Difference between revisions of "NONHSAT114082"
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sequence = <dnaseq>CCGCTGCAGAGGTAGGATTCTCCAGAAAAATGTTTTCCTCCTCCTCTGTTGTCAACAGCACAAGAAAAGTAAGGAGGTTTGCACCATTCCGTCCCCAGCTCCAGCTCTAAGCTGTCAGTCAGGAACGTCGATGCAGCAGAACAGTTCTCCATTGTTTACTTCATGTTCTGAAACACTTGGGGTTCGTCGTATCATTAAGGGCTCCAAAGAGAAGGTGTGAAGAGATTCCTGTTGGGGGGGGGGGGGTGGGGCCGAGAGAGTGGGGATTACTTCAGAAAGTTCTCAAGACGTCCGCCAGCAGGAAGGAAAAACAAACGAACAAACCCAGAGGCCAAATTCCCAATTCCCCCTCGCCCTCCGTCCATCAAGGCTGTCAGAACTTAAGACAAAATGCACAACCAACTGGCTGTGGCAGGGACCTCGAAATCCGGCCACTAAGTCGGGCTCTGCAGCCCAGGACAAGGTGAAAAGCAAAGAAATGTCTGCAGGACATAGCGTCCCGGGCTTGCCTAGAACTGCGCCCTCCGCAACGTTTCTAAACCACTCTCCGCCCGTTTCCCAGCAGCAGGGTGGAGAACGCTCCCTCCCCGGCTCGGGGTGGAAATTAGGAAAGCAACCCCTAGGGCCAACCCCGACCCTCCAAGGAGGAGGCGAGACCCACCAGGCCCACGCCTGGCAGCACTCGGGCGGAGAAGGCGGGGTGCCGGTATCCCGCGTACCCGGCTGCAGCAAGGACCCGGGGCGTCGGTTACCCGCGGTGCCTGTCGTACCCGCTCACATTTCCAGCTCCCGAAACCTGCCTCCTGTGACCCAGACCACCAACAGGAATCTTTGGGGTCTAAACCGCAAACAGGCGAAATTCCCGCCACCGCGCGCCCGCGCTCCGGAAAGGCGGGGCCACGGCGCAGCCCTCCCCCGGCTACCAATCGCCTCGCGATATCTGCGCGGAAACAGTCGGAGCCCCACGAATTCTCGCGAGAGTCCGTCAGTCCGGGACGAGGTACTGAGAAACTTTTTTTTTTGTACCTTTAATTGGTGCGTTCGGCTGAAAGGCGGGGCCTGGTAAAAAAAAAAAAACAGAACTGCTGCTGAGGCGGAGGAGAGGACTTAAGGACTATGGGTTTATCCTCTGGCCGGACCAAAGAGAAGATATTTACTCCAGTGAGTGCGAACAGACACTCTCTGCGTAGGATCATCATGCCGAGCATAAACTGGACTTTCCCACTTGCCTGGCAGGAGTCACACAGATCCCTGCGTGCTAAATGAACATCTGAGCAGAGAAGGATGAATGCTGCATAATTAAGTACAGTA</dnaseq>| | sequence = <dnaseq>CCGCTGCAGAGGTAGGATTCTCCAGAAAAATGTTTTCCTCCTCCTCTGTTGTCAACAGCACAAGAAAAGTAAGGAGGTTTGCACCATTCCGTCCCCAGCTCCAGCTCTAAGCTGTCAGTCAGGAACGTCGATGCAGCAGAACAGTTCTCCATTGTTTACTTCATGTTCTGAAACACTTGGGGTTCGTCGTATCATTAAGGGCTCCAAAGAGAAGGTGTGAAGAGATTCCTGTTGGGGGGGGGGGGGTGGGGCCGAGAGAGTGGGGATTACTTCAGAAAGTTCTCAAGACGTCCGCCAGCAGGAAGGAAAAACAAACGAACAAACCCAGAGGCCAAATTCCCAATTCCCCCTCGCCCTCCGTCCATCAAGGCTGTCAGAACTTAAGACAAAATGCACAACCAACTGGCTGTGGCAGGGACCTCGAAATCCGGCCACTAAGTCGGGCTCTGCAGCCCAGGACAAGGTGAAAAGCAAAGAAATGTCTGCAGGACATAGCGTCCCGGGCTTGCCTAGAACTGCGCCCTCCGCAACGTTTCTAAACCACTCTCCGCCCGTTTCCCAGCAGCAGGGTGGAGAACGCTCCCTCCCCGGCTCGGGGTGGAAATTAGGAAAGCAACCCCTAGGGCCAACCCCGACCCTCCAAGGAGGAGGCGAGACCCACCAGGCCCACGCCTGGCAGCACTCGGGCGGAGAAGGCGGGGTGCCGGTATCCCGCGTACCCGGCTGCAGCAAGGACCCGGGGCGTCGGTTACCCGCGGTGCCTGTCGTACCCGCTCACATTTCCAGCTCCCGAAACCTGCCTCCTGTGACCCAGACCACCAACAGGAATCTTTGGGGTCTAAACCGCAAACAGGCGAAATTCCCGCCACCGCGCGCCCGCGCTCCGGAAAGGCGGGGCCACGGCGCAGCCCTCCCCCGGCTACCAATCGCCTCGCGATATCTGCGCGGAAACAGTCGGAGCCCCACGAATTCTCGCGAGAGTCCGTCAGTCCGGGACGAGGTACTGAGAAACTTTTTTTTTTGTACCTTTAATTGGTGCGTTCGGCTGAAAGGCGGGGCCTGGTAAAAAAAAAAAAACAGAACTGCTGCTGAGGCGGAGGAGAGGACTTAAGGACTATGGGTTTATCCTCTGGCCGGACCAAAGAGAAGATATTTACTCCAGTGAGTGCGAACAGACACTCTCTGCGTAGGATCATCATGCCGAGCATAAACTGGACTTTCCCACTTGCCTGGCAGGAGTCACACAGATCCCTGCGTGCTAAATGAACATCTGAGCAGAGAAGGATGAATGCTGCATAATTAAGTACAGTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG044418]] | + | [[Category:Intergenic]][[Category:NONHSAG044418]][[Category:Transcripts]] |
Latest revision as of 01:57, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114082 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1311 nt |
Genomic location |
chr6+:97730202..97754402 |
Exon number |
3 |
Exons |
97730202..97731373,97753870..97753972,97754367..97754402 |
Genome context |
|
Sequence |
000001 CCGCTGCAGA GGTAGGATTC TCCAGAAAAA TGTTTTCCTC CTCCTCTGTT GTCAACAGCA CAAGAAAAGT AAGGAGGTTT 000080
000081 GCACCATTCC GTCCCCAGCT CCAGCTCTAA GCTGTCAGTC AGGAACGTCG ATGCAGCAGA ACAGTTCTCC ATTGTTTACT 000160 000161 TCATGTTCTG AAACACTTGG GGTTCGTCGT ATCATTAAGG GCTCCAAAGA GAAGGTGTGA AGAGATTCCT GTTGGGGGGG 000240 000241 GGGGGGTGGG GCCGAGAGAG TGGGGATTAC TTCAGAAAGT TCTCAAGACG TCCGCCAGCA GGAAGGAAAA ACAAACGAAC 000320 000321 AAACCCAGAG GCCAAATTCC CAATTCCCCC TCGCCCTCCG TCCATCAAGG CTGTCAGAAC TTAAGACAAA ATGCACAACC 000400 000401 AACTGGCTGT GGCAGGGACC TCGAAATCCG GCCACTAAGT CGGGCTCTGC AGCCCAGGAC AAGGTGAAAA GCAAAGAAAT 000480 000481 GTCTGCAGGA CATAGCGTCC CGGGCTTGCC TAGAACTGCG CCCTCCGCAA CGTTTCTAAA CCACTCTCCG CCCGTTTCCC 000560 000561 AGCAGCAGGG TGGAGAACGC TCCCTCCCCG GCTCGGGGTG GAAATTAGGA AAGCAACCCC TAGGGCCAAC CCCGACCCTC 000640 000641 CAAGGAGGAG GCGAGACCCA CCAGGCCCAC GCCTGGCAGC ACTCGGGCGG AGAAGGCGGG GTGCCGGTAT CCCGCGTACC 000720 000721 CGGCTGCAGC AAGGACCCGG GGCGTCGGTT ACCCGCGGTG CCTGTCGTAC CCGCTCACAT TTCCAGCTCC CGAAACCTGC 000800 000801 CTCCTGTGAC CCAGACCACC AACAGGAATC TTTGGGGTCT AAACCGCAAA CAGGCGAAAT TCCCGCCACC GCGCGCCCGC 000880 000881 GCTCCGGAAA GGCGGGGCCA CGGCGCAGCC CTCCCCCGGC TACCAATCGC CTCGCGATAT CTGCGCGGAA ACAGTCGGAG 000960 000961 CCCCACGAAT TCTCGCGAGA GTCCGTCAGT CCGGGACGAG GTACTGAGAA ACTTTTTTTT TTGTACCTTT AATTGGTGCG 001040 001041 TTCGGCTGAA AGGCGGGGCC TGGTAAAAAA AAAAAAACAG AACTGCTGCT GAGGCGGAGG AGAGGACTTA AGGACTATGG 001120 001121 GTTTATCCTC TGGCCGGACC AAAGAGAAGA TATTTACTCC AGTGAGTGCG AACAGACACT CTCTGCGTAG GATCATCATG 001200 001201 CCGAGCATAA ACTGGACTTT CCCACTTGCC TGGCAGGAGT CACACAGATC CCTGCGTGCT AAATGAACAT CTGAGCAGAG 001280 001281 AAGGATGAAT GCTGCATAAT TAAGTACAGT A |
Predicted Small Protein
Name | NONHSAT114082_smProtein_29:109 |
Length | 27 |
Molecular weight | 3039.5157 |
Aromaticity | 0.115384615385 |
Instability index | 92.7730769231 |
Isoelectric point | 12.4790649414 |
Runs | 5 |
Runs residual | 0.0169946332737 |
Runs probability | 0.0340399222752 |
Amino acid sequence | MFSSSSVVNSTRKVRRFAPFRPQLQL |
Secondary structure | LLLLLLEELLHHHHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |