Difference between revisions of "NONHSAT101311"
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATTTCCTGATCGAACAGCCTCACTTGTGTTGCTGTCAGTGCCAGTAGGGCAGGCAGGAATGCAGCAGAGAGGACTCGCCATCGTGGCCTTGGCTGTCTGTGCGGCCCTACATGCCTCAGAAGCCATACTTCCCATTGCCTCCAGCTGTTGCACGGAGGTTTCACATCATATTTCCAGAAGGCTCCTGGAAAGAGTGAATATGTGTCGCATCCAGAGAGCTGATGGGGATTGTGACTTGGCTGCTGTCATGTGAGTGCTCATCAGCCGGGAGGTCTAAACCTGCACAGTGATTATTTCCCTGCCCAACGAATAATAGGTTGGAAAGGCTTTGCTTGATTACAACATACAAACAATCATCCAAACAAGGGAGGGAAGAGTAAATATTCTGTCCATTAGGCCCCAGGCTCCCTGGAGTAAATTCATAGTCTCTCTGTCCAAAGATGTCCTGAGCCCCATACCAGCACACCATCTACTTCCACCCTGTAGTGCTGTGGTTAGGACTAAATTCCCCCAGTCACCAAAAAGTGTTCATGACTTTCCCAAGCAAAACAAAACCCCAAACAAAAGATAACTCTGT</dnaseq>| | sequence = <dnaseq>ATTTCCTGATCGAACAGCCTCACTTGTGTTGCTGTCAGTGCCAGTAGGGCAGGCAGGAATGCAGCAGAGAGGACTCGCCATCGTGGCCTTGGCTGTCTGTGCGGCCCTACATGCCTCAGAAGCCATACTTCCCATTGCCTCCAGCTGTTGCACGGAGGTTTCACATCATATTTCCAGAAGGCTCCTGGAAAGAGTGAATATGTGTCGCATCCAGAGAGCTGATGGGGATTGTGACTTGGCTGCTGTCATGTGAGTGCTCATCAGCCGGGAGGTCTAAACCTGCACAGTGATTATTTCCCTGCCCAACGAATAATAGGTTGGAAAGGCTTTGCTTGATTACAACATACAAACAATCATCCAAACAAGGGAGGGAAGAGTAAATATTCTGTCCATTAGGCCCCAGGCTCCCTGGAGTAAATTCATAGTCTCTCTGTCCAAAGATGTCCTGAGCCCCATACCAGCACACCATCTACTTCCACCCTGTAGTGCTGTGGTTAGGACTAAATTCCCCCAGTCACCAAAAAGTGTTCATGACTTTCCCAAGCAAAACAAAACCCCAAACAAAAGATAACTCTGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG040313]] | + | [[Category:Sense]][[Category:NONHSAG040313]][[Category:Transcripts]] |
Latest revision as of 01:18, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT101311 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
577 nt |
| Genomic location |
chr5-:43388124..43412476 |
| Exon number |
2 |
| Exons |
43388124..43388578,43412355..43412476 |
| Genome context |
|
| Sequence |
000001 ATTTCCTGAT CGAACAGCCT CACTTGTGTT GCTGTCAGTG CCAGTAGGGC AGGCAGGAAT GCAGCAGAGA GGACTCGCCA 000080
000081 TCGTGGCCTT GGCTGTCTGT GCGGCCCTAC ATGCCTCAGA AGCCATACTT CCCATTGCCT CCAGCTGTTG CACGGAGGTT 000160 000161 TCACATCATA TTTCCAGAAG GCTCCTGGAA AGAGTGAATA TGTGTCGCAT CCAGAGAGCT GATGGGGATT GTGACTTGGC 000240 000241 TGCTGTCATG TGAGTGCTCA TCAGCCGGGA GGTCTAAACC TGCACAGTGA TTATTTCCCT GCCCAACGAA TAATAGGTTG 000320 000321 GAAAGGCTTT GCTTGATTAC AACATACAAA CAATCATCCA AACAAGGGAG GGAAGAGTAA ATATTCTGTC CATTAGGCCC 000400 000401 CAGGCTCCCT GGAGTAAATT CATAGTCTCT CTGTCCAAAG ATGTCCTGAG CCCCATACCA GCACACCATC TACTTCCACC 000480 000481 CTGTAGTGCT GTGGTTAGGA CTAAATTCCC CCAGTCACCA AAAAGTGTTC ATGACTTTCC CAAGCAAAAC AAAACCCCAA 000560 000561 ACAAAAGATA ACTCTGT |
Predicted Small Protein
| Name | NONHSAT101311_smProtein_110:196 |
| Length | 29 |
| Molecular weight | 3339.9077 |
| Aromaticity | 0.178571428571 |
| Instability index | 106.271428571 |
| Isoelectric point | 9.69403076172 |
| Runs | 5 |
| Runs residual | 0.0246478873239 |
| Runs probability | 0.0319378201731 |
| Amino acid sequence | MPQKPYFPLPPAVARRFHIIFPEGSWKE |
| Secondary structure | LLLLLLLLLLHHHHLLEEEELLLLLLLL |
| PRMN | - |
| PiMo | - |
