Difference between revisions of "NONHSAT140895"

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sequence = <dnaseq>GCAGCTGAAAGAATGTCTATTCTACATCATGATCGAGAAGTTCGCAAAGAGAAAATGCTCAGGCAAATGGATAAAATGAAAAGTCCACGAGTGGCTCTTTCAGCTGCAACACAGAAGTCTCTTGATAGGAAGAAATACATGAAGTAAGTTTTTTGTATCATGTCATGTTAGTTATCAAACCAATTAATTTTAGTCATCTGTTGGTCTATTTGCATATTTAAATTTAGAAATAAAGAGTTAATTTTTCTGCAGTTGAGCTGATAGAAATCCCCTTTATATAAAGAAATTTATTAAAATCAGGTGCTAAAATCTCATTTCATCTTAGATGAATTTATTTACTAAATTTGACAACATTCAACTCATATAACTGATAGCTGGTTAATCTTAAAAACAGTTAATCTTTATATTCAGTGCCTAAATATATTCCTTTTCTGATGTCCTAAAGGTTTCTTGGGAATAAAGACTTAATGGGAAAAATATCTTAATAACTTTTTTAAAAAATTCTTCTTTCTTGAATGCAGTCTTTAATATGCTTAGTACAGGTCTTCCAGTAGTACACCAGCTTCTAAATGATGATTTGTTTCTGTCATCCTGTATTACATTTGTAAGCATGTTTTCTTCCCTTCTCTAAATACATTATGTCCTTATTTTTATATTGTGTTAGAGCTGCTGAAATGGGAATGCCAAATAAGAAATTTCTGGTTAAACAAAATCCTTCTGAAACAAGGTGAGAAAAATCACTTAGTCTTAATGAGAGGCTTTTTGTTTTTTATAGAAAAAAAAAATTggctgggcacggtggctcacgcctgtaatcc</dnaseq>|
 
sequence = <dnaseq>GCAGCTGAAAGAATGTCTATTCTACATCATGATCGAGAAGTTCGCAAAGAGAAAATGCTCAGGCAAATGGATAAAATGAAAAGTCCACGAGTGGCTCTTTCAGCTGCAACACAGAAGTCTCTTGATAGGAAGAAATACATGAAGTAAGTTTTTTGTATCATGTCATGTTAGTTATCAAACCAATTAATTTTAGTCATCTGTTGGTCTATTTGCATATTTAAATTTAGAAATAAAGAGTTAATTTTTCTGCAGTTGAGCTGATAGAAATCCCCTTTATATAAAGAAATTTATTAAAATCAGGTGCTAAAATCTCATTTCATCTTAGATGAATTTATTTACTAAATTTGACAACATTCAACTCATATAACTGATAGCTGGTTAATCTTAAAAACAGTTAATCTTTATATTCAGTGCCTAAATATATTCCTTTTCTGATGTCCTAAAGGTTTCTTGGGAATAAAGACTTAATGGGAAAAATATCTTAATAACTTTTTTAAAAAATTCTTCTTTCTTGAATGCAGTCTTTAATATGCTTAGTACAGGTCTTCCAGTAGTACACCAGCTTCTAAATGATGATTTGTTTCTGTCATCCTGTATTACATTTGTAAGCATGTTTTCTTCCCTTCTCTAAATACATTATGTCCTTATTTTTATATTGTGTTAGAGCTGCTGAAATGGGAATGCCAAATAAGAAATTTCTGGTTAAACAAAATCCTTCTGAAACAAGGTGAGAAAAATCACTTAGTCTTAATGAGAGGCTTTTTGTTTTTTATAGAAAAAAAAAATTggctgggcacggtggctcacgcctgtaatcc</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG018791]]
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[[Category:Sense]][[Category:NONHSAG018791]][[Category:Transcripts]]

Latest revision as of 03:00, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT140895

Source

NONCODE4.0

Same with

,

Classification

sense

Length

818 nt

Genomic location

chr16+:19556464..19557887

Exon number

2

Exons

19556464..19556532,19557139..19557887

Genome context

Sequence
000001 GCAGCTGAAA GAATGTCTAT TCTACATCAT GATCGAGAAG TTCGCAAAGA GAAAATGCTC AGGCAAATGG ATAAAATGAA 000080
000081 AAGTCCACGA GTGGCTCTTT CAGCTGCAAC ACAGAAGTCT CTTGATAGGA AGAAATACAT GAAGTAAGTT TTTTGTATCA 000160
000161 TGTCATGTTA GTTATCAAAC CAATTAATTT TAGTCATCTG TTGGTCTATT TGCATATTTA AATTTAGAAA TAAAGAGTTA 000240
000241 ATTTTTCTGC AGTTGAGCTG ATAGAAATCC CCTTTATATA AAGAAATTTA TTAAAATCAG GTGCTAAAAT CTCATTTCAT 000320
000321 CTTAGATGAA TTTATTTACT AAATTTGACA ACATTCAACT CATATAACTG ATAGCTGGTT AATCTTAAAA ACAGTTAATC 000400
000401 TTTATATTCA GTGCCTAAAT ATATTCCTTT TCTGATGTCC TAAAGGTTTC TTGGGAATAA AGACTTAATG GGAAAAATAT 000480
000481 CTTAATAACT TTTTTAAAAA ATTCTTCTTT CTTGAATGCA GTCTTTAATA TGCTTAGTAC AGGTCTTCCA GTAGTACACC 000560
000561 AGCTTCTAAA TGATGATTTG TTTCTGTCAT CCTGTATTAC ATTTGTAAGC ATGTTTTCTT CCCTTCTCTA AATACATTAT 000640
000641 GTCCTTATTT TTATATTGTG TTAGAGCTGC TGAAATGGGA ATGCCAAATA AGAAATTTCT GGTTAAACAA AATCCTTCTG 000720
000721 AAACAAGGTG AGAAAAATCA CTTAGTCTTA ATGAGAGGCT TTTTGTTTTT TATAGAAAAA AAAAATTggc tgggcacggt 000800
000801 ggctcacgcc tgtaatcc
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Predicted Small Protein

Name NONHSAT140895_smProtein_638:730
Length 31
Molecular weight 3490.1485
Aromaticity 0.1
Instability index 63.14
Isoelectric point 9.62469482422
Runs 6
Runs residual 0.00225225225225
Runs probability 0.0401725254667
Amino acid sequence MSLFLYCVRAAEMGMPNKKFLVKQNPSETR
Secondary structure LLHHHHHHHHHHLLLLLHHHEELLLLLLLL
PRMN -
PiMo -