Difference between revisions of "NONHSAT113692"
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sequence = <dnaseq>AATTTAGTTCAGCTTCAAGAGAATTTTTCTTTTCTTCATGGGGAGGCTGAAGAATCAGAACTGTCATACCAAAGAATGAAAAGCAAGCCTAGGGAGAACAAGACAGTCTGATGTTTACATGGGGTTAACTTATTTGATCAGTGAAATCAGAAAAGGATCATTCTGCATTCGTGGACTACTCTCATTGACACACTCGCTTACCCATCTGAAAACAGCAACACAGTCTGGGTTCCTGATTTGTATCTGTTACCCTTCATGGAAATGGCTGGTGAAGCAAAACTATGTGTGTAAAACTGCATCTGCCACAGGCTGCTTGTCCACAAAAGCAGCAAAGCATCTCTATGGAATACCTCCGTATGGATCTGTAAAGAAGAGTCCCACTTCAGTCAAAGACAGTAGATTATGAGTTGGTATGTATTTCCACTATTCCTTGCATTTGGCATGAAATCTTACACCCAGTCACTGAGATACAAAGAGTGTAGGAGAACAAGGAGAGGAATTACACTGTAGCCAAGCTTCTGCGGGCTATGACAGAGAGCAACTAACTGTCCTTGCAAACAGAGAAATGTCTTCCGAACTCAACATAATATTCTAACAGAATTGTAGGTAAGTGATTTCAGTAAATACTGAAATTGGGAAATGAGTAGTGTTTAGCTGTGGGTACTTTCAGAGGAATGGGAAATCCCAATGTTGTGACTGCTATCACTCAAGAGTAGCTTAGGACTGCCACGTAAGATAGGGACCCCTGGCCCTATCCATAAAGGGAAGGGCTCCTAAGAAGCACTGGTTCTCCACCATCCGGAGCTACACTTCCCAACACAGACTTTCACCCTTAATTTTCATTCAACAATTAGTGGGAAGACTGTATTTAGC</dnaseq>| | sequence = <dnaseq>AATTTAGTTCAGCTTCAAGAGAATTTTTCTTTTCTTCATGGGGAGGCTGAAGAATCAGAACTGTCATACCAAAGAATGAAAAGCAAGCCTAGGGAGAACAAGACAGTCTGATGTTTACATGGGGTTAACTTATTTGATCAGTGAAATCAGAAAAGGATCATTCTGCATTCGTGGACTACTCTCATTGACACACTCGCTTACCCATCTGAAAACAGCAACACAGTCTGGGTTCCTGATTTGTATCTGTTACCCTTCATGGAAATGGCTGGTGAAGCAAAACTATGTGTGTAAAACTGCATCTGCCACAGGCTGCTTGTCCACAAAAGCAGCAAAGCATCTCTATGGAATACCTCCGTATGGATCTGTAAAGAAGAGTCCCACTTCAGTCAAAGACAGTAGATTATGAGTTGGTATGTATTTCCACTATTCCTTGCATTTGGCATGAAATCTTACACCCAGTCACTGAGATACAAAGAGTGTAGGAGAACAAGGAGAGGAATTACACTGTAGCCAAGCTTCTGCGGGCTATGACAGAGAGCAACTAACTGTCCTTGCAAACAGAGAAATGTCTTCCGAACTCAACATAATATTCTAACAGAATTGTAGGTAAGTGATTTCAGTAAATACTGAAATTGGGAAATGAGTAGTGTTTAGCTGTGGGTACTTTCAGAGGAATGGGAAATCCCAATGTTGTGACTGCTATCACTCAAGAGTAGCTTAGGACTGCCACGTAAGATAGGGACCCCTGGCCCTATCCATAAAGGGAAGGGCTCCTAAGAAGCACTGGTTCTCCACCATCCGGAGCTACACTTCCCAACACAGACTTTCACCCTTAATTTTCATTCAACAATTAGTGGGAAGACTGTATTTAGC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG044200]] | + | [[Category:Antisense]][[Category:NONHSAG044200]][[Category:Transcripts]] |
Latest revision as of 01:56, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT113692 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
873 nt |
Genomic location |
chr6+:80131799..80196367 |
Exon number |
4 |
Exons |
80131799..80131920,80181141..80181234,80190967..80191157,80195902..80196367 |
Genome context |
|
Sequence |
000001 AATTTAGTTC AGCTTCAAGA GAATTTTTCT TTTCTTCATG GGGAGGCTGA AGAATCAGAA CTGTCATACC AAAGAATGAA 000080
000081 AAGCAAGCCT AGGGAGAACA AGACAGTCTG ATGTTTACAT GGGGTTAACT TATTTGATCA GTGAAATCAG AAAAGGATCA 000160 000161 TTCTGCATTC GTGGACTACT CTCATTGACA CACTCGCTTA CCCATCTGAA AACAGCAACA CAGTCTGGGT TCCTGATTTG 000240 000241 TATCTGTTAC CCTTCATGGA AATGGCTGGT GAAGCAAAAC TATGTGTGTA AAACTGCATC TGCCACAGGC TGCTTGTCCA 000320 000321 CAAAAGCAGC AAAGCATCTC TATGGAATAC CTCCGTATGG ATCTGTAAAG AAGAGTCCCA CTTCAGTCAA AGACAGTAGA 000400 000401 TTATGAGTTG GTATGTATTT CCACTATTCC TTGCATTTGG CATGAAATCT TACACCCAGT CACTGAGATA CAAAGAGTGT 000480 000481 AGGAGAACAA GGAGAGGAAT TACACTGTAG CCAAGCTTCT GCGGGCTATG ACAGAGAGCA ACTAACTGTC CTTGCAAACA 000560 000561 GAGAAATGTC TTCCGAACTC AACATAATAT TCTAACAGAA TTGTAGGTAA GTGATTTCAG TAAATACTGA AATTGGGAAA 000640 000641 TGAGTAGTGT TTAGCTGTGG GTACTTTCAG AGGAATGGGA AATCCCAATG TTGTGACTGC TATCACTCAA GAGTAGCTTA 000720 000721 GGACTGCCAC GTAAGATAGG GACCCCTGGC CCTATCCATA AAGGGAAGGG CTCCTAAGAA GCACTGGTTC TCCACCATCC 000800 000801 GGAGCTACAC TTCCCAACAC AGACTTTCAC CCTTAATTTT CATTCAACAA TTAGTGGGAA GACTGTATTT AGC |
Predicted Small Protein
Name | NONHSAT113692_smProtein_281:367 |
Length | 29 |
Molecular weight | 3262.9099 |
Aromaticity | 0.0357142857143 |
Instability index | 83.9892857143 |
Isoelectric point | 7.82440185547 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.0437731849496 |
Amino acid sequence | MCVKLHLPQAACPQKQQSISMEYLRMDL |
Secondary structure | LEEELLLLLLLLLHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |