Difference between revisions of "NONHSAT136384"

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sequence = <dnaseq>GAGGCCATTGCATGTGATTGGACTGACCTCTTCCTGTGGTGACTAGAAAGTGCTAAAAGAATATTCTTTAGTATTTTCTCTCATACTAAGGGGTTAATATGGAATGTGTTTGAAATTGCAAATTGAATAATTGTCCAGGTTTTTTTTTTATACCTTGCTAAATTAGTTCCTCTTTTAATCTAGTGATAGATACAGTGATGCCAGTGATGACAGCTTTTCAGAGCCAAGGATAGCTGAGTTGGAAATAAGCTGAAATGAATACATGACTGGGAATAATGGGGACTGCCTGTGAGGCCTCTGAAATAATTGAAGGCAAGATGAAGGAACTATCTGAAGAAATCACTACACTCTTAGAGAATCCCTCTGTTCTCCAGCAAACATGGGATGTAAAGCCTCACAGGGAATCTGATAATACATACTTCTGTCAACCAGAACCAGAGGGGTAGTTTTCTTTTCCCTCCAGAGGCAGCCTTTGGTACTTAAAATATCTGTAGCTGATTAAATTTTTCCCAACAACCTCA</dnaseq>|
 
sequence = <dnaseq>GAGGCCATTGCATGTGATTGGACTGACCTCTTCCTGTGGTGACTAGAAAGTGCTAAAAGAATATTCTTTAGTATTTTCTCTCATACTAAGGGGTTAATATGGAATGTGTTTGAAATTGCAAATTGAATAATTGTCCAGGTTTTTTTTTTATACCTTGCTAAATTAGTTCCTCTTTTAATCTAGTGATAGATACAGTGATGCCAGTGATGACAGCTTTTCAGAGCCAAGGATAGCTGAGTTGGAAATAAGCTGAAATGAATACATGACTGGGAATAATGGGGACTGCCTGTGAGGCCTCTGAAATAATTGAAGGCAAGATGAAGGAACTATCTGAAGAAATCACTACACTCTTAGAGAATCCCTCTGTTCTCCAGCAAACATGGGATGTAAAGCCTCACAGGGAATCTGATAATACATACTTCTGTCAACCAGAACCAGAGGGGTAGTTTTCTTTTCCCTCCAGAGGCAGCCTTTGGTACTTAAAATATCTGTAGCTGATTAAATTTTTCCCAACAACCTCA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG054095]]
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[[Category:Sense]][[Category:NONHSAG054095]][[Category:Transcripts]]

Latest revision as of 02:40, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT136384

Source

NONCODE4.0

Same with

,

Classification

sense

Length

521 nt

Genomic location

chrX-:16607672..16609168

Exon number

2

Exons

16607672..16607898,16608875..16609168

Genome context

Sequence
000001 GAGGCCATTG CATGTGATTG GACTGACCTC TTCCTGTGGT GACTAGAAAG TGCTAAAAGA ATATTCTTTA GTATTTTCTC 000080
000081 TCATACTAAG GGGTTAATAT GGAATGTGTT TGAAATTGCA AATTGAATAA TTGTCCAGGT TTTTTTTTTA TACCTTGCTA 000160
000161 AATTAGTTCC TCTTTTAATC TAGTGATAGA TACAGTGATG CCAGTGATGA CAGCTTTTCA GAGCCAAGGA TAGCTGAGTT 000240
000241 GGAAATAAGC TGAAATGAAT ACATGACTGG GAATAATGGG GACTGCCTGT GAGGCCTCTG AAATAATTGA AGGCAAGATG 000320
000321 AAGGAACTAT CTGAAGAAAT CACTACACTC TTAGAGAATC CCTCTGTTCT CCAGCAAACA TGGGATGTAA AGCCTCACAG 000400
000401 GGAATCTGAT AATACATACT TCTGTCAACC AGAACCAGAG GGGTAGTTTT CTTTTCCCTC CAGAGGCAGC CTTTGGTACT 000480
000481 TAAAATATCT GTAGCTGATT AAATTTTTCC CAACAACCTC A
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Predicted Small Protein

Name NONHSAT136384_smProtein_275:445
Length 57
Molecular weight 6340.9639
Aromaticity 0.0535714285714
Instability index 69.1857142857
Isoelectric point 4.25738525391
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0476064299593
Amino acid sequence MGTACEASEIIEGKMKELSEEITTLLENPSVLQQTWDVKPHRESDNTYFCQPEPEG
Secondary structure LLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEEEEELLLLLLLLLEEELLLLLL
PRMN -
PiMo -