Difference between revisions of "NONHSAT096873"
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sequence = <dnaseq>CACAGAGCCCGGGCCGCAGGCACCTCCTCGCCAGCTCTTCCGCTCCTCTCACAGCCGCCAGACCCGCCTGCTGAGCCCCATGGCCCGCGCTGCTCTCTCCGCCGCCCCCAGCAATCCCCGGCTCCTGCGAGTGGCACTGCTGCTCCTGCTCCTGGTAGCCGCTGGCCGGCGCGCAGCAGTCAGTGAGTCTCTTCTTCCCTAGGAGCGTCCGTGGCCACTGAACTGCGCTGCCAGTGCTTGCAGACCCTGCAGGGAATTCACCCCAAGAACATCCAAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCAAACCGAAGTCATAGCCACACTCAAGAATGGGCGGAAAGCTTGCCTCAATCCTGCATCCCCCATAGTTAAGAAAATCATCGAAAAGATGCTGAACAGTGACAAATCCAACTGACCAGAAGGGAGGAGGAAGCTCACTGGTGGCTGTTCCTGAAGGAGGCCCTGCCCTTATAGGAACAGAAGAGGAAAGAGAGACACAGCTGCAGAGGCCACCTGGATTGTGCCTAATGTGTTTGAGCATCGCTTAGGAGAAGTCTTCTATTTATTTATTTATTCATTAGTTTTGAAGATTCTATGTTAATATTTTAGGTGTAAAATAATTAAGGGTATGATTAACTCTACCTGCACACTGTCCTATTATATTCATTCTTTTTGAAATGTCAACCCCAAGTTAGTTCAATCTGGATTCATATTTAATTTGAAGGTAGAATGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACATGCCAGCCACTGTGATAGAGGCTGGCGGATCCAAGCAAATGGCCAATGAGATCATTGTGAAGGCAGGGGAATGTATGTGCACATCTGTTTTGTAACTGTTTAGATGAATGTCAGTTGTTATTTATTGAAATGATTTCACAGTGTGTGGTCAACATTTCTCATGTTGAAACTTTAAGAACTAAAATGTTCTAAATATCCCTTGGACATTTTATGTCTTTCTTGTAAGGCATACTGCCTTGTTTAATGGTAGTTTTACAGTGTTTCTGGCTTAGAACAAAGGGGCTTAATTATTGATGTTTTCATAGAGAATATAAAAATAAAGCACTTATAGAAAAAACTCGTTTGATTTTTGGGGGGAAACAAGGGCTACCTTTACTGGAAAATCTGGTGATTTATA</dnaseq>| | sequence = <dnaseq>CACAGAGCCCGGGCCGCAGGCACCTCCTCGCCAGCTCTTCCGCTCCTCTCACAGCCGCCAGACCCGCCTGCTGAGCCCCATGGCCCGCGCTGCTCTCTCCGCCGCCCCCAGCAATCCCCGGCTCCTGCGAGTGGCACTGCTGCTCCTGCTCCTGGTAGCCGCTGGCCGGCGCGCAGCAGTCAGTGAGTCTCTTCTTCCCTAGGAGCGTCCGTGGCCACTGAACTGCGCTGCCAGTGCTTGCAGACCCTGCAGGGAATTCACCCCAAGAACATCCAAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCAAACCGAAGTCATAGCCACACTCAAGAATGGGCGGAAAGCTTGCCTCAATCCTGCATCCCCCATAGTTAAGAAAATCATCGAAAAGATGCTGAACAGTGACAAATCCAACTGACCAGAAGGGAGGAGGAAGCTCACTGGTGGCTGTTCCTGAAGGAGGCCCTGCCCTTATAGGAACAGAAGAGGAAAGAGAGACACAGCTGCAGAGGCCACCTGGATTGTGCCTAATGTGTTTGAGCATCGCTTAGGAGAAGTCTTCTATTTATTTATTTATTCATTAGTTTTGAAGATTCTATGTTAATATTTTAGGTGTAAAATAATTAAGGGTATGATTAACTCTACCTGCACACTGTCCTATTATATTCATTCTTTTTGAAATGTCAACCCCAAGTTAGTTCAATCTGGATTCATATTTAATTTGAAGGTAGAATGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACATGCCAGCCACTGTGATAGAGGCTGGCGGATCCAAGCAAATGGCCAATGAGATCATTGTGAAGGCAGGGGAATGTATGTGCACATCTGTTTTGTAACTGTTTAGATGAATGTCAGTTGTTATTTATTGAAATGATTTCACAGTGTGTGGTCAACATTTCTCATGTTGAAACTTTAAGAACTAAAATGTTCTAAATATCCCTTGGACATTTTATGTCTTTCTTGTAAGGCATACTGCCTTGTTTAATGGTAGTTTTACAGTGTTTCTGGCTTAGAACAAAGGGGCTTAATTATTGATGTTTTCATAGAGAATATAAAAATAAAGCACTTATAGAAAAAACTCGTTTGATTTTTGGGGGGAAACAAGGGCTACCTTTACTGGAAAATCTGGTGATTTATA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG038187]] | + | [[Category:Sense]][[Category:NONHSAG038187]][[Category:Transcripts]] |
Latest revision as of 01:00, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096873 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1192 nt |
Genomic location |
chr4+:74735109..74737019 |
Exon number |
4 |
Exons |
74735109..74735287,74735363..74735509,74735623..74735706,74736238..74737019 |
Genome context |
|
Sequence |
000001 CACAGAGCCC GGGCCGCAGG CACCTCCTCG CCAGCTCTTC CGCTCCTCTC ACAGCCGCCA GACCCGCCTG CTGAGCCCCA 000080
000081 TGGCCCGCGC TGCTCTCTCC GCCGCCCCCA GCAATCCCCG GCTCCTGCGA GTGGCACTGC TGCTCCTGCT CCTGGTAGCC 000160 000161 GCTGGCCGGC GCGCAGCAGT CAGTGAGTCT CTTCTTCCCT AGGAGCGTCC GTGGCCACTG AACTGCGCTG CCAGTGCTTG 000240 000241 CAGACCCTGC AGGGAATTCA CCCCAAGAAC ATCCAAAGTG TGAACGTGAA GTCCCCCGGA CCCCACTGCG CCCAAACCGA 000320 000321 AGTCATAGCC ACACTCAAGA ATGGGCGGAA AGCTTGCCTC AATCCTGCAT CCCCCATAGT TAAGAAAATC ATCGAAAAGA 000400 000401 TGCTGAACAG TGACAAATCC AACTGACCAG AAGGGAGGAG GAAGCTCACT GGTGGCTGTT CCTGAAGGAG GCCCTGCCCT 000480 000481 TATAGGAACA GAAGAGGAAA GAGAGACACA GCTGCAGAGG CCACCTGGAT TGTGCCTAAT GTGTTTGAGC ATCGCTTAGG 000560 000561 AGAAGTCTTC TATTTATTTA TTTATTCATT AGTTTTGAAG ATTCTATGTT AATATTTTAG GTGTAAAATA ATTAAGGGTA 000640 000641 TGATTAACTC TACCTGCACA CTGTCCTATT ATATTCATTC TTTTTGAAAT GTCAACCCCA AGTTAGTTCA ATCTGGATTC 000720 000721 ATATTTAATT TGAAGGTAGA ATGTTTTCAA ATGTTCTCCA GTCATTATGT TAATATTTCT GAGGAGCCTG CAACATGCCA 000800 000801 GCCACTGTGA TAGAGGCTGG CGGATCCAAG CAAATGGCCA ATGAGATCAT TGTGAAGGCA GGGGAATGTA TGTGCACATC 000880 000881 TGTTTTGTAA CTGTTTAGAT GAATGTCAGT TGTTATTTAT TGAAATGATT TCACAGTGTG TGGTCAACAT TTCTCATGTT 000960 000961 GAAACTTTAA GAACTAAAAT GTTCTAAATA TCCCTTGGAC ATTTTATGTC TTTCTTGTAA GGCATACTGC CTTGTTTAAT 001040 001041 GGTAGTTTTA CAGTGTTTCT GGCTTAGAAC AAAGGGGCTT AATTATTGAT GTTTTCATAG AGAATATAAA AATAAAGCAC 001120 001121 TTATAGAAAA AACTCGTTTG ATTTTTGGGG GGAAACAAGG GCTACCTTTA CTGGAAAATC TGGTGATTTA TA |
Predicted Small Protein
Name | NONHSAT096873_smProtein_794:889 |
Length | 32 |
Molecular weight | 3182.774 |
Aromaticity | 0.0 |
Instability index | 95.1451612903 |
Isoelectric point | 4.78338623047 |
Runs | 7 |
Runs residual | 0.0245295698925 |
Runs probability | 0.0301309713075 |
Amino acid sequence | MPATVIEAGGSKQMANEIIVKAGECMCTSVL |
Secondary structure | LLEEEEELLLLHHHHHHHHHHLLLEEELLLL |
PRMN | - |
PiMo | - |