Difference between revisions of "NONHSAT115016"
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sequence = <dnaseq>CAATCATGCACTTAACTACCAAAAAGAGTAAACTCCTCTCAGAGACTTCTTAATACAGTTCAGTGCAAATAAAATACATTTGCTGTTTGATGTAGCATGAGAAATCCCAAGTCCTTCTGTTCCTTTACTGAAAAGTAGCTGTTTGTAAGTAAGATCTGCATCATAAAAACTTTCTAAATCCCTAAGTAAGAGATATCAAGTGCCCAGCAGTTTCCTAAATGTCAGTACACATAGGTAGCCAGTCACCCTCAAAAAGTCCAGCAGTTTTATCAGGAAGGAATCTAAAGATATCTATCTTCCAAGCTGGCTCTGGGTCTCTCAGCTTTTTCAAACTAAATGTGTGGTCGTGGGATTGCTTGCTTTCGCAGGTTCTAAACGCTGTTTCCCTGGTCTGTTTTTCAGTATCTCGCACCTGAGGTGCTTCATAAGCAGCCTTATGACAGGACTGTGGACTGGTGGTGCCTGGGAGCTGTCTTGTATGAGATGCTGTATGGCCTGCCGCCTTTTTATAGCCGAAACACAGCTGAAATGTACGACAACATTCTGAACAAGCCTCTCCAGCTGAAACCAAA</dnaseq>| | sequence = <dnaseq>CAATCATGCACTTAACTACCAAAAAGAGTAAACTCCTCTCAGAGACTTCTTAATACAGTTCAGTGCAAATAAAATACATTTGCTGTTTGATGTAGCATGAGAAATCCCAAGTCCTTCTGTTCCTTTACTGAAAAGTAGCTGTTTGTAAGTAAGATCTGCATCATAAAAACTTTCTAAATCCCTAAGTAAGAGATATCAAGTGCCCAGCAGTTTCCTAAATGTCAGTACACATAGGTAGCCAGTCACCCTCAAAAAGTCCAGCAGTTTTATCAGGAAGGAATCTAAAGATATCTATCTTCCAAGCTGGCTCTGGGTCTCTCAGCTTTTTCAAACTAAATGTGTGGTCGTGGGATTGCTTGCTTTCGCAGGTTCTAAACGCTGTTTCCCTGGTCTGTTTTTCAGTATCTCGCACCTGAGGTGCTTCATAAGCAGCCTTATGACAGGACTGTGGACTGGTGGTGCCTGGGAGCTGTCTTGTATGAGATGCTGTATGGCCTGCCGCCTTTTTATAGCCGAAACACAGCTGAAATGTACGACAACATTCTGAACAAGCCTCTCCAGCTGAAACCAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG044888]] | + | [[Category:Sense]][[Category:NONHSAG044888]][[Category:Transcripts]] |
Latest revision as of 02:02, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT115016 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
572 nt |
| Genomic location |
chr6-:134492243..134493272 |
| Exon number |
2 |
| Exons |
134492243..134492316,134492775..134493272 |
| Genome context |
|
| Sequence |
000001 CAATCATGCA CTTAACTACC AAAAAGAGTA AACTCCTCTC AGAGACTTCT TAATACAGTT CAGTGCAAAT AAAATACATT 000080
000081 TGCTGTTTGA TGTAGCATGA GAAATCCCAA GTCCTTCTGT TCCTTTACTG AAAAGTAGCT GTTTGTAAGT AAGATCTGCA 000160 000161 TCATAAAAAC TTTCTAAATC CCTAAGTAAG AGATATCAAG TGCCCAGCAG TTTCCTAAAT GTCAGTACAC ATAGGTAGCC 000240 000241 AGTCACCCTC AAAAAGTCCA GCAGTTTTAT CAGGAAGGAA TCTAAAGATA TCTATCTTCC AAGCTGGCTC TGGGTCTCTC 000320 000321 AGCTTTTTCA AACTAAATGT GTGGTCGTGG GATTGCTTGC TTTCGCAGGT TCTAAACGCT GTTTCCCTGG TCTGTTTTTC 000400 000401 AGTATCTCGC ACCTGAGGTG CTTCATAAGC AGCCTTATGA CAGGACTGTG GACTGGTGGT GCCTGGGAGC TGTCTTGTAT 000480 000481 GAGATGCTGT ATGGCCTGCC GCCTTTTTAT AGCCGAAACA CAGCTGAAAT GTACGACAAC ATTCTGAACA AGCCTCTCCA 000560 000561 GCTGAAACCA AA |
Predicted Small Protein
| Name | NONHSAT115016_smProtein_218:415 |
| Length | 66 |
| Molecular weight | 6974.0058 |
| Aromaticity | 0.0923076923077 |
| Instability index | 55.9323076923 |
| Isoelectric point | 9.84613037109 |
| Runs | 12 |
| Runs residual | 0.0343269230769 |
| Runs probability | 0.0515957133604 |
| Amino acid sequence | MSVHIGSQSPSKSPAVLSGRNLKISIFQAGSGSLSFFKLNVWSWDCLLSQVLNAVSLVCF SVSRT |
| Secondary structure | LEEEELLLLLLLLLEEEELLLEEEEEEEELLLEEEEEEEEEEEHHHHHHHHHLLEEEEEE EEEEL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLL LLLLL |
| PiMo | oooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiii iiiii |
