Difference between revisions of "NONHSAT137105"
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sequence = <dnaseq>ATGAACGGAGACGACGCCTTTGCAAAGAGACCCAGGGATGATGATAAAGCATCAGAGAAGAGAAGCAAGGCCTTCAATGATATTGCCACATACTTCTCTAAGAAAGAGTGGGAAAAGATGAAATACTCGGAGAAAATCAGCTATGTGTATATGAAGAGAAACTATGAGGCCATGACTAAACTAGCTAGGTTTCAATGTCACCCTCCCACCTTTCATGTGTAATAAACAGGCCACAGACTTCCAGGGGAATTATTTTGATAATGACCGTAACCGCAGGATTCAGGGTGTTGAACGTCCTCAGATGACTTTTGGCAGGCTCCAGAGAATCATCCCGAAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCCCACAGAACGATGGGAAACAGCTGCGCCGCCCCGGGAAAAGCAAATACTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAGACATGCCTGGACCCACAGACTGCGTGAGAGAAACCAGCTGGTGATTTATGAAGAGATCAGAGACCCTGAGGAAGATGATGAGTAACTCC</dnaseq>| | sequence = <dnaseq>ATGAACGGAGACGACGCCTTTGCAAAGAGACCCAGGGATGATGATAAAGCATCAGAGAAGAGAAGCAAGGCCTTCAATGATATTGCCACATACTTCTCTAAGAAAGAGTGGGAAAAGATGAAATACTCGGAGAAAATCAGCTATGTGTATATGAAGAGAAACTATGAGGCCATGACTAAACTAGCTAGGTTTCAATGTCACCCTCCCACCTTTCATGTGTAATAAACAGGCCACAGACTTCCAGGGGAATTATTTTGATAATGACCGTAACCGCAGGATTCAGGGTGTTGAACGTCCTCAGATGACTTTTGGCAGGCTCCAGAGAATCATCCCGAAGATCATGCCCAAGAAGCCAGCAGAGGAAGGAAATGATTCGAAGGGAGTGTCAGAAGCATCTGGCCCACAGAACGATGGGAAACAGCTGCGCCGCCCCGGGAAAAGCAAATACTTCTGAGAAGATTAATAAGAGATCTGGACCCAAAAGGGGGAGACATGCCTGGACCCACAGACTGCGTGAGAGAAACCAGCTGGTGATTTATGAAGAGATCAGAGACCCTGAGGAAGATGATGAGTAACTCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG054522]] | + | [[Category:Intergenic]][[Category:NONHSAG054522]][[Category:Transcripts]] |
Latest revision as of 02:43, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT137105 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
579 nt |
| Genomic location |
chrX+:52654048..52661945 |
| Exon number |
6 |
| Exons |
52654048..52654116,52654552..52654666,52655338..52655440,52657298..52657347,52659321..52659457,52661841..52661945 |
| Genome context |
|
| Sequence |
000001 ATGAACGGAG ACGACGCCTT TGCAAAGAGA CCCAGGGATG ATGATAAAGC ATCAGAGAAG AGAAGCAAGG CCTTCAATGA 000080
000081 TATTGCCACA TACTTCTCTA AGAAAGAGTG GGAAAAGATG AAATACTCGG AGAAAATCAG CTATGTGTAT ATGAAGAGAA 000160 000161 ACTATGAGGC CATGACTAAA CTAGCTAGGT TTCAATGTCA CCCTCCCACC TTTCATGTGT AATAAACAGG CCACAGACTT 000240 000241 CCAGGGGAAT TATTTTGATA ATGACCGTAA CCGCAGGATT CAGGGTGTTG AACGTCCTCA GATGACTTTT GGCAGGCTCC 000320 000321 AGAGAATCAT CCCGAAGATC ATGCCCAAGA AGCCAGCAGA GGAAGGAAAT GATTCGAAGG GAGTGTCAGA AGCATCTGGC 000400 000401 CCACAGAACG ATGGGAAACA GCTGCGCCGC CCCGGGAAAA GCAAATACTT CTGAGAAGAT TAATAAGAGA TCTGGACCCA 000480 000481 AAAGGGGGAG ACATGCCTGG ACCCACAGAC TGCGTGAGAG AAACCAGCTG GTGATTTATG AAGAGATCAG AGACCCTGAG 000560 000561 GAAGATGATG AGTAACTCC |
Predicted Small Protein
| Name | NONHSAT137105_smProtein_368:574 |
| Length | 69 |
| Molecular weight | 8008.913 |
| Aromaticity | 0.0294117647059 |
| Instability index | 66.9897058824 |
| Isoelectric point | 9.50347900391 |
| Runs | 10 |
| Runs residual | 0.00655802861685 |
| Runs probability | 0.0394011658717 |
| Amino acid sequence | MIRRECQKHLAHRTMGNSCAAPGKANTSEKINKRSGPKRGRHAWTHRLRERNQLVIYEEI RDPEEDDE |
| Secondary structure | LLHHHHHHHHHHLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLEEHHHHLLEEEEEEE LLLLLLLL |
| PRMN | - |
| PiMo | - |
