Difference between revisions of "NONHSAT136526"
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sequence = <dnaseq>GGAAGCTGGACTTGTGAGGATGGAAGGGATCTGAGAAGACCGGAAGAACAATGGTGAAGTAAAGTAGAAAAAGTGAGAACACTGGGTGGTCCAGTCTGATGGAGATTCATCTGGATGCAAAATGTGAAGACAAGCCTTCAGTTCCCTTCTTGACCACCAGCATGGAACTAAACAATTAAACCTGTCAGAAAAAAAAAAGCTGCTGTATTTTAAGTGCAAGAAACAAAGTCATGCTAGAATGTACAGGGTAACAGAGACATGGACTTTTTAAGGTAACagagacatggacttgagaagacaacttggctcaattcctagctctgcaacttacttactaggtttgtgtctttggGACTGCATCCTAACAAACAACTGTGTCAAGACATTTgaacagcatattctacacaaataaaaaggaaatgataaagataaaagaaattaatagaatggaaagtgatggagataaacaagtgaaaagatggtcctttgaaaagactaaaacatggccaatgcactggcaagaatgatTGGGACAATAAACAAAATATATATGCCAGGgcagctcccggcgagatcgacgcaaaagggaaccgacctttgatcatccgcacgtgagactgctcccagaaagggggaacaatgttaattacccacagactacgttggatccaggctttcggcattatgtctgtactaaataaaagcaagcgctgcagcttattaaaactgctcactctttggcagtcccctagctgctcttacactgcaccagggtctgcgggacggacctggcaGCtggtgccctgtgtgaggatcactgcaacggatcgtgacagaaccctcaaaaatgaagg</dnaseq>| | sequence = <dnaseq>GGAAGCTGGACTTGTGAGGATGGAAGGGATCTGAGAAGACCGGAAGAACAATGGTGAAGTAAAGTAGAAAAAGTGAGAACACTGGGTGGTCCAGTCTGATGGAGATTCATCTGGATGCAAAATGTGAAGACAAGCCTTCAGTTCCCTTCTTGACCACCAGCATGGAACTAAACAATTAAACCTGTCAGAAAAAAAAAAGCTGCTGTATTTTAAGTGCAAGAAACAAAGTCATGCTAGAATGTACAGGGTAACAGAGACATGGACTTTTTAAGGTAACagagacatggacttgagaagacaacttggctcaattcctagctctgcaacttacttactaggtttgtgtctttggGACTGCATCCTAACAAACAACTGTGTCAAGACATTTgaacagcatattctacacaaataaaaaggaaatgataaagataaaagaaattaatagaatggaaagtgatggagataaacaagtgaaaagatggtcctttgaaaagactaaaacatggccaatgcactggcaagaatgatTGGGACAATAAACAAAATATATATGCCAGGgcagctcccggcgagatcgacgcaaaagggaaccgacctttgatcatccgcacgtgagactgctcccagaaagggggaacaatgttaattacccacagactacgttggatccaggctttcggcattatgtctgtactaaataaaagcaagcgctgcagcttattaaaactgctcactctttggcagtcccctagctgctcttacactgcaccagggtctgcgggacggacctggcaGCtggtgccctgtgtgaggatcactgcaacggatcgtgacagaaccctcaaaaatgaagg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG054175]] | + | [[Category:Intergenic]][[Category:NONHSAG054175]][[Category:Transcripts]] |
Latest revision as of 02:41, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT136526 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
854 nt |
| Genomic location |
chrX+:25893965..25911784 |
| Exon number |
7 |
| Exons |
25893965..25894081,25896147..25896243,25896455..25896486,25898881..25898986,25900190..25900423,25911480..25911661,25911699..25911784 |
| Genome context |
|
| Sequence |
000001 GGAAGCTGGA CTTGTGAGGA TGGAAGGGAT CTGAGAAGAC CGGAAGAACA ATGGTGAAGT AAAGTAGAAA AAGTGAGAAC 000080
000081 ACTGGGTGGT CCAGTCTGAT GGAGATTCAT CTGGATGCAA AATGTGAAGA CAAGCCTTCA GTTCCCTTCT TGACCACCAG 000160 000161 CATGGAACTA AACAATTAAA CCTGTCAGAA AAAAAAAAGC TGCTGTATTT TAAGTGCAAG AAACAAAGTC ATGCTAGAAT 000240 000241 GTACAGGGTA ACAGAGACAT GGACTTTTTA AGGTAACaga gacatggact tgagaagaca acttggctca attcctagct 000320 000321 ctgcaactta cttactaggt ttgtgtcttt ggGACTGCAT CCTAACAAAC AACTGTGTCA AGACATTTga acagcatatt 000400 000401 ctacacaaat aaaaaggaaa tgataaagat aaaagaaatt aatagaatgg aaagtgatgg agataaacaa gtgaaaagat 000480 000481 ggtcctttga aaagactaaa acatggccaa tgcactggca agaatgatTG GGACAATAAA CAAAATATAT ATGCCAGGgc 000560 000561 agctcccggc gagatcgacg caaaagggaa ccgacctttg atcatccgca cgtgagactg ctcccagaaa gggggaacaa 000640 000641 tgttaattac ccacagacta cgttggatcc aggctttcgg cattatgtct gtactaaata aaagcaagcg ctgcagctta 000720 000721 ttaaaactgc tcactctttg gcagtcccct agctgctctt acactgcacc agggtctgcg ggacggacct ggcaGCtggt 000800 000801 gccctgtgtg aggatcactg caacggatcg tgacagaacc ctcaaaaatg aagg |
Predicted Small Protein
| Name | NONHSAT136526_smProtein_419:526 |
| Length | 36 |
| Molecular weight | 4422.0758 |
| Aromaticity | 0.114285714286 |
| Instability index | 55.0714285714 |
| Isoelectric point | 9.30181884766 |
| Runs | 7 |
| Runs residual | 0.0188861985472 |
| Runs probability | 0.0430009841774 |
| Amino acid sequence | MIKIKEINRMESDGDKQVKRWSFEKTKTWPMHWQE |
| Secondary structure | LEEEEEELLLLLLLLLEEEEHHHEELLLLLLLLLL |
| PRMN | - |
| PiMo | - |
