Difference between revisions of "NONHSAT115085"

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sequence = <dnaseq>GCCTCCACCGCCTTCTTCCAGGAGGAGGGGCCGTGCGGCGCCTGCCCGGGGGCCCTCAGGCCGCAGGCGGGCGCGAGCTTCAGGGAACTTAGGGGGCTCCCGCCTCCCCGGCCACGCGAGCGGGAACAGTCTCCTCCACTCGGAGCGATTATAGATCCAGACTCCTGTGCCTGACCACTGCCCATGGCCAACTCTCTGCTGATGACTGGACTTGACTACACAAGTTGTTGGCCATCTTAAAACCACTCAAAGTTGACGGTCTCCTCTCCTGCCTCCTGCGGCTTCCATTACCATGGCAGAGACTGTGGTGTCTGAGGTGGTGTAGCGTACTGAAGCAAGGCTGTCTTGAAGAAGAGGAGACAACTCACAATTCTACCACCTTTGTTGACCTCTTCTTCTCCCCCAGCTTATTGCTGTAGAGGCTACCTGAGCTCATTGTCCCTGGAGATGGACCAAATAGAAGAATAAGCAGTGCCTGTGTGGTGAGCTTCAAGAGGCATCTGTTCTCTGGGGAGTGGGTGGGTGGTAAAGCAAAGACGGGAGATGTGTATATTAGCTATCCATTACTGTATAATTAATTATACACAAAACTAAACTATACACTAAACTAAAACTTCACAGCTTAAAACAGGAAATATGTATTATCTCACACAATTTCTGAGAGTCAGGAATCTGAAAATGGCTTAGCTAGTTTGGTTCTGGCTCAGGGTGACCTATGGAGTTGCAGCCAAGATGTCATCTGGGACTACTATCATTGGAAGGCTCAGCTGGGGCTGGAGGCTACACTTCCAAGATGGCTCACTTATAGGGCTATTGGTGGGAGGCTTCAGTTCCTCTCCACATGAAACTTTCCTCATGCCATGGAACTGGCTTCCCTCAGAGTGAAAGACCCAAGAGAGAGACTAAGACAGAAGCTGCAATGTTTTTATGACCTAGTCTTGGAAGTGACTTACTGTCATTTCTACTGTATTTTATTCATTAGAAGCAAGTCATTAAGTCCAGCCCACATTCAAAGTAAGAGGATTTAAGCTGAACCTCTTGAAAAAATGGTATCAAAGTATTTACGGACATTTTAAAAACTACCACAATACATATAGGTGAACTTCACAAGGTGTAGACATGGGCTGAGACGGAATATTGGATAATATCTCATTCTGCAAACAGCAGCCTCATCTGTAATAAAATCCCAGCATTCAGAAATTATCACGATCAAGTAGGAAAAGGGCTTGTTGGAAAAAACTTATCAAAGATGTTACTTCATTTATCCATTTATTCTGAGCCATAGCATAATAGCGACAAATTGTGTGTCCTGTGTAATTTGGATACCTCTGCTCAATAATAGCTGAACAGATTTTATCCTATTTTTAGAATAGTTAATATATACACATGGCACAAAATTTAAAAGGTATAAAAGTTTCTGGTTCAAAAATAAGATTCCCTCATTTTCTTTTTTTCTGATTCTTTGAATGCAGTTCGATTTACTGATTTCTCATGTAGCCTTAGAAAGTATTCTATGTACTTACAAACATATATGTACACATATTTTTTCTTTCCCACAAATAAAATACTGTATGCATTGTTAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>GCCTCCACCGCCTTCTTCCAGGAGGAGGGGCCGTGCGGCGCCTGCCCGGGGGCCCTCAGGCCGCAGGCGGGCGCGAGCTTCAGGGAACTTAGGGGGCTCCCGCCTCCCCGGCCACGCGAGCGGGAACAGTCTCCTCCACTCGGAGCGATTATAGATCCAGACTCCTGTGCCTGACCACTGCCCATGGCCAACTCTCTGCTGATGACTGGACTTGACTACACAAGTTGTTGGCCATCTTAAAACCACTCAAAGTTGACGGTCTCCTCTCCTGCCTCCTGCGGCTTCCATTACCATGGCAGAGACTGTGGTGTCTGAGGTGGTGTAGCGTACTGAAGCAAGGCTGTCTTGAAGAAGAGGAGACAACTCACAATTCTACCACCTTTGTTGACCTCTTCTTCTCCCCCAGCTTATTGCTGTAGAGGCTACCTGAGCTCATTGTCCCTGGAGATGGACCAAATAGAAGAATAAGCAGTGCCTGTGTGGTGAGCTTCAAGAGGCATCTGTTCTCTGGGGAGTGGGTGGGTGGTAAAGCAAAGACGGGAGATGTGTATATTAGCTATCCATTACTGTATAATTAATTATACACAAAACTAAACTATACACTAAACTAAAACTTCACAGCTTAAAACAGGAAATATGTATTATCTCACACAATTTCTGAGAGTCAGGAATCTGAAAATGGCTTAGCTAGTTTGGTTCTGGCTCAGGGTGACCTATGGAGTTGCAGCCAAGATGTCATCTGGGACTACTATCATTGGAAGGCTCAGCTGGGGCTGGAGGCTACACTTCCAAGATGGCTCACTTATAGGGCTATTGGTGGGAGGCTTCAGTTCCTCTCCACATGAAACTTTCCTCATGCCATGGAACTGGCTTCCCTCAGAGTGAAAGACCCAAGAGAGAGACTAAGACAGAAGCTGCAATGTTTTTATGACCTAGTCTTGGAAGTGACTTACTGTCATTTCTACTGTATTTTATTCATTAGAAGCAAGTCATTAAGTCCAGCCCACATTCAAAGTAAGAGGATTTAAGCTGAACCTCTTGAAAAAATGGTATCAAAGTATTTACGGACATTTTAAAAACTACCACAATACATATAGGTGAACTTCACAAGGTGTAGACATGGGCTGAGACGGAATATTGGATAATATCTCATTCTGCAAACAGCAGCCTCATCTGTAATAAAATCCCAGCATTCAGAAATTATCACGATCAAGTAGGAAAAGGGCTTGTTGGAAAAAACTTATCAAAGATGTTACTTCATTTATCCATTTATTCTGAGCCATAGCATAATAGCGACAAATTGTGTGTCCTGTGTAATTTGGATACCTCTGCTCAATAATAGCTGAACAGATTTTATCCTATTTTTAGAATAGTTAATATATACACATGGCACAAAATTTAAAAGGTATAAAAGTTTCTGGTTCAAAAATAAGATTCCCTCATTTTCTTTTTTTCTGATTCTTTGAATGCAGTTCGATTTACTGATTTCTCATGTAGCCTTAGAAAGTATTCTATGTACTTACAAACATATATGTACACATATTTTTTCTTTCCCACAAATAAAATACTGTATGCATTGTTAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG044916]]
+
[[Category:Intergenic]][[Category:NONHSAG044916]][[Category:Transcripts]]

Latest revision as of 02:02, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT115085

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1596 nt

Genomic location

chr6+:135818939..136011976

Exon number

4

Exons

135818939..135819138,135963331..135963414,135993432..135993567,136010761..136011976

Genome context

Sequence
000001 GCCTCCACCG CCTTCTTCCA GGAGGAGGGG CCGTGCGGCG CCTGCCCGGG GGCCCTCAGG CCGCAGGCGG GCGCGAGCTT 000080
000081 CAGGGAACTT AGGGGGCTCC CGCCTCCCCG GCCACGCGAG CGGGAACAGT CTCCTCCACT CGGAGCGATT ATAGATCCAG 000160
000161 ACTCCTGTGC CTGACCACTG CCCATGGCCA ACTCTCTGCT GATGACTGGA CTTGACTACA CAAGTTGTTG GCCATCTTAA 000240
000241 AACCACTCAA AGTTGACGGT CTCCTCTCCT GCCTCCTGCG GCTTCCATTA CCATGGCAGA GACTGTGGTG TCTGAGGTGG 000320
000321 TGTAGCGTAC TGAAGCAAGG CTGTCTTGAA GAAGAGGAGA CAACTCACAA TTCTACCACC TTTGTTGACC TCTTCTTCTC 000400
000401 CCCCAGCTTA TTGCTGTAGA GGCTACCTGA GCTCATTGTC CCTGGAGATG GACCAAATAG AAGAATAAGC AGTGCCTGTG 000480
000481 TGGTGAGCTT CAAGAGGCAT CTGTTCTCTG GGGAGTGGGT GGGTGGTAAA GCAAAGACGG GAGATGTGTA TATTAGCTAT 000560
000561 CCATTACTGT ATAATTAATT ATACACAAAA CTAAACTATA CACTAAACTA AAACTTCACA GCTTAAAACA GGAAATATGT 000640
000641 ATTATCTCAC ACAATTTCTG AGAGTCAGGA ATCTGAAAAT GGCTTAGCTA GTTTGGTTCT GGCTCAGGGT GACCTATGGA 000720
000721 GTTGCAGCCA AGATGTCATC TGGGACTACT ATCATTGGAA GGCTCAGCTG GGGCTGGAGG CTACACTTCC AAGATGGCTC 000800
000801 ACTTATAGGG CTATTGGTGG GAGGCTTCAG TTCCTCTCCA CATGAAACTT TCCTCATGCC ATGGAACTGG CTTCCCTCAG 000880
000881 AGTGAAAGAC CCAAGAGAGA GACTAAGACA GAAGCTGCAA TGTTTTTATG ACCTAGTCTT GGAAGTGACT TACTGTCATT 000960
000961 TCTACTGTAT TTTATTCATT AGAAGCAAGT CATTAAGTCC AGCCCACATT CAAAGTAAGA GGATTTAAGC TGAACCTCTT 001040
001041 GAAAAAATGG TATCAAAGTA TTTACGGACA TTTTAAAAAC TACCACAATA CATATAGGTG AACTTCACAA GGTGTAGACA 001120
001121 TGGGCTGAGA CGGAATATTG GATAATATCT CATTCTGCAA ACAGCAGCCT CATCTGTAAT AAAATCCCAG CATTCAGAAA 001200
001201 TTATCACGAT CAAGTAGGAA AAGGGCTTGT TGGAAAAAAC TTATCAAAGA TGTTACTTCA TTTATCCATT TATTCTGAGC 001280
001281 CATAGCATAA TAGCGACAAA TTGTGTGTCC TGTGTAATTT GGATACCTCT GCTCAATAAT AGCTGAACAG ATTTTATCCT 001360
001361 ATTTTTAGAA TAGTTAATAT ATACACATGG CACAAAATTT AAAAGGTATA AAAGTTTCTG GTTCAAAAAT AAGATTCCCT 001440
001441 CATTTTCTTT TTTTCTGATT CTTTGAATGC AGTTCGATTT ACTGATTTCT CATGTAGCCT TAGAAAGTAT TCTATGTACT 001520
001521 TACAAACATA TATGTACACA TATTTTTTCT TTCCCACAAA TAAAATACTG TATGCATTGT TAAAAAAAAA AAAAAA
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Predicted Small Protein

Name NONHSAT115085_smProtein_860:1027
Length 56
Molecular weight 6643.8282
Aromaticity 0.109090909091
Instability index 83.444
Isoelectric point 9.50555419922
Runs 9
Runs residual 0.0121212121212
Runs probability 0.0316296688846
Amino acid sequence MELASLRVKDPRERLRQKLQCFYDLVLEVTYCHFYCILFIRSKSLSPAHIQSKRI
Secondary structure LLLLLLLLLLHHHHHHHHHHHHHHHHLLEEELEEEEEEEEEELLLLHHHHLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooo