Difference between revisions of "NONHSAT145815"
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sequence = <dnaseq>GCATTTGAAAGAGCAGCTAACATCCGTTAACAACATACAGAAGATATCCCTGGAGCCATATTTGGCGGTGATGACACCTGGCCCTGGTAAAAGCACATATTGGACAAGGACTCACAGAAAACACTGGACTTCCCCGGAAGCTACTTGAAAAACATGACCCCTGGCCGGCCTATGTCACCTATACCTCTCAGACAGTGAAAAGACTCATTGAGAAAAGCAAAACTAGAGAACTGGAATGCATGCGTGCCCTCGAGGAAAGACCCTGGGCATCAAGGCAGAATAAACCTTCCAGCGTCATTCAGCCGAAAAGGAGGAAGTCTTCCAAGTCTTCTGGCAAAGCTGTGTTCAGGGACACGCTGTCAGAATCCACGTTATCAATGTGGGGCGCTTATTCGGTATTGGCCATGGCTCCTACCATGATCCCAGAACCCACACACTTACATGCGGATTCCAGAGACTGTCCAACTGAAAACTATAACAAGATCATCTTTGCCCGCAAGCCTATGATGAGGATGCTCCCTACAGTTCGCTACTGACCAACAAGGAGAAACATGCAAATGTTTTAGCCAGGGGTCCC</dnaseq>| | sequence = <dnaseq>GCATTTGAAAGAGCAGCTAACATCCGTTAACAACATACAGAAGATATCCCTGGAGCCATATTTGGCGGTGATGACACCTGGCCCTGGTAAAAGCACATATTGGACAAGGACTCACAGAAAACACTGGACTTCCCCGGAAGCTACTTGAAAAACATGACCCCTGGCCGGCCTATGTCACCTATACCTCTCAGACAGTGAAAAGACTCATTGAGAAAAGCAAAACTAGAGAACTGGAATGCATGCGTGCCCTCGAGGAAAGACCCTGGGCATCAAGGCAGAATAAACCTTCCAGCGTCATTCAGCCGAAAAGGAGGAAGTCTTCCAAGTCTTCTGGCAAAGCTGTGTTCAGGGACACGCTGTCAGAATCCACGTTATCAATGTGGGGCGCTTATTCGGTATTGGCCATGGCTCCTACCATGATCCCAGAACCCACACACTTACATGCGGATTCCAGAGACTGTCCAACTGAAAACTATAACAAGATCATCTTTGCCCGCAAGCCTATGATGAGGATGCTCCCTACAGTTCGCTACTGACCAACAAGGAGAAACATGCAAATGTTTTAGCCAGGGGTCCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG020915]] | + | [[Category:Sense]][[Category:NONHSAG020915]][[Category:Transcripts]] |
Latest revision as of 03:19, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145815 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
577 nt |
Genomic location |
chr17-:15341049..15355934 |
Exon number |
2 |
Exons |
15341049..15341517,15355827..15355934 |
Genome context |
|
Sequence |
000001 GCATTTGAAA GAGCAGCTAA CATCCGTTAA CAACATACAG AAGATATCCC TGGAGCCATA TTTGGCGGTG ATGACACCTG 000080
000081 GCCCTGGTAA AAGCACATAT TGGACAAGGA CTCACAGAAA ACACTGGACT TCCCCGGAAG CTACTTGAAA AACATGACCC 000160 000161 CTGGCCGGCC TATGTCACCT ATACCTCTCA GACAGTGAAA AGACTCATTG AGAAAAGCAA AACTAGAGAA CTGGAATGCA 000240 000241 TGCGTGCCCT CGAGGAAAGA CCCTGGGCAT CAAGGCAGAA TAAACCTTCC AGCGTCATTC AGCCGAAAAG GAGGAAGTCT 000320 000321 TCCAAGTCTT CTGGCAAAGC TGTGTTCAGG GACACGCTGT CAGAATCCAC GTTATCAATG TGGGGCGCTT ATTCGGTATT 000400 000401 GGCCATGGCT CCTACCATGA TCCCAGAACC CACACACTTA CATGCGGATT CCAGAGACTG TCCAACTGAA AACTATAACA 000480 000481 AGATCATCTT TGCCCGCAAG CCTATGATGA GGATGCTCCC TACAGTTCGC TACTGACCAA CAAGGAGAAA CATGCAAATG 000560 000561 TTTTAGCCAG GGGTCCC |
Predicted Small Protein
Name | NONHSAT145815_smProtein_239:535 |
Length | 99 |
Molecular weight | 11254.9709 |
Aromaticity | 0.0714285714286 |
Instability index | 50.5826530612 |
Isoelectric point | 10.3340454102 |
Runs | 12 |
Runs residual | 0.0165935533092 |
Runs probability | 0.0283445209916 |
Amino acid sequence | MRALEERPWASRQNKPSSVIQPKRRKSSKSSGKAVFRDTLSESTLSMWGAYSVLAMAPTM IPEPTHLHADSRDCPTENYNKIIFARKPMMRMLPTVRY |
Secondary structure | LLLLLLLLHHHHLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLLHHHHHEELLLHHHHLLLLLL |
PRMN | - |
PiMo | - |