Difference between revisions of "NONHSAT140540"
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sequence = <dnaseq>ATCTCAGAATGAAGGCATGGCTGGGGTCTGGCTGTCTCCTGGTGGCCGGAAGGAGACAGACGGCAAAGGAGAAGCTGCCTGTCTCTGCACAGGTCCATGTCCCTGAGGAAAGCCAACGTCACAGAGAAATGATGACCACTTTCTCAAACCTGGCTTCGGATTTGCACGTTGGCTGCCAAAGCTGATCAGCAGCGGGCTTTGTGAAGATGCCTGGTCTACCACGTGCCTCCAGCTGGTCACGCCCAAGACTCCCTGAGCCCTCTGGAAGGGCAGCACTTGCCCAGTGCCTCCCTCCAGGTCCTGCCACATCCAAGAACCACCTGGACTATTATTTACTTAGTATTTTAAACCAATGTACTTTTTAAACTCCAATTTTTTAATAAGATCATTTATGTCACCATATAACACCCAAAGCAGTAGAATTTGTCATACACAGAAGGCAATGCTAAAAATACAATGAAAATGGAACCAGGAAGTCTAGCTTGATACCCTTGGCCTGTATAACTGAGCCTTGTGCCAGTTAAAAGGGCAAAGCAGTAGGTGCTCAGGGGGTGTCGGGGCCCTGAAAGCTGATCTGATCCGCTGCTGCGTATTCACTACCGCCCTGGGACGCCTCCAGCAGACCACCTCACTGGGGGAAACATCAGGACAGCGTGGCCAGGAGCCCAATGCTGCCACCTCATAGATGGGTATCTGAGATGAGTCATCGAACTTCTGCAAGCCTCAGTTTCCTCCCTGGTCTAATGGAACCCTCCTTGGCGGCTTCACAGGGTGATGCTTGGGGCAGGTGATGGAGATGTGGGAGAGGCAGTTATTTTTAACCACCCAGCCAAGCCCCTTGCCAGGAGGGACTCCCAGAAATGAAGCCTTACCCTTGAGGGAGTTCCCCGCCACTCCAAGCTTGGGGCCTGGGATGGCAGCTGTGAGGGCACCAGCACCATCTGGGGACTCGCTGGGTACCAATTATCACCGCCCTTGGGCTACTTCAAAGGCTGCCCACACAGACACACCCTCCTTGGTAACCAGTCCTCAGGAGGAAGGGCACCCAAGGAAAGGGGGAAGGCTTCCTGGGCTAGAGCCCCTTCAGGGTCTGACACGCCATTGACACTGACCACGTCATTCATTAAGCAAGCACCAACTATACATCATTCACTATCCCAATCTAATTTGCACAAGCCCTTAGGCAGGTGCTACTATTATCCCTGTTTTACAGAGAAGGAAACCGAGGCTTAGGAGATGAAGTCTGAGGTGTTGGTGGAGCTGGGATTTAAACCAAAATATGTCCAACTGCAAAGCATGTAAGTAACAATTTTAGAGGGTATACGGAGGTGACCCTAAGTAACAAGGAATCACATATAGTGAGCAAGCAATTTGCTTTTCAGTTTTTGGTCAATCCTTATGATTATTTAGAGGAGAAAGTTCAGTTTGGTGCTGGTATATCTTATGTTTATCACCCGACAGTTGTTAATCTCTTTTTAACAAAGAATACAGGCCAAGGCCCTGTGACTTTAGCTGGCTTTGGTATTTGGCCAAAAGTTAATGACTTTGGCAGTTAGTGTTTTTATCCATGCCAAGCGATGATGATTTTCTCTTTAGTGACAGACATTTTTTAAAAAATAAATTCACATAAAAAAGTAGTTTTACAGATGAAGCACTAAAACTAGTGCATTTCATCTTAAACTGCAAATTATAAAGGGAATAATAGTAACTTGACAGTGGAGAGACCTGGCAGACACCACCTTCACCAACTGATCAAAGTTAACATCGCCAGAAAGGGGACAGATGGCATGTGCCTCTCGATAAGATGCACTGAAGACACACACTCACTTCTGCAATATTCCTGCCAAGAATGCCTCATCTGAATCTAATCTCGAGTATAACCATCAGACAAACCCAAATTGAGAGACAGTTTACAAAACACCAGCCTTGTACTCTGCTTAATATGTCAATGTCACAAGAGAGAAAGACAGACTGAAGAGCTGATCCAGACTGAAGAAGGCTCGAGATTAATGCAAAAGCTGATCTGGGATTGCATCTTGGACCTCAACTCTCCCCTTTTTATTGTTAAGGGACACTACTGGGACAATTTTTTTTTTTTTTTCGTTTTGAGACAGGGTCTCGCTCAGTCACCCAGGCTGGAGTGCAGTGGTGGAATAATAACTCACTGCAGCCTTGAACTCCCGGACTCAAGCAATCCTCCTGCCTGAGCCTTCCGAGTAACTGGGACTATGGGCGTGTACCACAACACCTCGCTATTTTTTTTTTCCTACTTTTTGTAGAGACGGGGTCTCACTATGTTGCCCAGGCTGGTTTCAAACTCAAGTGATCCTTCCACCTCAGCCTCTATAAAATTTGAATAAAGTTGTAGATGAAATTGGT</dnaseq>| | sequence = <dnaseq>ATCTCAGAATGAAGGCATGGCTGGGGTCTGGCTGTCTCCTGGTGGCCGGAAGGAGACAGACGGCAAAGGAGAAGCTGCCTGTCTCTGCACAGGTCCATGTCCCTGAGGAAAGCCAACGTCACAGAGAAATGATGACCACTTTCTCAAACCTGGCTTCGGATTTGCACGTTGGCTGCCAAAGCTGATCAGCAGCGGGCTTTGTGAAGATGCCTGGTCTACCACGTGCCTCCAGCTGGTCACGCCCAAGACTCCCTGAGCCCTCTGGAAGGGCAGCACTTGCCCAGTGCCTCCCTCCAGGTCCTGCCACATCCAAGAACCACCTGGACTATTATTTACTTAGTATTTTAAACCAATGTACTTTTTAAACTCCAATTTTTTAATAAGATCATTTATGTCACCATATAACACCCAAAGCAGTAGAATTTGTCATACACAGAAGGCAATGCTAAAAATACAATGAAAATGGAACCAGGAAGTCTAGCTTGATACCCTTGGCCTGTATAACTGAGCCTTGTGCCAGTTAAAAGGGCAAAGCAGTAGGTGCTCAGGGGGTGTCGGGGCCCTGAAAGCTGATCTGATCCGCTGCTGCGTATTCACTACCGCCCTGGGACGCCTCCAGCAGACCACCTCACTGGGGGAAACATCAGGACAGCGTGGCCAGGAGCCCAATGCTGCCACCTCATAGATGGGTATCTGAGATGAGTCATCGAACTTCTGCAAGCCTCAGTTTCCTCCCTGGTCTAATGGAACCCTCCTTGGCGGCTTCACAGGGTGATGCTTGGGGCAGGTGATGGAGATGTGGGAGAGGCAGTTATTTTTAACCACCCAGCCAAGCCCCTTGCCAGGAGGGACTCCCAGAAATGAAGCCTTACCCTTGAGGGAGTTCCCCGCCACTCCAAGCTTGGGGCCTGGGATGGCAGCTGTGAGGGCACCAGCACCATCTGGGGACTCGCTGGGTACCAATTATCACCGCCCTTGGGCTACTTCAAAGGCTGCCCACACAGACACACCCTCCTTGGTAACCAGTCCTCAGGAGGAAGGGCACCCAAGGAAAGGGGGAAGGCTTCCTGGGCTAGAGCCCCTTCAGGGTCTGACACGCCATTGACACTGACCACGTCATTCATTAAGCAAGCACCAACTATACATCATTCACTATCCCAATCTAATTTGCACAAGCCCTTAGGCAGGTGCTACTATTATCCCTGTTTTACAGAGAAGGAAACCGAGGCTTAGGAGATGAAGTCTGAGGTGTTGGTGGAGCTGGGATTTAAACCAAAATATGTCCAACTGCAAAGCATGTAAGTAACAATTTTAGAGGGTATACGGAGGTGACCCTAAGTAACAAGGAATCACATATAGTGAGCAAGCAATTTGCTTTTCAGTTTTTGGTCAATCCTTATGATTATTTAGAGGAGAAAGTTCAGTTTGGTGCTGGTATATCTTATGTTTATCACCCGACAGTTGTTAATCTCTTTTTAACAAAGAATACAGGCCAAGGCCCTGTGACTTTAGCTGGCTTTGGTATTTGGCCAAAAGTTAATGACTTTGGCAGTTAGTGTTTTTATCCATGCCAAGCGATGATGATTTTCTCTTTAGTGACAGACATTTTTTAAAAAATAAATTCACATAAAAAAGTAGTTTTACAGATGAAGCACTAAAACTAGTGCATTTCATCTTAAACTGCAAATTATAAAGGGAATAATAGTAACTTGACAGTGGAGAGACCTGGCAGACACCACCTTCACCAACTGATCAAAGTTAACATCGCCAGAAAGGGGACAGATGGCATGTGCCTCTCGATAAGATGCACTGAAGACACACACTCACTTCTGCAATATTCCTGCCAAGAATGCCTCATCTGAATCTAATCTCGAGTATAACCATCAGACAAACCCAAATTGAGAGACAGTTTACAAAACACCAGCCTTGTACTCTGCTTAATATGTCAATGTCACAAGAGAGAAAGACAGACTGAAGAGCTGATCCAGACTGAAGAAGGCTCGAGATTAATGCAAAAGCTGATCTGGGATTGCATCTTGGACCTCAACTCTCCCCTTTTTATTGTTAAGGGACACTACTGGGACAATTTTTTTTTTTTTTTCGTTTTGAGACAGGGTCTCGCTCAGTCACCCAGGCTGGAGTGCAGTGGTGGAATAATAACTCACTGCAGCCTTGAACTCCCGGACTCAAGCAATCCTCCTGCCTGAGCCTTCCGAGTAACTGGGACTATGGGCGTGTACCACAACACCTCGCTATTTTTTTTTTCCTACTTTTTGTAGAGACGGGGTCTCACTATGTTGCCCAGGCTGGTTTCAAACTCAAGTGATCCTTCCACCTCAGCCTCTATAAAATTTGAATAAAGTTGTAGATGAAATTGGT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(AS)]][[Category:NONHSAG018591]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG018591]][[Category:Transcripts]] |
Latest revision as of 02:58, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140540 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2379 nt |
Genomic location |
chr16+:11027760..11030137 |
Exon number |
1 |
Exons |
11027760..11030137 |
Genome context |
|
Sequence |
000001 ATCTCAGAAT GAAGGCATGG CTGGGGTCTG GCTGTCTCCT GGTGGCCGGA AGGAGACAGA CGGCAAAGGA GAAGCTGCCT 000080
000081 GTCTCTGCAC AGGTCCATGT CCCTGAGGAA AGCCAACGTC ACAGAGAAAT GATGACCACT TTCTCAAACC TGGCTTCGGA 000160 000161 TTTGCACGTT GGCTGCCAAA GCTGATCAGC AGCGGGCTTT GTGAAGATGC CTGGTCTACC ACGTGCCTCC AGCTGGTCAC 000240 000241 GCCCAAGACT CCCTGAGCCC TCTGGAAGGG CAGCACTTGC CCAGTGCCTC CCTCCAGGTC CTGCCACATC CAAGAACCAC 000320 000321 CTGGACTATT ATTTACTTAG TATTTTAAAC CAATGTACTT TTTAAACTCC AATTTTTTAA TAAGATCATT TATGTCACCA 000400 000401 TATAACACCC AAAGCAGTAG AATTTGTCAT ACACAGAAGG CAATGCTAAA AATACAATGA AAATGGAACC AGGAAGTCTA 000480 000481 GCTTGATACC CTTGGCCTGT ATAACTGAGC CTTGTGCCAG TTAAAAGGGC AAAGCAGTAG GTGCTCAGGG GGTGTCGGGG 000560 000561 CCCTGAAAGC TGATCTGATC CGCTGCTGCG TATTCACTAC CGCCCTGGGA CGCCTCCAGC AGACCACCTC ACTGGGGGAA 000640 000641 ACATCAGGAC AGCGTGGCCA GGAGCCCAAT GCTGCCACCT CATAGATGGG TATCTGAGAT GAGTCATCGA ACTTCTGCAA 000720 000721 GCCTCAGTTT CCTCCCTGGT CTAATGGAAC CCTCCTTGGC GGCTTCACAG GGTGATGCTT GGGGCAGGTG ATGGAGATGT 000800 000801 GGGAGAGGCA GTTATTTTTA ACCACCCAGC CAAGCCCCTT GCCAGGAGGG ACTCCCAGAA ATGAAGCCTT ACCCTTGAGG 000880 000881 GAGTTCCCCG CCACTCCAAG CTTGGGGCCT GGGATGGCAG CTGTGAGGGC ACCAGCACCA TCTGGGGACT CGCTGGGTAC 000960 000961 CAATTATCAC CGCCCTTGGG CTACTTCAAA GGCTGCCCAC ACAGACACAC CCTCCTTGGT AACCAGTCCT CAGGAGGAAG 001040 001041 GGCACCCAAG GAAAGGGGGA AGGCTTCCTG GGCTAGAGCC CCTTCAGGGT CTGACACGCC ATTGACACTG ACCACGTCAT 001120 001121 TCATTAAGCA AGCACCAACT ATACATCATT CACTATCCCA ATCTAATTTG CACAAGCCCT TAGGCAGGTG CTACTATTAT 001200 001201 CCCTGTTTTA CAGAGAAGGA AACCGAGGCT TAGGAGATGA AGTCTGAGGT GTTGGTGGAG CTGGGATTTA AACCAAAATA 001280 001281 TGTCCAACTG CAAAGCATGT AAGTAACAAT TTTAGAGGGT ATACGGAGGT GACCCTAAGT AACAAGGAAT CACATATAGT 001360 001361 GAGCAAGCAA TTTGCTTTTC AGTTTTTGGT CAATCCTTAT GATTATTTAG AGGAGAAAGT TCAGTTTGGT GCTGGTATAT 001440 001441 CTTATGTTTA TCACCCGACA GTTGTTAATC TCTTTTTAAC AAAGAATACA GGCCAAGGCC CTGTGACTTT AGCTGGCTTT 001520 001521 GGTATTTGGC CAAAAGTTAA TGACTTTGGC AGTTAGTGTT TTTATCCATG CCAAGCGATG ATGATTTTCT CTTTAGTGAC 001600 001601 AGACATTTTT TAAAAAATAA ATTCACATAA AAAAGTAGTT TTACAGATGA AGCACTAAAA CTAGTGCATT TCATCTTAAA 001680 001681 CTGCAAATTA TAAAGGGAAT AATAGTAACT TGACAGTGGA GAGACCTGGC AGACACCACC TTCACCAACT GATCAAAGTT 001760 001761 AACATCGCCA GAAAGGGGAC AGATGGCATG TGCCTCTCGA TAAGATGCAC TGAAGACACA CACTCACTTC TGCAATATTC 001840 001841 CTGCCAAGAA TGCCTCATCT GAATCTAATC TCGAGTATAA CCATCAGACA AACCCAAATT GAGAGACAGT TTACAAAACA 001920 001921 CCAGCCTTGT ACTCTGCTTA ATATGTCAAT GTCACAAGAG AGAAAGACAG ACTGAAGAGC TGATCCAGAC TGAAGAAGGC 002000 002001 TCGAGATTAA TGCAAAAGCT GATCTGGGAT TGCATCTTGG ACCTCAACTC TCCCCTTTTT ATTGTTAAGG GACACTACTG 002080 002081 GGACAATTTT TTTTTTTTTT TCGTTTTGAG ACAGGGTCTC GCTCAGTCAC CCAGGCTGGA GTGCAGTGGT GGAATAATAA 002160 002161 CTCACTGCAG CCTTGAACTC CCGGACTCAA GCAATCCTCC TGCCTGAGCC TTCCGAGTAA CTGGGACTAT GGGCGTGTAC 002240 002241 CACAACACCT CGCTATTTTT TTTTTCCTAC TTTTTGTAGA GACGGGGTCT CACTATGTTG CCCAGGCTGG TTTCAAACTC 002320 002321 AAGTGATCCT TCCACCTCAG CCTCTATAAA ATTTGAATAA AGTTGTAGAT GAAATTGGT |
Predicted Small Protein
Name | NONHSAT140540_smProtein_2009:2206 |
Length | 66 |
Molecular weight | 7427.5165 |
Aromaticity | 0.138461538462 |
Instability index | 55.7507692308 |
Isoelectric point | 5.36663818359 |
Runs | 13 |
Runs residual | 0.0497115384615 |
Runs probability | 0.048231489408 |
Amino acid sequence | MQKLIWDCILDLNSPLFIVKGHYWDNFFFFFVLRQGLAQSPRLECSGGIITHCSLELPDS SNPPA |
Secondary structure | LHHHHHHHHHHLLLLLEEEELLEELLHHHHHHHHLLLLLLLEEEELLLEEEEEELLLLLL LLLLL |
PRMN | - |
PiMo | - |