Difference between revisions of "NONHSAT112714"
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sequence = <dnaseq>GATATTCTCTTTATAAATAGAGCTATGAAGAGATTTAAAGGATGTTAGGCTGCTTTGAAGGTGTAAGACCCCTTCCTTTCCTACCCATCCTCCTCACTCCCTAGCTGGTCCCAGTGGCTCTCTCTCTCGGCAGATTTGGTCTGTGTGTCCATGTACTGGAGAGTCAGTGGGCGCTCATTTCTCAGAGTTATGATGTCCTTGGCCTGGCCTGCTTTTACTCTGCTTGCTTAGATCTGCTGCTCTATGGAAAAGGATTGCTGTGTCGGCCCTTTAGTGAGTGTCTGCGTTTCGTTCAAGTCTACGAGCACAGCCGTGTTCTAACCTCTCAGAGCAATGTCATGCTGGGGGTCCACTCCTCCCTGGCCATGTGGTTTGCCCAGGAATCACAGTGGGACCTGTTTAAGCACTATTTCTCCAACGCTTGCAGTTGGTGAAAAGAACCAATGCCTCGCTATTTGGTGCACATGGCTTTGTCCGATTCCTAGAATGCCATGTGTTAATGTTACAGAAAATGCCAGAGGGTATCTTCATGCATATTCCTCTAGAGCTTCACAGCCAAACCCTTGAGGCTTATTTTGCCATCAGTAACTCCTTCCTGTTCCCCCAGCCATGAGTGAATATGCTGAATGAGGACCTTTTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTTGACACCTGCTTGACCAGGATTTGGATAAAAGGAGAATTTCTGCAGGAAAATAACTCTTAGAAAAGAAACTTAGGAATACAGAGATTTGACAGAGTGGCTGATGTCAAGGAGAACAAGGATGCAGAAGAAACTCAAGATGTATGTATTAAAACAAAAGAACAATAACCTGAAGGGACCATGATTCTGTTATTGTATATAACACAAGGAAATGCCCCAGATTCTCCTTTAAAAGATATAATGTACATATTAA</dnaseq>| | sequence = <dnaseq>GATATTCTCTTTATAAATAGAGCTATGAAGAGATTTAAAGGATGTTAGGCTGCTTTGAAGGTGTAAGACCCCTTCCTTTCCTACCCATCCTCCTCACTCCCTAGCTGGTCCCAGTGGCTCTCTCTCTCGGCAGATTTGGTCTGTGTGTCCATGTACTGGAGAGTCAGTGGGCGCTCATTTCTCAGAGTTATGATGTCCTTGGCCTGGCCTGCTTTTACTCTGCTTGCTTAGATCTGCTGCTCTATGGAAAAGGATTGCTGTGTCGGCCCTTTAGTGAGTGTCTGCGTTTCGTTCAAGTCTACGAGCACAGCCGTGTTCTAACCTCTCAGAGCAATGTCATGCTGGGGGTCCACTCCTCCCTGGCCATGTGGTTTGCCCAGGAATCACAGTGGGACCTGTTTAAGCACTATTTCTCCAACGCTTGCAGTTGGTGAAAAGAACCAATGCCTCGCTATTTGGTGCACATGGCTTTGTCCGATTCCTAGAATGCCATGTGTTAATGTTACAGAAAATGCCAGAGGGTATCTTCATGCATATTCCTCTAGAGCTTCACAGCCAAACCCTTGAGGCTTATTTTGCCATCAGTAACTCCTTCCTGTTCCCCCAGCCATGAGTGAATATGCTGAATGAGGACCTTTTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTTGACACCTGCTTGACCAGGATTTGGATAAAAGGAGAATTTCTGCAGGAAAATAACTCTTAGAAAAGAAACTTAGGAATACAGAGATTTGACAGAGTGGCTGATGTCAAGGAGAACAAGGATGCAGAAGAAACTCAAGATGTATGTATTAAAACAAAAGAACAATAACCTGAAGGGACCATGATTCTGTTATTGTATATAACACAAGGAAATGCCCCAGATTCTCCTTTAAAAGATATAATGTACATATTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG043757]] | + | [[Category:Intergenic]][[Category:NONHSAG043757]][[Category:Transcripts]] |
Latest revision as of 01:52, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT112714 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1020 nt |
| Genomic location |
chr6+:41105829..41108503 |
| Exon number |
6 |
| Exons |
41105829..41106080,41106347..41106464,41106878..41107075,41107448..41107517,41107594..41107807,41108336..41108503 |
| Genome context |
|
| Sequence |
000001 GATATTCTCT TTATAAATAG AGCTATGAAG AGATTTAAAG GATGTTAGGC TGCTTTGAAG GTGTAAGACC CCTTCCTTTC 000080
000081 CTACCCATCC TCCTCACTCC CTAGCTGGTC CCAGTGGCTC TCTCTCTCGG CAGATTTGGT CTGTGTGTCC ATGTACTGGA 000160 000161 GAGTCAGTGG GCGCTCATTT CTCAGAGTTA TGATGTCCTT GGCCTGGCCT GCTTTTACTC TGCTTGCTTA GATCTGCTGC 000240 000241 TCTATGGAAA AGGATTGCTG TGTCGGCCCT TTAGTGAGTG TCTGCGTTTC GTTCAAGTCT ACGAGCACAG CCGTGTTCTA 000320 000321 ACCTCTCAGA GCAATGTCAT GCTGGGGGTC CACTCCTCCC TGGCCATGTG GTTTGCCCAG GAATCACAGT GGGACCTGTT 000400 000401 TAAGCACTAT TTCTCCAACG CTTGCAGTTG GTGAAAAGAA CCAATGCCTC GCTATTTGGT GCACATGGCT TTGTCCGATT 000480 000481 CCTAGAATGC CATGTGTTAA TGTTACAGAA AATGCCAGAG GGTATCTTCA TGCATATTCC TCTAGAGCTT CACAGCCAAA 000560 000561 CCCTTGAGGC TTATTTTGCC ATCAGTAACT CCTTCCTGTT CCCCCAGCCA TGAGTGAATA TGCTGAATGA GGACCTTTTA 000640 000641 CTGTAAGGAG TTCTTCTCTC AATGTGTGAC CTGCCCTGTC TATCACCAGT GGGTATCTGA GCTTAAGGCC TCTGTAATGA 000720 000721 GATGTGAAAA GAGAGAATTG ATGTCCCTGA CTAACAGCAT CAGACCTTTT GACACCTGCT TGACCAGGAT TTGGATAAAA 000800 000801 GGAGAATTTC TGCAGGAAAA TAACTCTTAG AAAAGAAACT TAGGAATACA GAGATTTGAC AGAGTGGCTG ATGTCAAGGA 000880 000881 GAACAAGGAT GCAGAAGAAA CTCAAGATGT ATGTATTAAA ACAAAAGAAC AATAACCTGA AGGGACCATG ATTCTGTTAT 000960 000961 TGTATATAAC ACAAGGAAAT GCCCCAGATT CTCCTTTAAA AGATATAATG TACATATTAA |
Predicted Small Protein
| Name | NONHSAT112714_smProtein_626:829 |
| Length | 68 |
| Molecular weight | 8061.3045 |
| Aromaticity | 0.134328358209 |
| Instability index | 41.953880597 |
| Isoelectric point | 8.35028076172 |
| Runs | 12 |
| Runs residual | 0.0357896381965 |
| Runs probability | 0.0485706294531 |
| Amino acid sequence | MRTFYCKEFFSQCVTCPVYHQWVSELKASVMRCEKRELMSLTNSIRPFDTCLTRIWIKGE FLQENNS |
| Secondary structure | LLEEEHHHHHLLEELLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLEEEEEEELL EELLLLL |
| PRMN | - |
| PiMo | - |
