Difference between revisions of "NONHSAT142180"

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sequence = <dnaseq>CCGTGTATTAGAGTAATTGTCATTAGATCACCTGTGTTGCATACAGGGTCACTCTTTATCATTACTGCTGTAAAACCTGTGGCAATTGGAAGAGAAAATGATCCTGAGCATACTCTTTGAATCCCTGAAGTTGGTGTCAGTAAGTTTCATGCAGAAATTTATTTTGACCATGACTTACAAAGTTATGTCCTTGTAGATCAAGGCAGTCAAAAGAGAACAGTTGTTAATGGAAAATGGATTGTTCAACTGGAAATTAATGTGACCCTTATGTACTTGAGCATAGTCATGAACTGAAAATTGGAGAGACTGTGTTACCCTTTTACACTCATCCTAGCACTGATACCTGGGCTGGCTGTGAACCACGACAAGTTAGAGCTCACCCTTGCCTTGATAAGAAAGATGAATTGTTAATTGGACCAACTCTAAGCAAGGAGAAAAAATAGTTGGAAATAAGAAAATAATTAAAGAAAATACAATTAAAATATGTTTACAGAAACAGACTATGAAGATAAATAGACATTGAAGAATCTAAAATATAAAAATAGAGGTGGAAAACATAGTGAGCAGATTGGAAGTGAAGGAACCTTCCGAAGAGATAATTCTCCTACATCTGTTCATTCTGAAATTACCAACAGCAACAAAAGTAAGATGTTGCAGAAGATGGGTTGGATAAAAGGTGAGAGCCTGGGGAACGATGGCTGGGAATGAAAACTCTGATTCAGCTTCAGCTTCAGCGAACACCTGTAGGCTTGGGGACAGGCAATCCATCCTCATTTGAAGATGTTCACCTTCTCCAAAACAAAAACAAACATACTGGGACAAAGCATGAGATAGGTTTGCTGAAAACTTCCCAGAAACTAAACGTTAAAAAAATGACCCAGGGACCATGACTTGGGTAAAAGGGACTGTAGAG</dnaseq>|
 
sequence = <dnaseq>CCGTGTATTAGAGTAATTGTCATTAGATCACCTGTGTTGCATACAGGGTCACTCTTTATCATTACTGCTGTAAAACCTGTGGCAATTGGAAGAGAAAATGATCCTGAGCATACTCTTTGAATCCCTGAAGTTGGTGTCAGTAAGTTTCATGCAGAAATTTATTTTGACCATGACTTACAAAGTTATGTCCTTGTAGATCAAGGCAGTCAAAAGAGAACAGTTGTTAATGGAAAATGGATTGTTCAACTGGAAATTAATGTGACCCTTATGTACTTGAGCATAGTCATGAACTGAAAATTGGAGAGACTGTGTTACCCTTTTACACTCATCCTAGCACTGATACCTGGGCTGGCTGTGAACCACGACAAGTTAGAGCTCACCCTTGCCTTGATAAGAAAGATGAATTGTTAATTGGACCAACTCTAAGCAAGGAGAAAAAATAGTTGGAAATAAGAAAATAATTAAAGAAAATACAATTAAAATATGTTTACAGAAACAGACTATGAAGATAAATAGACATTGAAGAATCTAAAATATAAAAATAGAGGTGGAAAACATAGTGAGCAGATTGGAAGTGAAGGAACCTTCCGAAGAGATAATTCTCCTACATCTGTTCATTCTGAAATTACCAACAGCAACAAAAGTAAGATGTTGCAGAAGATGGGTTGGATAAAAGGTGAGAGCCTGGGGAACGATGGCTGGGAATGAAAACTCTGATTCAGCTTCAGCTTCAGCGAACACCTGTAGGCTTGGGGACAGGCAATCCATCCTCATTTGAAGATGTTCACCTTCTCCAAAACAAAAACAAACATACTGGGACAAAGCATGAGATAGGTTTGCTGAAAACTTCCCAGAAACTAAACGTTAAAAAAATGACCCAGGGACCATGACTTGGGTAAAAGGGACTGTAGAG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG019298]]
+
[[Category:Intergenic]][[Category:NONHSAG019298]][[Category:Transcripts]]

Latest revision as of 03:04, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT142180

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

913 nt

Genomic location

chr16+:34581756..34582668

Exon number

1

Exons

34581756..34582668

Genome context

Sequence
000001 CCGTGTATTA GAGTAATTGT CATTAGATCA CCTGTGTTGC ATACAGGGTC ACTCTTTATC ATTACTGCTG TAAAACCTGT 000080
000081 GGCAATTGGA AGAGAAAATG ATCCTGAGCA TACTCTTTGA ATCCCTGAAG TTGGTGTCAG TAAGTTTCAT GCAGAAATTT 000160
000161 ATTTTGACCA TGACTTACAA AGTTATGTCC TTGTAGATCA AGGCAGTCAA AAGAGAACAG TTGTTAATGG AAAATGGATT 000240
000241 GTTCAACTGG AAATTAATGT GACCCTTATG TACTTGAGCA TAGTCATGAA CTGAAAATTG GAGAGACTGT GTTACCCTTT 000320
000321 TACACTCATC CTAGCACTGA TACCTGGGCT GGCTGTGAAC CACGACAAGT TAGAGCTCAC CCTTGCCTTG ATAAGAAAGA 000400
000401 TGAATTGTTA ATTGGACCAA CTCTAAGCAA GGAGAAAAAA TAGTTGGAAA TAAGAAAATA ATTAAAGAAA ATACAATTAA 000480
000481 AATATGTTTA CAGAAACAGA CTATGAAGAT AAATAGACAT TGAAGAATCT AAAATATAAA AATAGAGGTG GAAAACATAG 000560
000561 TGAGCAGATT GGAAGTGAAG GAACCTTCCG AAGAGATAAT TCTCCTACAT CTGTTCATTC TGAAATTACC AACAGCAACA 000640
000641 AAAGTAAGAT GTTGCAGAAG ATGGGTTGGA TAAAAGGTGA GAGCCTGGGG AACGATGGCT GGGAATGAAA ACTCTGATTC 000720
000721 AGCTTCAGCT TCAGCGAACA CCTGTAGGCT TGGGGACAGG CAATCCATCC TCATTTGAAG ATGTTCACCT TCTCCAAAAC 000800
000801 AAAAACAAAC ATACTGGGAC AAAGCATGAG ATAGGTTTGC TGAAAACTTC CCAGAAACTA AACGTTAAAA AAATGACCCA 000880
000881 GGGACCATGA CTTGGGTAAA AGGGACTGTA GAG
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Predicted Small Protein

Name NONHSAT142180_smProtein_704:889
Length 62
Molecular weight 6763.8033
Aromaticity 0.016393442623
Instability index 42.8983606557
Isoelectric point 10.2183227539
Runs 9
Runs residual 0.00527605049934
Runs probability 0.0400400400401
Amino acid sequence MKTLIQLQLQRTPVGLGTGNPSSFEDVHLLQNKNKHTGTKHEIGLLKTSQKLNVKKMTQG
P
Secondary structure LLEHHHHHHLLLLLLLLLLLLLLHHHHEELLLLLLLLLLLEEEEEEEELLLLLLLLLLLL
L
PRMN -
PiMo -