Difference between revisions of "NONHSAT136158"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
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sequence = <dnaseq>GTGCAGTGGCACATGCCTGTAGTCCCAGCTACTCCAGAGACTGAGTTGGGAGGATGGTTGGGGCCTAGGAGGCAGAGGTTGCTGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGGGAGACCCTGTAAAAAAAAAAATACAGAGAGAGAGAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAAAGCAAGAAAGAAAATATAAAATTATAGACCAATATGGCTCTTGAATTATTTGTTTTAGTCTTTTGCAACCAGGGTTATCTTGGCTTGTTTATGATGAAATCATTTTTCACAAAGTCTAAAGAATGTTGGTTGTCAAAATATACGGTTTCTGTGGTGCCCCATATCTGCCCCATTTCTCTGCGCCTGCGGTCTGGTTACTCCCTTATGAAAGTGCATAGAATCCCCTCTTCCCTGTTCCCCACTTTGCGAGAGATCTATTGGGAGCTAGTGGGAGTTTTTCATTTTTAACACTGGGCATTTCTATAAATTCATATTTCTGCATCTCCTTATTTTGTTAGGGAGTGATGTATGGTCCATCCTCATCATTTATGAATTCTGTAGTTGCAAATTTGCCTGCCAGACGACATTTATTTTTTTTTCTCCCCCATCAATGCTGGTGGTGCTTTTGCAGTCAGTTATGGACATGAACAGAGCGGTCAGAAATTTGAGTCTCCTGATACGAAGTTGCCCATCTGAGGTTAAACAAGGCAA</dnaseq>|
 
sequence = <dnaseq>GTGCAGTGGCACATGCCTGTAGTCCCAGCTACTCCAGAGACTGAGTTGGGAGGATGGTTGGGGCCTAGGAGGCAGAGGTTGCTGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGGGAGACCCTGTAAAAAAAAAAATACAGAGAGAGAGAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAAAGCAAGAAAGAAAATATAAAATTATAGACCAATATGGCTCTTGAATTATTTGTTTTAGTCTTTTGCAACCAGGGTTATCTTGGCTTGTTTATGATGAAATCATTTTTCACAAAGTCTAAAGAATGTTGGTTGTCAAAATATACGGTTTCTGTGGTGCCCCATATCTGCCCCATTTCTCTGCGCCTGCGGTCTGGTTACTCCCTTATGAAAGTGCATAGAATCCCCTCTTCCCTGTTCCCCACTTTGCGAGAGATCTATTGGGAGCTAGTGGGAGTTTTTCATTTTTAACACTGGGCATTTCTATAAATTCATATTTCTGCATCTCCTTATTTTGTTAGGGAGTGATGTATGGTCCATCCTCATCATTTATGAATTCTGTAGTTGCAAATTTGCCTGCCAGACGACATTTATTTTTTTTTCTCCCCCATCAATGCTGGTGGTGCTTTTGCAGTCAGTTATGGACATGAACAGAGCGGTCAGAAATTTGAGTCTCCTGATACGAAGTTGCCCATCTGAGGTTAAACAAGGCAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:Transcripts]]

Latest revision as of 02:39, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT136158

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

860 nt

Genomic location

chrX-:5581462..5654346

Exon number

3

Exons

5581462..5581744,5597447..5597647,5653971..5654346

Genome context

Sequence
000001 GTGCAGTGGC ACATGCCTGT AGTCCCAGCT ACTCCAGAGA CTGAGTTGGG AGGATGGTTG GGGCCTAGGA GGCAGAGGTT 000080
000081 GCTGTGAGCC AAGATTGCAC CACTGCACTC CAGCCTGGGT GACAGAGGGA GACCCTGTAA AAAAAAAAAT ACAGAGAGAG 000160
000161 AGAGAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGGAAAG 000240
000241 AAAGAAAGAA AGAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAG AAAGAAAGAA AGAAAGAAAG 000320
000321 AAAGAAGAAA GCAAGAAAGA AAATATAAAA TTATAGACCA ATATGGCTCT TGAATTATTT GTTTTAGTCT TTTGCAACCA 000400
000401 GGGTTATCTT GGCTTGTTTA TGATGAAATC ATTTTTCACA AAGTCTAAAG AATGTTGGTT GTCAAAATAT ACGGTTTCTG 000480
000481 TGGTGCCCCA TATCTGCCCC ATTTCTCTGC GCCTGCGGTC TGGTTACTCC CTTATGAAAG TGCATAGAAT CCCCTCTTCC 000560
000561 CTGTTCCCCA CTTTGCGAGA GATCTATTGG GAGCTAGTGG GAGTTTTTCA TTTTTAACAC TGGGCATTTC TATAAATTCA 000640
000641 TATTTCTGCA TCTCCTTATT TTGTTAGGGA GTGATGTATG GTCCATCCTC ATCATTTATG AATTCTGTAG TTGCAAATTT 000720
000721 GCCTGCCAGA CGACATTTAT TTTTTTTTCT CCCCCATCAA TGCTGGTGGT GCTTTTGCAG TCAGTTATGG ACATGAACAG 000800
000801 AGCGGTCAGA AATTTGAGTC TCCTGATACG AAGTTGCCCA TCTGAGGTTA AACAAGGCAA
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Predicted Small Protein

Name NONHSAT136158_smProtein_362:616
Length 85
Molecular weight 9868.7619
Aromaticity 0.166666666667
Instability index 42.8607142857
Isoelectric point 9.40887451172
Runs 15
Runs residual 0.0445859872611
Runs probability 0.0456750868515
Amino acid sequence MALELFVLVFCNQGYLGLFMMKSFFTKSKECWLSKYTVSVVPHICPISLRLRSGYSLMKV
HRIPSSLFPTLREIYWELVGVFHF
Secondary structure LLEEEEEEEEELLLHHHHHHHHHHLLLLLEEEEEEEEEEEELLEEELEEEELLLLEEEEE
EELLLLLLHHHHHHHHHHHHHHLL
PRMN -
PiMo -