Difference between revisions of "NONHSAT138158"

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sequence = <dnaseq>TCCTGGAACATAGCCAGTCTACTTGCAGTGAAACAATAATCATTCAAACACAGCCTCTCAAGGATGGAAAATGGATAACTGTCCCATATTCAAACAGCTGTAATATGATAGATTAAAGTGGGCTAACCACAAGCTGGGTGAACAGAAATTTTTTTTTTTTTTTAGTATCACTCTGTTGCACAAGCTGGAGTGCAGCGGCACGATCTCGGCTCACTACAACCTCCAACTCCCGGGTTCAAGCAATTCTCATGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCACGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCACTATGTTGGCCAGGCCGGTCTTGAACTCCTGACCACTTGATCCGCCTGCCTGGGCCTCCCAAAGTTCTGAGATTACAGACGTGACCCACTGCACTGGCCAGAAAAATTCTATATATGTGTTGAGTCATGACTTCAAAACACAGACTGCAGTTGCTGGGGAAAATTGCAACAGACAGAAAGAATACAAGGTGTGCCATACAACGGACAGAAAGAATACAAGGACTAGGGCTGCTCATTCTAAGAAAGAGCATTAAAAGGCCTGGATACTCTCAAAGAGCTTTCAGCTGAACAGAAGGAGGACAATGCAAGGCCACATTTGGCGCCATCTAGTGCTTAATGAGTGCCATCTTGGATGGCCCCCAAAAGCAAAGAGTCAAGGGCTCCAGCGTGATATTTTAAAAGTTTCTCTGACCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCCAGCCCATCCTGGCTAACACGGTGAAACCCCGTCT</dnaseq>|
 
sequence = <dnaseq>TCCTGGAACATAGCCAGTCTACTTGCAGTGAAACAATAATCATTCAAACACAGCCTCTCAAGGATGGAAAATGGATAACTGTCCCATATTCAAACAGCTGTAATATGATAGATTAAAGTGGGCTAACCACAAGCTGGGTGAACAGAAATTTTTTTTTTTTTTTAGTATCACTCTGTTGCACAAGCTGGAGTGCAGCGGCACGATCTCGGCTCACTACAACCTCCAACTCCCGGGTTCAAGCAATTCTCATGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCACGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCACTATGTTGGCCAGGCCGGTCTTGAACTCCTGACCACTTGATCCGCCTGCCTGGGCCTCCCAAAGTTCTGAGATTACAGACGTGACCCACTGCACTGGCCAGAAAAATTCTATATATGTGTTGAGTCATGACTTCAAAACACAGACTGCAGTTGCTGGGGAAAATTGCAACAGACAGAAAGAATACAAGGTGTGCCATACAACGGACAGAAAGAATACAAGGACTAGGGCTGCTCATTCTAAGAAAGAGCATTAAAAGGCCTGGATACTCTCAAAGAGCTTTCAGCTGAACAGAAGGAGGACAATGCAAGGCCACATTTGGCGCCATCTAGTGCTTAATGAGTGCCATCTTGGATGGCCCCCAAAAGCAAAGAGTCAAGGGCTCCAGCGTGATATTTTAAAAGTTTCTCTGACCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCCAGCCCATCCTGGCTAACACGGTGAAACCCCGTCT</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG055096]]
+
[[Category:Intergenic]][[Category:NONHSAG055096]][[Category:Transcripts]]

Latest revision as of 02:48, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT138158

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

863 nt

Genomic location

chrX+:109085564..109158741

Exon number

2

Exons

109085564..109086189,109158505..109158741

Genome context

Sequence
000001 TCCTGGAACA TAGCCAGTCT ACTTGCAGTG AAACAATAAT CATTCAAACA CAGCCTCTCA AGGATGGAAA ATGGATAACT 000080
000081 GTCCCATATT CAAACAGCTG TAATATGATA GATTAAAGTG GGCTAACCAC AAGCTGGGTG AACAGAAATT TTTTTTTTTT 000160
000161 TTTAGTATCA CTCTGTTGCA CAAGCTGGAG TGCAGCGGCA CGATCTCGGC TCACTACAAC CTCCAACTCC CGGGTTCAAG 000240
000241 CAATTCTCAT GCCTCAGCCT CCGGAGTAGC TGGGACTACA GGCACGTGCC ACCATGCCCG GCTAATTTTT GTATTTTTAG 000320
000321 TGGAGATGGG GTTTCACTAT GTTGGCCAGG CCGGTCTTGA ACTCCTGACC ACTTGATCCG CCTGCCTGGG CCTCCCAAAG 000400
000401 TTCTGAGATT ACAGACGTGA CCCACTGCAC TGGCCAGAAA AATTCTATAT ATGTGTTGAG TCATGACTTC AAAACACAGA 000480
000481 CTGCAGTTGC TGGGGAAAAT TGCAACAGAC AGAAAGAATA CAAGGTGTGC CATACAACGG ACAGAAAGAA TACAAGGACT 000560
000561 AGGGCTGCTC ATTCTAAGAA AGAGCATTAA AAGGCCTGGA TACTCTCAAA GAGCTTTCAG CTGAACAGAA GGAGGACAAT 000640
000641 GCAAGGCCAC ATTTGGCGCC ATCTAGTGCT TAATGAGTGC CATCTTGGAT GGCCCCCAAA AGCAAAGAGT CAAGGGCTCC 000720
000721 AGCGTGATAT TTTAAAAGTT TCTCTGACCT GGCCGGGCGC GGTGGCTCAC GCCTGTAATC CCGGCACTTT GGGAGGCCGA 000800
000801 GGCGGGTGGA TCACGAGGTC AGGAGATCCA GCCCATCCTG GCTAACACGG TGAAACCCCG TCT
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Predicted Small Protein

Name NONHSAT138158_smProtein_638:844
Length 69
Molecular weight 7326.3321
Aromaticity 0.0588235294118
Instability index 53.8029411765
Isoelectric point 9.84014892578
Runs 10
Runs residual 0.00655802861685
Runs probability 0.0467938526762
Amino acid sequence MQGHIWRHLVLNECHLGWPPKAKSQGLQRDILKVSLTWPGAVAHACNPGTLGGRGGWITR
SGDPAHPG
Secondary structure LLLEEEEEEEELLLLLLLLLLLLLLLLHHHEEEEEELLLLLEEELLLLLLLLLLLLEEEL
LLLLLLLL
PRMN -
PiMo -