Difference between revisions of "NONHSAT089476"
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sequence = <dnaseq>CAGCTGTTGGCTTGACCCCAGGCCGGGACGGGCAGAGCGGAACACTGCCCGGCGGGTCCAGGCCGACCGTGCCTGTGGCTCTCCGGAACAATAAACCCCCGGCCCCAGTGATGTGGGCCAGACCGGACCTGGAGAGGCGGCACCGCGACCCCTCCCGCAACCCGCCTGGCGGCCGGGGGCAGCGTGACCCGGCCCGCTACCGTGTCACAGCTGGCGACTGACAAACAGCAGGCGACGTCGGGAGAACTCCCCGAGACACCCGAGACATCAGCCTTCTCGCTCCGCGGCCCTGCAGGACCTGCCCGCCGGGAGCCCCGGAGTCCGCGGCAGCGCCGAGGGCCCCTCCCCCAGGCCTCTGGGCTCTGAGGCTCATCCATGGAATACCAATTCTTTTTCTTAGTGTTCACATTGGATTTTTCTGTTAAAAATAGATTGTTGGAGTTGGCTAACAAGTTGATTACTTCCAGTCAGGCACTCTCTTCTGTAAAGTCTCTTTTGTAAACTCCTACAAGCAGCTATTTCACTGGATTTGAAAAGACTGACTAAAAAGAACCATGCACTGTAACTCTCAAGTATACAGGAATATTGTTATTAGGTAATTTTTTTTTTCAATATGTGTTAACCTTGTCTTCCCTACAATTTTCTTTTTCTTTTTTTTTTTTTTTTGAGATGGAATCTCACTCTGTCGCCCAGGCTGGAGTGCGGTGGCACAATCTCAGCTCACTGCAACCTCTACTGCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACGCGCGCCACCATACCCA</dnaseq>| | sequence = <dnaseq>CAGCTGTTGGCTTGACCCCAGGCCGGGACGGGCAGAGCGGAACACTGCCCGGCGGGTCCAGGCCGACCGTGCCTGTGGCTCTCCGGAACAATAAACCCCCGGCCCCAGTGATGTGGGCCAGACCGGACCTGGAGAGGCGGCACCGCGACCCCTCCCGCAACCCGCCTGGCGGCCGGGGGCAGCGTGACCCGGCCCGCTACCGTGTCACAGCTGGCGACTGACAAACAGCAGGCGACGTCGGGAGAACTCCCCGAGACACCCGAGACATCAGCCTTCTCGCTCCGCGGCCCTGCAGGACCTGCCCGCCGGGAGCCCCGGAGTCCGCGGCAGCGCCGAGGGCCCCTCCCCCAGGCCTCTGGGCTCTGAGGCTCATCCATGGAATACCAATTCTTTTTCTTAGTGTTCACATTGGATTTTTCTGTTAAAAATAGATTGTTGGAGTTGGCTAACAAGTTGATTACTTCCAGTCAGGCACTCTCTTCTGTAAAGTCTCTTTTGTAAACTCCTACAAGCAGCTATTTCACTGGATTTGAAAAGACTGACTAAAAAGAACCATGCACTGTAACTCTCAAGTATACAGGAATATTGTTATTAGGTAATTTTTTTTTTCAATATGTGTTAACCTTGTCTTCCCTACAATTTTCTTTTTCTTTTTTTTTTTTTTTTGAGATGGAATCTCACTCTGTCGCCCAGGCTGGAGTGCGGTGGCACAATCTCAGCTCACTGCAACCTCTACTGCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACGCGCGCCACCATACCCA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG034973]] | + | [[Category:Intergenic]][[Category:NONHSAG034973]][[Category:Transcripts]] |
Latest revision as of 00:30, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089476 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
810 nt |
Genomic location |
chr3+:47205469..47212289 |
Exon number |
2 |
Exons |
47205469..47206087,47210659..47212289 |
Genome context |
|
Sequence |
000001 CAGCTGTTGG CTTGACCCCA GGCCGGGACG GGCAGAGCGG AACACTGCCC GGCGGGTCCA GGCCGACCGT GCCTGTGGCT 000080
000081 CTCCGGAACA ATAAACCCCC GGCCCCAGTG ATGTGGGCCA GACCGGACCT GGAGAGGCGG CACCGCGACC CCTCCCGCAA 000160 000161 CCCGCCTGGC GGCCGGGGGC AGCGTGACCC GGCCCGCTAC CGTGTCACAG CTGGCGACTG ACAAACAGCA GGCGACGTCG 000240 000241 GGAGAACTCC CCGAGACACC CGAGACATCA GCCTTCTCGC TCCGCGGCCC TGCAGGACCT GCCCGCCGGG AGCCCCGGAG 000320 000321 TCCGCGGCAG CGCCGAGGGC CCCTCCCCCA GGCCTCTGGG CTCTGAGGCT CATCCATGGA ATACCAATTC TTTTTCTTAG 000400 000401 TGTTCACATT GGATTTTTCT GTTAAAAATA GATTGTTGGA GTTGGCTAAC AAGTTGATTA CTTCCAGTCA GGCACTCTCT 000480 000481 TCTGTAAAGT CTCTTTTGTA AACTCCTACA AGCAGCTATT TCACTGGATT TGAAAAGACT GACTAAAAAG AACCATGCAC 000560 000561 TGTAACTCTC AAGTATACAG GAATATTGTT ATTAGGTAAT TTTTTTTTTC AATATGTGTT AACCTTGTCT TCCCTACAAT 000640 000641 TTTCTTTTTC TTTTTTTTTT TTTTTTGAGA TGGAATCTCA CTCTGTCGCC CAGGCTGGAG TGCGGTGGCA CAATCTCAGC 000720 000721 TCACTGCAAC CTCTACTGCC TGGGTTCAAG CGATTCTCCT GCCTCAGCCT CCTGAGTAGC TGGGATTACA GACGCGCGCC 000800 000801 ACCATACCCA |
Predicted Small Protein
Name | NONHSAT089476_smProtein_110:220 |
Length | 37 |
Molecular weight | 4200.5851 |
Aromaticity | 0.0555555555556 |
Instability index | 46.0111111111 |
Isoelectric point | 11.4651489258 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0187422716834 |
Amino acid sequence | MWARPDLERRHRDPSRNPPGGRGQRDPARYRVTAGD |
Secondary structure | LLLLLLHHHHLLLLLLLLLLLLLLLLLLLEEEELLL |
PRMN | - |
PiMo | - |