Difference between revisions of "NONHSAT099329"

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sequence = <dnaseq>ACTAATGGATTCTACTTCACATTATATAGGACATGGGACTTCGGAGCTTAATGGGATATCGATCTTCATCATGCTTAATACTTACTTTTCAAGAGAAAGCAATTGTAGACCAGTGTGGTTAAGTGACGGTTACAAGCCTTCATATCCAGTAAGCAGAAGATGAAATATAATTTGATGTTTGCCCTTGTTTGAATACTCCATGAAGATGAGGAAAATACATGTTTGTGTCTAACAGTGTCTGGCATGTGTGATTTCTATTGAGATGGACTCAATCTCAGAGATTCTATTCTCAGCTGTGTCCAGTCTACTGAGAGGCCCATCAAAGATTACTCAAGGAGCCGTCTCATGTAGAAAGACGCCCTCATAGGCTCTCACAAACTGTTGCAAGCATCTCAAATTTTATTGACTGCTGGGTCTTACAATTCCTCACCAGATGGCTTTGAACACAGTTCGATCATCAATCTCATTGATGCTACTGATAATTCTATTGGAACAGCAGGAGATGGCTCTAGCTCCTAAACCTGCCACTCGAAACACCTGTCATCACCTCGAAAGATCTTTCCAATACCCACTGGTACAGTTGTAACTCAATCACTTCGCAAGACAGATAATTGCATGTGGCCAAAGATGTACCTGGTCAACAGGACAGGTTAGACTATCTGCTCTCAGGTAGTCCCTCCAAATCAATGGCTGGACTCGGTTGTTCAAAATGAATAGGAAATCCTAAGGCTTATCAGCAAATTGGAAAGTCATGTTCGAGGTCCTATCAAGCTAGGCTCCTAAAAGATATAGTCCCCACCTGGAGGAGGGCATCAAAGAATTTTAAACAGCTCTTTCATTTTAGGGCCACTATTTGTGCCCTAAGACTATGCTTCTTGTACAGAAGCTAGCTATTAATTTGCCTCCCACTCAAACATGTTTGCTTAAAAACTTTAATTGTGGTTATTAGGGAAGTTCAGAGTGATTTGGGTCACATTACCAGAGATCATGTATCCAAAACACAACTGTAGAGATCTCTCCCAAATGTATCTACCCTTGTTTACTCATGGGAACTTCCTGGGAATGTAACTGACTCATTACATTGTCACAACTGTGGGCAGTTTCCCTAAAATGGGAATCATCCAGTTAGAAAGGGTAGTAAAAAATATGTGTCCAACTTTATCTAAAGTCATCAGTGATGCCATCTGACCCTTGAAAGGTATTCAGGTCGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCAGTTTGGGAGGCTGAGGTGGGCAGACCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCGATATGATGAATTTTTAGTCTCTACTAAAAATACAAAAGTTAGCCAGGCATGGTGGCATGCGCCTGTAATCCCAGCTACTCAGGAGCTGAGACAGGAGAATCACTTGAACACAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGTACCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTAAAAAAAAAAAAAAGAAAAGAAAGAAAGAAAAAAGAAAGGTATTCAGATCAGCCTCAACTCACTGAAACATTCTGCTGACTCCTGCTCTATAACTTGTTGGATCTGCCAGATCATATCACCGAAGTGGTAAGGCTGTTTCTACAACAGCGTACAACTGCTGCTAAGCTGACTTCGGCTCTAGACCCACTCAAAATTGGCAGTGTTCTAAGTCACCTGATAAATGAATCAAAGCAGAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>ACTAATGGATTCTACTTCACATTATATAGGACATGGGACTTCGGAGCTTAATGGGATATCGATCTTCATCATGCTTAATACTTACTTTTCAAGAGAAAGCAATTGTAGACCAGTGTGGTTAAGTGACGGTTACAAGCCTTCATATCCAGTAAGCAGAAGATGAAATATAATTTGATGTTTGCCCTTGTTTGAATACTCCATGAAGATGAGGAAAATACATGTTTGTGTCTAACAGTGTCTGGCATGTGTGATTTCTATTGAGATGGACTCAATCTCAGAGATTCTATTCTCAGCTGTGTCCAGTCTACTGAGAGGCCCATCAAAGATTACTCAAGGAGCCGTCTCATGTAGAAAGACGCCCTCATAGGCTCTCACAAACTGTTGCAAGCATCTCAAATTTTATTGACTGCTGGGTCTTACAATTCCTCACCAGATGGCTTTGAACACAGTTCGATCATCAATCTCATTGATGCTACTGATAATTCTATTGGAACAGCAGGAGATGGCTCTAGCTCCTAAACCTGCCACTCGAAACACCTGTCATCACCTCGAAAGATCTTTCCAATACCCACTGGTACAGTTGTAACTCAATCACTTCGCAAGACAGATAATTGCATGTGGCCAAAGATGTACCTGGTCAACAGGACAGGTTAGACTATCTGCTCTCAGGTAGTCCCTCCAAATCAATGGCTGGACTCGGTTGTTCAAAATGAATAGGAAATCCTAAGGCTTATCAGCAAATTGGAAAGTCATGTTCGAGGTCCTATCAAGCTAGGCTCCTAAAAGATATAGTCCCCACCTGGAGGAGGGCATCAAAGAATTTTAAACAGCTCTTTCATTTTAGGGCCACTATTTGTGCCCTAAGACTATGCTTCTTGTACAGAAGCTAGCTATTAATTTGCCTCCCACTCAAACATGTTTGCTTAAAAACTTTAATTGTGGTTATTAGGGAAGTTCAGAGTGATTTGGGTCACATTACCAGAGATCATGTATCCAAAACACAACTGTAGAGATCTCTCCCAAATGTATCTACCCTTGTTTACTCATGGGAACTTCCTGGGAATGTAACTGACTCATTACATTGTCACAACTGTGGGCAGTTTCCCTAAAATGGGAATCATCCAGTTAGAAAGGGTAGTAAAAAATATGTGTCCAACTTTATCTAAAGTCATCAGTGATGCCATCTGACCCTTGAAAGGTATTCAGGTCGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCAGTTTGGGAGGCTGAGGTGGGCAGACCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCGATATGATGAATTTTTAGTCTCTACTAAAAATACAAAAGTTAGCCAGGCATGGTGGCATGCGCCTGTAATCCCAGCTACTCAGGAGCTGAGACAGGAGAATCACTTGAACACAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGTACCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTAAAAAAAAAAAAAAGAAAAGAAAGAAAGAAAAAAGAAAGGTATTCAGATCAGCCTCAACTCACTGAAACATTCTGCTGACTCCTGCTCTATAACTTGTTGGATCTGCCAGATCATATCACCGAAGTGGTAAGGCTGTTTCTACAACAGCGTACAACTGCTGCTAAGCTGACTTCGGCTCTAGACCCACTCAAAATTGGCAGTGTTCTAAGTCACCTGATAAATGAATCAAAGCAGAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG039381]]
+
[[Category:Intergenic]][[Category:NONHSAG039381]][[Category:Transcripts]]

Latest revision as of 01:10, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT099329

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1741 nt

Genomic location

chr4+:175752879..175797115

Exon number

5

Exons

175752879..175753037,175756000..175756088,175777682..175777758,175789957..175791186,175796946..175797115

Genome context

Sequence
000001 ACTAATGGAT TCTACTTCAC ATTATATAGG ACATGGGACT TCGGAGCTTA ATGGGATATC GATCTTCATC ATGCTTAATA 000080
000081 CTTACTTTTC AAGAGAAAGC AATTGTAGAC CAGTGTGGTT AAGTGACGGT TACAAGCCTT CATATCCAGT AAGCAGAAGA 000160
000161 TGAAATATAA TTTGATGTTT GCCCTTGTTT GAATACTCCA TGAAGATGAG GAAAATACAT GTTTGTGTCT AACAGTGTCT 000240
000241 GGCATGTGTG ATTTCTATTG AGATGGACTC AATCTCAGAG ATTCTATTCT CAGCTGTGTC CAGTCTACTG AGAGGCCCAT 000320
000321 CAAAGATTAC TCAAGGAGCC GTCTCATGTA GAAAGACGCC CTCATAGGCT CTCACAAACT GTTGCAAGCA TCTCAAATTT 000400
000401 TATTGACTGC TGGGTCTTAC AATTCCTCAC CAGATGGCTT TGAACACAGT TCGATCATCA ATCTCATTGA TGCTACTGAT 000480
000481 AATTCTATTG GAACAGCAGG AGATGGCTCT AGCTCCTAAA CCTGCCACTC GAAACACCTG TCATCACCTC GAAAGATCTT 000560
000561 TCCAATACCC ACTGGTACAG TTGTAACTCA ATCACTTCGC AAGACAGATA ATTGCATGTG GCCAAAGATG TACCTGGTCA 000640
000641 ACAGGACAGG TTAGACTATC TGCTCTCAGG TAGTCCCTCC AAATCAATGG CTGGACTCGG TTGTTCAAAA TGAATAGGAA 000720
000721 ATCCTAAGGC TTATCAGCAA ATTGGAAAGT CATGTTCGAG GTCCTATCAA GCTAGGCTCC TAAAAGATAT AGTCCCCACC 000800
000801 TGGAGGAGGG CATCAAAGAA TTTTAAACAG CTCTTTCATT TTAGGGCCAC TATTTGTGCC CTAAGACTAT GCTTCTTGTA 000880
000881 CAGAAGCTAG CTATTAATTT GCCTCCCACT CAAACATGTT TGCTTAAAAA CTTTAATTGT GGTTATTAGG GAAGTTCAGA 000960
000961 GTGATTTGGG TCACATTACC AGAGATCATG TATCCAAAAC ACAACTGTAG AGATCTCTCC CAAATGTATC TACCCTTGTT 001040
001041 TACTCATGGG AACTTCCTGG GAATGTAACT GACTCATTAC ATTGTCACAA CTGTGGGCAG TTTCCCTAAA ATGGGAATCA 001120
001121 TCCAGTTAGA AAGGGTAGTA AAAAATATGT GTCCAACTTT ATCTAAAGTC ATCAGTGATG CCATCTGACC CTTGAAAGGT 001200
001201 ATTCAGGTCG GCCGGGTGTG GTGGCTCACA CCTGTAATCC CAGCAGTTTG GGAGGCTGAG GTGGGCAGAC CACCTGAGGT 001280
001281 CAGGAGTTTG AGACCAGCCT GACCGATATG ATGAATTTTT AGTCTCTACT AAAAATACAA AAGTTAGCCA GGCATGGTGG 001360
001361 CATGCGCCTG TAATCCCAGC TACTCAGGAG CTGAGACAGG AGAATCACTT GAACACAGGA GGCGGAGGTT GCAGTGAGCC 001440
001441 GAGATTGTAC CATTGTACTC CAGCCTGGGC AACAAGAGCA AAACTCTGTC TAAAAAAAAA AAAAAGAAAA GAAAGAAAGA 001520
001521 AAAAAGAAAG GTATTCAGAT CAGCCTCAAC TCACTGAAAC ATTCTGCTGA CTCCTGCTCT ATAACTTGTT GGATCTGCCA 001600
001601 GATCATATCA CCGAAGTGGT AAGGCTGTTT CTACAACAGC GTACAACTGC TGCTAAGCTG ACTTCGGCTC TAGACCCACT 001680
001681 CAAAATTGGC AGTGTTCTAA GTCACCTGAT AAATGAATCA AAGCAGAAAA AAAAAAAAAA A
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Predicted Small Protein

Name NONHSAT099329_smProtein_32:121
Length 30
Molecular weight 3207.7651
Aromaticity 0.0689655172414
Instability index 75.8344827586
Isoelectric point 7.81097412109
Runs 6
Runs residual 0.0073275862069
Runs probability 0.0381263616557
Amino acid sequence MGLRSLMGYRSSSCLILTFQEKAIVDQCG
Secondary structure LLLHHHLLLLLLLLLEEHHHHHHHHHHLL
PRMN -
PiMo -