Difference between revisions of "NONHSAT115325"
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sequence = <dnaseq>AATGGAATGCTATCTCTAGAGTACTGAAAGAAACTAAAGGCCAACGTGTGAAAAACAATCTTCAGAAATGAACGTTAAATGATGACATTTTCAAACAAACAAGCAACAAAAAGAAGCAAAAAGTAAACAAAAAACAAAAATTCACATAATTTATTGCTAGGAGTTTTACACTGAAATGCTGAAGGGATTTCTACTAGCAAAAGTAAAAATGATCTCATTTGAAAAGATGGAAATTCAAGGAGGGAATGAAGAATACTGGATGGGTAAATGTGTTGGTAACTGTAAATGAATACTGACTACACAAAATTATGTTGAATAACTGAAAGATGAAAACACAATCACTTGAAGGAGAAATGTATGGTCAAACTGCATGCAGGAAAAACTTCTATAAAAGAGTTACTTCATGCTCTGGGTTGGCAGATACAATGAGCAGGAGTGCATCAGAAGTAATCAAGAAGGTGATTAGTTGGTGTACTTCAGCAGGAGCAACCAGATGAATTGGCTTCTCTATATCCCCGTATTAGCCACAAGCTAGGCAGCAGCCTGCAGGTGGGAGCAATGCCTATGCATGTATGGATCAGTGTGCTACATACAGTCACGTTGACAGCATGAACCTTCGATGTGATGTGAGGAAAATGGCATTCTACCTCTGTGTTCTTCCTCCCCAAAATTTGTAACCACCATCTAATCATGAGGAAAACATCATACAAGTCCAAATTGAGGAAGATTCTACAAAATGCCTGATTAATATTCATCGAAACTGTCAAGGTCATCAAAAGCAAGGAAAGTCTGAGAAACTGCCACAGCCTAAAGACAATCCAGGGAAACGTGATGACTCAGTGGTATTCGGGGTGGGTTTCTGGAACAGCAAAAGGACAACAGGTACCCTGAGCCACTATCTAAATTGTCTGCTTACCTTATGAAGACACCATAAGGAGGTATAACGTGTGGTGAGCACAGGTGAAGAGCTAGAGGCCTGAAACTAGATGGGGAGGGAGAAGCCAGCCATGCCTGCATCCAGGGCTGCACTCAGCCTCCCAGCATCTGTGCAGAGGCATCAGTCAAGCCACAGCTAACTGCAGTCCCAGCTAACATTATGTGGAACATCCCAGTCATCCCAGATCATCCCAGTCAACCAAGATCATAAAATTGTTTTCAGCTATTAAGTTTAAATATGTGAAATAAGGAGATAAAAATACTGACTTGGACTCTGTCTGAATGAAAGGATTAGTAGATTAGATTAGTGATTCTTAAAAGACTTTCTTGGATGCATATAAGTGTCCACAAAATAAGAGTATGATGGTTTCCAGGTACAAATAAGATGGAAAACTATTTTGTGAATCAGAATTAAATTGGTTTATTTACTGTAGAACTTCTAAGAGGCTTTAACATGTACATTTAATTATCATAAGCCTTATGAAAACTCCAGGAGGACAGAAGAGTTGCCTGTGACTTTTTTTAAAGTGTTTATTCACATCCCAAGGAAGGATTCCCAGAAGAGATGATGCCTAAGCAGTGTCCCAACCATGAAATAAAGTCTCCTAGCTACTGGACAAGATCATCTCGAAGCTTATTTCCAGCTCCAAATGTTATTATTTTCCTCAAACCCATTATAAAATGGCCTCTCTTAGCACTATGAGATCTGTAATACAAGAAGTAGAACAAACACATGAAGTTCCTGTTGGAAATTCAAACTTCTCATACAGCCTTCACTGAGTTCTACTCATTATGGATAAAGGCTTCTGCTTTGAGTCACCTAAGTACTTTTGACCCCCAACTTAATCAATGCCTTGAAGTGAAAATACAGTGTCAGGCAGTCCCTATTCATGACACAAACAAACCAACCAACTCATATCATGACTTAATGGTGTGAGACCTCAGTAAAAACTTTATATGAACT</dnaseq>| | sequence = <dnaseq>AATGGAATGCTATCTCTAGAGTACTGAAAGAAACTAAAGGCCAACGTGTGAAAAACAATCTTCAGAAATGAACGTTAAATGATGACATTTTCAAACAAACAAGCAACAAAAAGAAGCAAAAAGTAAACAAAAAACAAAAATTCACATAATTTATTGCTAGGAGTTTTACACTGAAATGCTGAAGGGATTTCTACTAGCAAAAGTAAAAATGATCTCATTTGAAAAGATGGAAATTCAAGGAGGGAATGAAGAATACTGGATGGGTAAATGTGTTGGTAACTGTAAATGAATACTGACTACACAAAATTATGTTGAATAACTGAAAGATGAAAACACAATCACTTGAAGGAGAAATGTATGGTCAAACTGCATGCAGGAAAAACTTCTATAAAAGAGTTACTTCATGCTCTGGGTTGGCAGATACAATGAGCAGGAGTGCATCAGAAGTAATCAAGAAGGTGATTAGTTGGTGTACTTCAGCAGGAGCAACCAGATGAATTGGCTTCTCTATATCCCCGTATTAGCCACAAGCTAGGCAGCAGCCTGCAGGTGGGAGCAATGCCTATGCATGTATGGATCAGTGTGCTACATACAGTCACGTTGACAGCATGAACCTTCGATGTGATGTGAGGAAAATGGCATTCTACCTCTGTGTTCTTCCTCCCCAAAATTTGTAACCACCATCTAATCATGAGGAAAACATCATACAAGTCCAAATTGAGGAAGATTCTACAAAATGCCTGATTAATATTCATCGAAACTGTCAAGGTCATCAAAAGCAAGGAAAGTCTGAGAAACTGCCACAGCCTAAAGACAATCCAGGGAAACGTGATGACTCAGTGGTATTCGGGGTGGGTTTCTGGAACAGCAAAAGGACAACAGGTACCCTGAGCCACTATCTAAATTGTCTGCTTACCTTATGAAGACACCATAAGGAGGTATAACGTGTGGTGAGCACAGGTGAAGAGCTAGAGGCCTGAAACTAGATGGGGAGGGAGAAGCCAGCCATGCCTGCATCCAGGGCTGCACTCAGCCTCCCAGCATCTGTGCAGAGGCATCAGTCAAGCCACAGCTAACTGCAGTCCCAGCTAACATTATGTGGAACATCCCAGTCATCCCAGATCATCCCAGTCAACCAAGATCATAAAATTGTTTTCAGCTATTAAGTTTAAATATGTGAAATAAGGAGATAAAAATACTGACTTGGACTCTGTCTGAATGAAAGGATTAGTAGATTAGATTAGTGATTCTTAAAAGACTTTCTTGGATGCATATAAGTGTCCACAAAATAAGAGTATGATGGTTTCCAGGTACAAATAAGATGGAAAACTATTTTGTGAATCAGAATTAAATTGGTTTATTTACTGTAGAACTTCTAAGAGGCTTTAACATGTACATTTAATTATCATAAGCCTTATGAAAACTCCAGGAGGACAGAAGAGTTGCCTGTGACTTTTTTTAAAGTGTTTATTCACATCCCAAGGAAGGATTCCCAGAAGAGATGATGCCTAAGCAGTGTCCCAACCATGAAATAAAGTCTCCTAGCTACTGGACAAGATCATCTCGAAGCTTATTTCCAGCTCCAAATGTTATTATTTTCCTCAAACCCATTATAAAATGGCCTCTCTTAGCACTATGAGATCTGTAATACAAGAAGTAGAACAAACACATGAAGTTCCTGTTGGAAATTCAAACTTCTCATACAGCCTTCACTGAGTTCTACTCATTATGGATAAAGGCTTCTGCTTTGAGTCACCTAAGTACTTTTGACCCCCAACTTAATCAATGCCTTGAAGTGAAAATACAGTGTCAGGCAGTCCCTATTCATGACACAAACAAACCAACCAACTCATATCATGACTTAATGGTGTGAGACCTCAGTAAAAACTTTATATGAACT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG045032]] | + | [[Category:Intergenic]][[Category:NONHSAG045032]][[Category:Transcripts]] |
Latest revision as of 02:03, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115325 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1900 nt |
Genomic location |
chr6-:143287558..143359214 |
Exon number |
3 |
Exons |
143287558..143288578,143342803..143343090,143358126..143359214 |
Genome context |
|
Sequence |
000001 AATGGAATGC TATCTCTAGA GTACTGAAAG AAACTAAAGG CCAACGTGTG AAAAACAATC TTCAGAAATG AACGTTAAAT 000080
000081 GATGACATTT TCAAACAAAC AAGCAACAAA AAGAAGCAAA AAGTAAACAA AAAACAAAAA TTCACATAAT TTATTGCTAG 000160 000161 GAGTTTTACA CTGAAATGCT GAAGGGATTT CTACTAGCAA AAGTAAAAAT GATCTCATTT GAAAAGATGG AAATTCAAGG 000240 000241 AGGGAATGAA GAATACTGGA TGGGTAAATG TGTTGGTAAC TGTAAATGAA TACTGACTAC ACAAAATTAT GTTGAATAAC 000320 000321 TGAAAGATGA AAACACAATC ACTTGAAGGA GAAATGTATG GTCAAACTGC ATGCAGGAAA AACTTCTATA AAAGAGTTAC 000400 000401 TTCATGCTCT GGGTTGGCAG ATACAATGAG CAGGAGTGCA TCAGAAGTAA TCAAGAAGGT GATTAGTTGG TGTACTTCAG 000480 000481 CAGGAGCAAC CAGATGAATT GGCTTCTCTA TATCCCCGTA TTAGCCACAA GCTAGGCAGC AGCCTGCAGG TGGGAGCAAT 000560 000561 GCCTATGCAT GTATGGATCA GTGTGCTACA TACAGTCACG TTGACAGCAT GAACCTTCGA TGTGATGTGA GGAAAATGGC 000640 000641 ATTCTACCTC TGTGTTCTTC CTCCCCAAAA TTTGTAACCA CCATCTAATC ATGAGGAAAA CATCATACAA GTCCAAATTG 000720 000721 AGGAAGATTC TACAAAATGC CTGATTAATA TTCATCGAAA CTGTCAAGGT CATCAAAAGC AAGGAAAGTC TGAGAAACTG 000800 000801 CCACAGCCTA AAGACAATCC AGGGAAACGT GATGACTCAG TGGTATTCGG GGTGGGTTTC TGGAACAGCA AAAGGACAAC 000880 000881 AGGTACCCTG AGCCACTATC TAAATTGTCT GCTTACCTTA TGAAGACACC ATAAGGAGGT ATAACGTGTG GTGAGCACAG 000960 000961 GTGAAGAGCT AGAGGCCTGA AACTAGATGG GGAGGGAGAA GCCAGCCATG CCTGCATCCA GGGCTGCACT CAGCCTCCCA 001040 001041 GCATCTGTGC AGAGGCATCA GTCAAGCCAC AGCTAACTGC AGTCCCAGCT AACATTATGT GGAACATCCC AGTCATCCCA 001120 001121 GATCATCCCA GTCAACCAAG ATCATAAAAT TGTTTTCAGC TATTAAGTTT AAATATGTGA AATAAGGAGA TAAAAATACT 001200 001201 GACTTGGACT CTGTCTGAAT GAAAGGATTA GTAGATTAGA TTAGTGATTC TTAAAAGACT TTCTTGGATG CATATAAGTG 001280 001281 TCCACAAAAT AAGAGTATGA TGGTTTCCAG GTACAAATAA GATGGAAAAC TATTTTGTGA ATCAGAATTA AATTGGTTTA 001360 001361 TTTACTGTAG AACTTCTAAG AGGCTTTAAC ATGTACATTT AATTATCATA AGCCTTATGA AAACTCCAGG AGGACAGAAG 001440 001441 AGTTGCCTGT GACTTTTTTT AAAGTGTTTA TTCACATCCC AAGGAAGGAT TCCCAGAAGA GATGATGCCT AAGCAGTGTC 001520 001521 CCAACCATGA AATAAAGTCT CCTAGCTACT GGACAAGATC ATCTCGAAGC TTATTTCCAG CTCCAAATGT TATTATTTTC 001600 001601 CTCAAACCCA TTATAAAATG GCCTCTCTTA GCACTATGAG ATCTGTAATA CAAGAAGTAG AACAAACACA TGAAGTTCCT 001680 001681 GTTGGAAATT CAAACTTCTC ATACAGCCTT CACTGAGTTC TACTCATTAT GGATAAAGGC TTCTGCTTTG AGTCACCTAA 001760 001761 GTACTTTTGA CCCCCAACTT AATCAATGCC TTGAAGTGAA AATACAGTGT CAGGCAGTCC CTATTCATGA CACAAACAAA 001840 001841 CCAACCAACT CATATCATGA CTTAATGGTG TGAGACCTCA GTAAAAACTT TATATGAACT |
Predicted Small Protein
Name | NONHSAT115325_smProtein_326:496 |
Length | 57 |
Molecular weight | 6156.0167 |
Aromaticity | 0.0714285714286 |
Instability index | 58.4430357143 |
Isoelectric point | 9.50701904297 |
Runs | 11 |
Runs residual | 0.0431303669009 |
Runs probability | 0.0496459025871 |
Amino acid sequence | MKTQSLEGEMYGQTACRKNFYKRVTSCSGLADTMSRSASEVIKKVISWCTSAGATR |
Secondary structure | LLLLLLLEEEELEELLLLLEEEEEELLLHHHHHHLLLHHHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |