Difference between revisions of "NONHSAT099222"

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sequence = <dnaseq>TTTCCCCTTTTATGAAATACAAATATTTGCACATCCACAAGATAAAGAGAAAGAACAAGAAAATAGAGGAATGAGACACTCTGTCTTTAGGCCCATAATAAATGTTCCGTTCGCCCCCATGCCGGAGCCCCAACCTCTACCTTACAGAGCTGCAGTGATCACATGTCCTGGCATGCCGTTCTCCCTCTCCAACAGTGTCTTCATATATTATCTAAACAGCTGGTTTCATGTGTATATTACCCTACACAGCCTCATCTTTTATGACGTTGGATATAAGTTATAAATAAAAGATCGTGAATTTAGCCTGTTTTGACTGAGCTCGTTGGACTTTAAATGGGAATCATTGAGACCTACAAATGTACATTTCCATTGTTTTGACGCCAAGGTATAATGCCTGGAGTTCATAAATAAAATTATATAAATGATTCTGTCTTGCATAAACTGCCAGGGAGACAATAGGCGATGTGTCCCTCGGCCCCCTTTGGTGAGCAGGCTGGAGGAATCACCAGGTTGGTGCATCCGAGCGAGGCAAAGAGGCAGACCCAGCCAACTACACTGCAAGCAGTTCCAACTGCACAGCCAGGGACAGGCTCCATGGAAAAGGCTGTTGTTCAACTGTTGGCCTTTTCAGCCCCATTGTGCGGACAGCAGTTTTTCTCTAGGGTACCAAAGTGTCCCTCTTCAATTTACAATAGTGTTTGTATTTCTTAGCTTCACAAACTGTGATATGAGCAAACTAAATTATGCTATTTAACTTGCTTTGTAGGGGAAGAAAGGGACTAGAGTCAAAGCAAATGGCCACACCGTAGTAGTAATAGGATTTAAACCCATTTCTGCAGACTCCCACTCTAGAGTTCCCTTTACTCTACTGAGCCTCCTATTTCAAGTTGAAGACATGATTAGTTTGTTGGATTTCATTAACTATAAATTGAACATGGGTGCTAGAGATATGATGATAGACAAGATAGAAGAATTCTCTGCTTTCCACAAAGTTTATAGGTCCATAGGGAAGGCAGACATTAAATTATATGATGAATGCTATGATAAGAGATATTTATGATTCAGCACTGGATGCTGGAGGCACCTAGTGATATCTAATCTACTCTAGTGGATCCAGAAAGGCTTCCTGGAACAAGAGCCATTCAAGAGGACACTGGCAGATGCACAGATATTACCCAAGCAAGGGGATAGAGTGGAAAGGAGAATGTGCAGAATGCCTGAGATGAGTTACAGTGATAGGAAGAAATCCGGATGGCTGGAGTGAGTATTCCAGGGTAGGCAGTAGCTAAACCCAGGGTTTTCGAGGCAATCCTAAAGACAGTGGGCAGGGGAGAAAAACAGACTATCAGGTGACTATGTGTGGAGAGCTACAGAGAGCACCAGGATTAGCTTAACACACCAGAATATACAGAGTTCAGTTTAGAGTCCCTTGCCTCATCCTATCTGATACTGTTAAGAATGCACATATATCTGTTTTCCTAAAAGTAGACTGGGGAAAGAGAAGCCAGTGCTCTCTTACTGGATGCTATTCTTCGATTTATTTAATGTATGTTTACTGAATATCTGGTATATTCAAGGGCATGTACCACATTGTGCTAAGCACTGTTGAACATTCAACGTACAAGTTAATATTTATTGAGTGCTTGCCTGTTACACACTTAGAGTTGTGGTGATTATAAATGAAGTTGTGGGCCTCGTTTACAGTAATCTCGCTGAAAGTAGGACACAACAAAATAAGCAACTAGGCCTGTCTACAAACAGGTATTATGCACACTGCTTAATGTTTTAATAAACAACCAAGTTGATCTCAGGGTTATATCCAACAATAAGAGAATTTTTGGTTTTTAATGTTATTTTTTAAAGACTTAGAACTAATTTCGGTTTTATAGTACAGGTACCAAATTAATTTTTGCTCAAAAATATAAGTGCATATTATGTGCTAGGCGTTGTACCAGTGATACAAATTGAGGACATTGTTCCTTGCCTCTGAGAAGCTTGCAAACAAGTGGGAACTATAACAATAAATATATTACGGTGGGATGTGCTATAAAAATGTTAGAAGATGTTAAAGTAATGTGGGCAACTTTGTAAACCTGTTTAATTTATTCCATTCCATCATACTGCAAAAATGAGAATAATGCATTTCCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTCCGCTCTTGTTGCCCAGGCTGGAGTGCTATGGTGCGATGTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTCGCTGGGATTACGGGCGCCCACCACCATGCCCAGCTAATTTTTGTTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCTAGCCTGGACTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCCCATTTCCTGCATTTTTATTGACACAATTTTAAATAAAATGCTTGAAATCCAACACATTTCTGTTTTCTTCTGAAATGTTCTAAATAGAACATTTATTTGTCTAATAAAGTTATAAAATTGC</dnaseq>|
 
sequence = <dnaseq>TTTCCCCTTTTATGAAATACAAATATTTGCACATCCACAAGATAAAGAGAAAGAACAAGAAAATAGAGGAATGAGACACTCTGTCTTTAGGCCCATAATAAATGTTCCGTTCGCCCCCATGCCGGAGCCCCAACCTCTACCTTACAGAGCTGCAGTGATCACATGTCCTGGCATGCCGTTCTCCCTCTCCAACAGTGTCTTCATATATTATCTAAACAGCTGGTTTCATGTGTATATTACCCTACACAGCCTCATCTTTTATGACGTTGGATATAAGTTATAAATAAAAGATCGTGAATTTAGCCTGTTTTGACTGAGCTCGTTGGACTTTAAATGGGAATCATTGAGACCTACAAATGTACATTTCCATTGTTTTGACGCCAAGGTATAATGCCTGGAGTTCATAAATAAAATTATATAAATGATTCTGTCTTGCATAAACTGCCAGGGAGACAATAGGCGATGTGTCCCTCGGCCCCCTTTGGTGAGCAGGCTGGAGGAATCACCAGGTTGGTGCATCCGAGCGAGGCAAAGAGGCAGACCCAGCCAACTACACTGCAAGCAGTTCCAACTGCACAGCCAGGGACAGGCTCCATGGAAAAGGCTGTTGTTCAACTGTTGGCCTTTTCAGCCCCATTGTGCGGACAGCAGTTTTTCTCTAGGGTACCAAAGTGTCCCTCTTCAATTTACAATAGTGTTTGTATTTCTTAGCTTCACAAACTGTGATATGAGCAAACTAAATTATGCTATTTAACTTGCTTTGTAGGGGAAGAAAGGGACTAGAGTCAAAGCAAATGGCCACACCGTAGTAGTAATAGGATTTAAACCCATTTCTGCAGACTCCCACTCTAGAGTTCCCTTTACTCTACTGAGCCTCCTATTTCAAGTTGAAGACATGATTAGTTTGTTGGATTTCATTAACTATAAATTGAACATGGGTGCTAGAGATATGATGATAGACAAGATAGAAGAATTCTCTGCTTTCCACAAAGTTTATAGGTCCATAGGGAAGGCAGACATTAAATTATATGATGAATGCTATGATAAGAGATATTTATGATTCAGCACTGGATGCTGGAGGCACCTAGTGATATCTAATCTACTCTAGTGGATCCAGAAAGGCTTCCTGGAACAAGAGCCATTCAAGAGGACACTGGCAGATGCACAGATATTACCCAAGCAAGGGGATAGAGTGGAAAGGAGAATGTGCAGAATGCCTGAGATGAGTTACAGTGATAGGAAGAAATCCGGATGGCTGGAGTGAGTATTCCAGGGTAGGCAGTAGCTAAACCCAGGGTTTTCGAGGCAATCCTAAAGACAGTGGGCAGGGGAGAAAAACAGACTATCAGGTGACTATGTGTGGAGAGCTACAGAGAGCACCAGGATTAGCTTAACACACCAGAATATACAGAGTTCAGTTTAGAGTCCCTTGCCTCATCCTATCTGATACTGTTAAGAATGCACATATATCTGTTTTCCTAAAAGTAGACTGGGGAAAGAGAAGCCAGTGCTCTCTTACTGGATGCTATTCTTCGATTTATTTAATGTATGTTTACTGAATATCTGGTATATTCAAGGGCATGTACCACATTGTGCTAAGCACTGTTGAACATTCAACGTACAAGTTAATATTTATTGAGTGCTTGCCTGTTACACACTTAGAGTTGTGGTGATTATAAATGAAGTTGTGGGCCTCGTTTACAGTAATCTCGCTGAAAGTAGGACACAACAAAATAAGCAACTAGGCCTGTCTACAAACAGGTATTATGCACACTGCTTAATGTTTTAATAAACAACCAAGTTGATCTCAGGGTTATATCCAACAATAAGAGAATTTTTGGTTTTTAATGTTATTTTTTAAAGACTTAGAACTAATTTCGGTTTTATAGTACAGGTACCAAATTAATTTTTGCTCAAAAATATAAGTGCATATTATGTGCTAGGCGTTGTACCAGTGATACAAATTGAGGACATTGTTCCTTGCCTCTGAGAAGCTTGCAAACAAGTGGGAACTATAACAATAAATATATTACGGTGGGATGTGCTATAAAAATGTTAGAAGATGTTAAAGTAATGTGGGCAACTTTGTAAACCTGTTTAATTTATTCCATTCCATCATACTGCAAAAATGAGAATAATGCATTTCCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTCCGCTCTTGTTGCCCAGGCTGGAGTGCTATGGTGCGATGTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTCGCTGGGATTACGGGCGCCCACCACCATGCCCAGCTAATTTTTGTTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCTAGCCTGGACTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCCCATTTCCTGCATTTTTATTGACACAATTTTAAATAAAATGCTTGAAATCCAACACATTTCTGTTTTCTTCTGAAATGTTCTAAATAGAACATTTATTTGTCTAATAAAGTTATAAAATTGC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG039339]]
+
[[Category:Intergenic]][[Category:NONHSAG039339]][[Category:Transcripts]]

Latest revision as of 01:10, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT099222

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2582 nt

Genomic location

chr4-:174071353..174074003

Exon number

2

Exons

174071353..174071358,174071424..174074003

Genome context

Sequence
000001 TTTCCCCTTT TATGAAATAC AAATATTTGC ACATCCACAA GATAAAGAGA AAGAACAAGA AAATAGAGGA ATGAGACACT 000080
000081 CTGTCTTTAG GCCCATAATA AATGTTCCGT TCGCCCCCAT GCCGGAGCCC CAACCTCTAC CTTACAGAGC TGCAGTGATC 000160
000161 ACATGTCCTG GCATGCCGTT CTCCCTCTCC AACAGTGTCT TCATATATTA TCTAAACAGC TGGTTTCATG TGTATATTAC 000240
000241 CCTACACAGC CTCATCTTTT ATGACGTTGG ATATAAGTTA TAAATAAAAG ATCGTGAATT TAGCCTGTTT TGACTGAGCT 000320
000321 CGTTGGACTT TAAATGGGAA TCATTGAGAC CTACAAATGT ACATTTCCAT TGTTTTGACG CCAAGGTATA ATGCCTGGAG 000400
000401 TTCATAAATA AAATTATATA AATGATTCTG TCTTGCATAA ACTGCCAGGG AGACAATAGG CGATGTGTCC CTCGGCCCCC 000480
000481 TTTGGTGAGC AGGCTGGAGG AATCACCAGG TTGGTGCATC CGAGCGAGGC AAAGAGGCAG ACCCAGCCAA CTACACTGCA 000560
000561 AGCAGTTCCA ACTGCACAGC CAGGGACAGG CTCCATGGAA AAGGCTGTTG TTCAACTGTT GGCCTTTTCA GCCCCATTGT 000640
000641 GCGGACAGCA GTTTTTCTCT AGGGTACCAA AGTGTCCCTC TTCAATTTAC AATAGTGTTT GTATTTCTTA GCTTCACAAA 000720
000721 CTGTGATATG AGCAAACTAA ATTATGCTAT TTAACTTGCT TTGTAGGGGA AGAAAGGGAC TAGAGTCAAA GCAAATGGCC 000800
000801 ACACCGTAGT AGTAATAGGA TTTAAACCCA TTTCTGCAGA CTCCCACTCT AGAGTTCCCT TTACTCTACT GAGCCTCCTA 000880
000881 TTTCAAGTTG AAGACATGAT TAGTTTGTTG GATTTCATTA ACTATAAATT GAACATGGGT GCTAGAGATA TGATGATAGA 000960
000961 CAAGATAGAA GAATTCTCTG CTTTCCACAA AGTTTATAGG TCCATAGGGA AGGCAGACAT TAAATTATAT GATGAATGCT 001040
001041 ATGATAAGAG ATATTTATGA TTCAGCACTG GATGCTGGAG GCACCTAGTG ATATCTAATC TACTCTAGTG GATCCAGAAA 001120
001121 GGCTTCCTGG AACAAGAGCC ATTCAAGAGG ACACTGGCAG ATGCACAGAT ATTACCCAAG CAAGGGGATA GAGTGGAAAG 001200
001201 GAGAATGTGC AGAATGCCTG AGATGAGTTA CAGTGATAGG AAGAAATCCG GATGGCTGGA GTGAGTATTC CAGGGTAGGC 001280
001281 AGTAGCTAAA CCCAGGGTTT TCGAGGCAAT CCTAAAGACA GTGGGCAGGG GAGAAAAACA GACTATCAGG TGACTATGTG 001360
001361 TGGAGAGCTA CAGAGAGCAC CAGGATTAGC TTAACACACC AGAATATACA GAGTTCAGTT TAGAGTCCCT TGCCTCATCC 001440
001441 TATCTGATAC TGTTAAGAAT GCACATATAT CTGTTTTCCT AAAAGTAGAC TGGGGAAAGA GAAGCCAGTG CTCTCTTACT 001520
001521 GGATGCTATT CTTCGATTTA TTTAATGTAT GTTTACTGAA TATCTGGTAT ATTCAAGGGC ATGTACCACA TTGTGCTAAG 001600
001601 CACTGTTGAA CATTCAACGT ACAAGTTAAT ATTTATTGAG TGCTTGCCTG TTACACACTT AGAGTTGTGG TGATTATAAA 001680
001681 TGAAGTTGTG GGCCTCGTTT ACAGTAATCT CGCTGAAAGT AGGACACAAC AAAATAAGCA ACTAGGCCTG TCTACAAACA 001760
001761 GGTATTATGC ACACTGCTTA ATGTTTTAAT AAACAACCAA GTTGATCTCA GGGTTATATC CAACAATAAG AGAATTTTTG 001840
001841 GTTTTTAATG TTATTTTTTA AAGACTTAGA ACTAATTTCG GTTTTATAGT ACAGGTACCA AATTAATTTT TGCTCAAAAA 001920
001921 TATAAGTGCA TATTATGTGC TAGGCGTTGT ACCAGTGATA CAAATTGAGG ACATTGTTCC TTGCCTCTGA GAAGCTTGCA 002000
002001 AACAAGTGGG AACTATAACA ATAAATATAT TACGGTGGGA TGTGCTATAA AAATGTTAGA AGATGTTAAA GTAATGTGGG 002080
002081 CAACTTTGTA AACCTGTTTA ATTTATTCCA TTCCATCATA CTGCAAAAAT GAGAATAATG CATTTCCTGC TTTTTTTTTT 002160
002161 TTTTTTTTTT TTTTTTTGAG ACAGAGTTCC GCTCTTGTTG CCCAGGCTGG AGTGCTATGG TGCGATGTTG GCTCACTGCA 002240
002241 ACCTCTGCCT CCTGGGTTCA AGCGATTCTC CTGCCTCAGC CTCCTGAGTC GCTGGGATTA CGGGCGCCCA CCACCATGCC 002320
002321 CAGCTAATTT TTGTTATTTT TAGTAGAGAC GGGGTTTCGC CATGTTGGCT AGCCTGGACT CGAACTCCTG ACCTCAGGTG 002400
002401 ATCCACCTGC CTTGGCCTCC CAAAGTGCTG GGATTACAGG TGTGAGCCAC TGCACCCAGC CCATTTCCTG CATTTTTATT 002480
002481 GACACAATTT TAAATAAAAT GCTTGAAATC CAACACATTT CTGTTTTCTT CTGAAATGTT CTAAATAGAA CATTTATTTG 002560
002561 TCTAATAAAG TTATAAAATT GC
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Predicted Small Protein

Name NONHSAT099222_smProtein_2216:2326
Length 37
Molecular weight 3910.5851
Aromaticity 0.0555555555556
Instability index 82.5527777778
Isoelectric point 8.00030517578
Runs 5
Runs residual 0.0415695415695
Runs probability 0.024960254372
Amino acid sequence MVRCWLTATSASWVQAILLPQPPESLGLRAPTTMPS
Secondary structure LEEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -