTTCTCGC TCCGCGGCCC TGCAGGACCT GCCCGCCGGG AGCCCCGGAG 000320
000321 TCCGCGGCAG CGCCGAGGGC CCCTCCCCCA GGCCTCTGGG CTCTGAGGCT CATCCATGGA ATACCAATTC TTTTTCTTAG 000400
000401 TGTTCACATT GGATTTTTCT GTTAAAAATA GATTGTTGGA GTTGGCTAAC AAGTTGATTA CTTCCAGTCA GGCACTCTCT 000480
000481 TCTGTAAAGT CTCTTTTGTA AACTCCTACA AGCAGCTATT TCACTGGATT TGAAAAGACT GACTAAAAAG AACCATGCAC 000560
000561 TGTAACTCTC AAGTATACAG GAATATTGTT ATTAGGTAAT TTTTTTTTTC AATATGTGTT AACCTTGTCT TCCCTACAAT 000640
000641 TTTCTTTTTC TTTTTTTTTT TTTTTTGAGA TGGAATCTCA CTCTGTCGCC CAGGCTGGAG TGCGGTGGCA CAATCTCAGC 000720
000721 TCACTGCAAC CTCTACTGCC TGGGTTCAAG CGATTCTCCT GCCTCAGCCT CCTGAGTAGC TGGGATTACA GACGCGCGCC 000800
000801 ACCATACCCA
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Predicted Small Protein

Name NONHSAT089476_smProtein_110:220
Length 37
Molecular weight 4200.5851
Aromaticity 0.0555555555556
Instability index 46.0111111111
Isoelectric point 11.4651489258
Runs 5
Runs residual 0.0415695415695
Runs probability 0.0187422716834
Amino acid sequence MWARPDLERRHRDPSRNPPGGRGQRDPARYRVTAGD
Secondary structure LLLLLLHHHHLLLLLLLLLLLLLLLLLLLEEEELLL
PRMN -
PiMo -