Difference between revisions of "Lnc-CD80-1:1"

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sequence = <dnaseq>AAGATGGAGTCTCACTCTGCTGCCCAGGCTGCAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCTATTCTCCCCCACCTCAGTCTCCCAAGTAGCTGGGACTACAGGTGCATGCCACCACAACTATTTTTTTTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGATCTCAAGTGATCCACCCGCCTCAGCTTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCAGGCCACATGAATTTTTTTCAATAAATATATTGAAAAATGTTTTGGAAATGTGCAATAATTTGAAAAAACTCGCAGATAAACTGTCTAGCCTAGAAATATCAAAAAAAATTAAGAAAAATGTATGTCTTTAAGTGCATAAAATATATGTAGACACCAATCTATTTATGTGTGAAGCAACTGTTTATGTTATTGGTAAGGCCTCTGGATAACAGCAGGCCATTAGTAGTTAAGTTTTGGGGGAGTCAAAAGTTATATGTGGATTTTTCAACTGCACAGGGCAGATGTCAGCATTGCTATTGTGTTCAAAGCTGTTTTCAGTGTTGTCCAAAGGTCAACTTGTATATGTACACATTTATATATCTTCCTACTCAGAAATCAGAGACACATTTACTTCTATATTTTCCCCAATCTTTTATGGATTTTTTTACATAAGCACCATAATAAATGTTAACTAATTTTGTTGTACTGAATATAGTTATAATTTCTTTCCAAATAGTTAATAACTGTTCCAGCCCAAGAATGGTCTATTCTTAAACCACGAATGTGAAGTATCACCTTTACTTATTTGTGGGTGCTTGGTTTTGTTCCTGACCTTGCAATTCCATTCCACAGATCTACCAATACCTCTTTATTGTCCTCTTTATTGTAACTTTATACAGATTTTAATTTTACAGTTGCAAGAACCCCTCATTATTTTTTGCTGAAATGTCTTTGCTATGCTCTTAATAATCAGCATTTTAGATATGATTTAGACATTGTATCAAGTTTTTTTAAAAAAGCCTGTAATTTTGATTTGAATTGCTTTCAATTTATAAATGAAGTAGAAAAATACTGGGTTAACTATCAACTGTTTCCCCATTTTTATTATTTATGATTTGTAATTTTCTTCAGAGAAGTTGTACATTTATTAAATTTATTCCTTATTATATTACATTCTTAGTACTATTATTAAGAAAATTTTTTACTTTTCAAGTAACTGCTGAAATATAAAAAGGCTATTTATATATTTACACTTTACTGATAGCAATAATTTTTCAAGTCATCTTTTAAAATATTACCTACAAATACAGAAAATTTTGCTTCCTCCTATCTAAAAGCACTGCCTTTTTCCCCTTCTGTGTTAATATATTTTTAACAGTTTTATTGAGGTATAATTTACATAACACAAAATTCACCTAAATGTACAATTCAATAATTTTTAGTAAAAAAATCTAGTGGCCCGGCACGGTGGTTCATGCCTGAAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCTGCTAAAAATACAAAAATTAGCCGGGTATGGTGGCATATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCCCTTGAACCCGGAAGGTGGAGGTTGCAGCGAGCCGAGATCGCACCACTGCACTCCAGGTTCACGCCATTTTCCTGCCTCAGCCTCCCAAGTAGCCGGGATTACAGATGTGCACCACCATGCCCAGCTAATTTTCGTATTTTTAGTGGAGGCGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCCAACCTCAAGAGATCTGCCTGCCTCAGCCTCCCAAATCGCTGGGATTACAGGCATAAGCCACCACACCTGGCCTTCCAATGGTTTTCTTAATTCATTTGGATTTTCTACTTGCAAGATGTTGTGGTTACCCTCCAGAGACAATAAACTCCCCCACCCAAAATTTGAATCAGATATTGAAATGCCAAAGTACCAAGAGGTACTAAGAGGATACCAAAAGGTTTATTACACATATAATAAGGCTTTCCAGGGAGAGCAAGGCAAGATCCCAAGCATGTCCCAAAATGACTTGAGAACCTGAAGGCTGACTGACTGGCTTGTGGTTTTAGAAGGTGGGGCTAGAGCAAGAGCTCCCTCATGTAGGCCTGAGCTTGCATGGTTGAAACTTCCTGCTGGTGTCAACCAAGGTAGCACTTGGGCTTTCTTATCAGCTTGTCAAGATGTGGGGCAAAAAGGAAAGGGAGACTTCCAGTTTCTGGTATGGCATGTGAGAAGTTTAGAGTTTATCACTTATTCCTAACAACAAGTAAAAAGCTAAACAAATGGAAAAACTGACAACTCTTCTTAGATCCACCAAAGAAGTGAGATCATGGGTAAACTGCTGCCCTCAAAATAGGAGAGACAGACAGATAAATACAGAGAATCACACCTTATTAGAGCAGAAACCCACGAGCAGAAGCCTCCATGGAAACCAGTACCAGAGTAGGAAACCTTGACTATAAATGATAAATTGCTGGAAGTTCAGTGTAGAAAAGTCTAAGACCTAAAAACTGTAGGGGAGCCAATCATAGAGGGTCCCCACACTCCAGGAGCTCTACCAAGTTCTCCCAGTAAAGATCTGAGAAAAATCCCCTCAGGCTTCTGGCAAGGGGGAAGAAAAGTAACCATTTTGAAATATGCCAGAACATTCCGTT</dnaseq>|
 
sequence = <dnaseq>AAGATGGAGTCTCACTCTGCTGCCCAGGCTGCAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCTATTCTCCCCCACCTCAGTCTCCCAAGTAGCTGGGACTACAGGTGCATGCCACCACAACTATTTTTTTTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGATCTCAAGTGATCCACCCGCCTCAGCTTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCAGGCCACATGAATTTTTTTCAATAAATATATTGAAAAATGTTTTGGAAATGTGCAATAATTTGAAAAAACTCGCAGATAAACTGTCTAGCCTAGAAATATCAAAAAAAATTAAGAAAAATGTATGTCTTTAAGTGCATAAAATATATGTAGACACCAATCTATTTATGTGTGAAGCAACTGTTTATGTTATTGGTAAGGCCTCTGGATAACAGCAGGCCATTAGTAGTTAAGTTTTGGGGGAGTCAAAAGTTATATGTGGATTTTTCAACTGCACAGGGCAGATGTCAGCATTGCTATTGTGTTCAAAGCTGTTTTCAGTGTTGTCCAAAGGTCAACTTGTATATGTACACATTTATATATCTTCCTACTCAGAAATCAGAGACACATTTACTTCTATATTTTCCCCAATCTTTTATGGATTTTTTTACATAAGCACCATAATAAATGTTAACTAATTTTGTTGTACTGAATATAGTTATAATTTCTTTCCAAATAGTTAATAACTGTTCCAGCCCAAGAATGGTCTATTCTTAAACCACGAATGTGAAGTATCACCTTTACTTATTTGTGGGTGCTTGGTTTTGTTCCTGACCTTGCAATTCCATTCCACAGATCTACCAATACCTCTTTATTGTCCTCTTTATTGTAACTTTATACAGATTTTAATTTTACAGTTGCAAGAACCCCTCATTATTTTTTGCTGAAATGTCTTTGCTATGCTCTTAATAATCAGCATTTTAGATATGATTTAGACATTGTATCAAGTTTTTTTAAAAAAGCCTGTAATTTTGATTTGAATTGCTTTCAATTTATAAATGAAGTAGAAAAATACTGGGTTAACTATCAACTGTTTCCCCATTTTTATTATTTATGATTTGTAATTTTCTTCAGAGAAGTTGTACATTTATTAAATTTATTCCTTATTATATTACATTCTTAGTACTATTATTAAGAAAATTTTTTACTTTTCAAGTAACTGCTGAAATATAAAAAGGCTATTTATATATTTACACTTTACTGATAGCAATAATTTTTCAAGTCATCTTTTAAAATATTACCTACAAATACAGAAAATTTTGCTTCCTCCTATCTAAAAGCACTGCCTTTTTCCCCTTCTGTGTTAATATATTTTTAACAGTTTTATTGAGGTATAATTTACATAACACAAAATTCACCTAAATGTACAATTCAATAATTTTTAGTAAAAAAATCTAGTGGCCCGGCACGGTGGTTCATGCCTGAAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCTGCTAAAAATACAAAAATTAGCCGGGTATGGTGGCATATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCCCTTGAACCCGGAAGGTGGAGGTTGCAGCGAGCCGAGATCGCACCACTGCACTCCAGGTTCACGCCATTTTCCTGCCTCAGCCTCCCAAGTAGCCGGGATTACAGATGTGCACCACCATGCCCAGCTAATTTTCGTATTTTTAGTGGAGGCGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCCAACCTCAAGAGATCTGCCTGCCTCAGCCTCCCAAATCGCTGGGATTACAGGCATAAGCCACCACACCTGGCCTTCCAATGGTTTTCTTAATTCATTTGGATTTTCTACTTGCAAGATGTTGTGGTTACCCTCCAGAGACAATAAACTCCCCCACCCAAAATTTGAATCAGATATTGAAATGCCAAAGTACCAAGAGGTACTAAGAGGATACCAAAAGGTTTATTACACATATAATAAGGCTTTCCAGGGAGAGCAAGGCAAGATCCCAAGCATGTCCCAAAATGACTTGAGAACCTGAAGGCTGACTGACTGGCTTGTGGTTTTAGAAGGTGGGGCTAGAGCAAGAGCTCCCTCATGTAGGCCTGAGCTTGCATGGTTGAAACTTCCTGCTGGTGTCAACCAAGGTAGCACTTGGGCTTTCTTATCAGCTTGTCAAGATGTGGGGCAAAAAGGAAAGGGAGACTTCCAGTTTCTGGTATGGCATGTGAGAAGTTTAGAGTTTATCACTTATTCCTAACAACAAGTAAAAAGCTAAACAAATGGAAAAACTGACAACTCTTCTTAGATCCACCAAAGAAGTGAGATCATGGGTAAACTGCTGCCCTCAAAATAGGAGAGACAGACAGATAAATACAGAGAATCACACCTTATTAGAGCAGAAACCCACGAGCAGAAGCCTCCATGGAAACCAGTACCAGAGTAGGAAACCTTGACTATAAATGATAAATTGCTGGAAGTTCAGTGTAGAAAAGTCTAAGACCTAAAAACTGTAGGGGAGCCAATCATAGAGGGTCCCCACACTCCAGGAGCTCTACCAAGTTCTCCCAGTAAAGATCTGAGAAAAATCCCCTCAGGCTTCTGGCAAGGGGGAAGAAAAGTAACCATTTTGAAATATGCCAGAACATTCCGTT</dnaseq>|
 
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[[Category:Intronic(AS)]][[Category:lnc-CD80-1]]
+
[[Category:Intronic(AS)]][[Category:lnc-CD80-1]][[Category:Transcripts]]

Latest revision as of 03:54, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-CD80-1:1

Source

LNCipedia2.1

Same with

,

Classification

intronic(AS)

Length

2789 nt

Genomic location

chr3-:119226932..119230323

Exon number

2

Exons

119226932..119227975,119228579..119230323

Genome context

Sequence
000001 AAGATGGAGT CTCACTCTGC TGCCCAGGCT GCAGTGCAAT GGCATGATCT TGGCTCACTG CAACCTCTGC CTCCCGGGTT 000080
000081 CAAGCTATTC TCCCCCACCT CAGTCTCCCA AGTAGCTGGG ACTACAGGTG CATGCCACCA CAACTATTTT TTTTATTTTT 000160
000161 TAGTAGAGAC AGGGTTTCAC CATGTTGGCC AGGCTGGTCT CGAACTCCTG ATCTCAAGTG ATCCACCCGC CTCAGCTTCC 000240
000241 CAAAGTGCTG GGATTACAGG CATGAGCCAC CATGCCAGGC CACATGAATT TTTTTCAATA AATATATTGA AAAATGTTTT 000320
000321 GGAAATGTGC AATAATTTGA AAAAACTCGC AGATAAACTG TCTAGCCTAG AAATATCAAA AAAAATTAAG AAAAATGTAT 000400
000401 GTCTTTAAGT GCATAAAATA TATGTAGACA CCAATCTATT TATGTGTGAA GCAACTGTTT ATGTTATTGG TAAGGCCTCT 000480
000481 GGATAACAGC AGGCCATTAG TAGTTAAGTT TTGGGGGAGT CAAAAGTTAT ATGTGGATTT TTCAACTGCA CAGGGCAGAT 000560
000561 GTCAGCATTG CTATTGTGTT CAAAGCTGTT TTCAGTGTTG TCCAAAGGTC AACTTGTATA TGTACACATT TATATATCTT 000640
000641 CCTACTCAGA AATCAGAGAC ACATTTACTT CTATATTTTC CCCAATCTTT TATGGATTTT TTTACATAAG CACCATAATA 000720
000721 AATGTTAACT AATTTTGTTG TACTGAATAT AGTTATAATT TCTTTCCAAA TAGTTAATAA CTGTTCCAGC CCAAGAATGG 000800
000801 TCTATTCTTA AACCACGAAT GTGAAGTATC ACCTTTACTT ATTTGTGGGT GCTTGGTTTT GTTCCTGACC TTGCAATTCC 000880
000881 ATTCCACAGA TCTACCAATA CCTCTTTATT GTCCTCTTTA TTGTAACTTT ATACAGATTT TAATTTTACA GTTGCAAGAA 000960
000961 CCCCTCATTA TTTTTTGCTG AAATGTCTTT GCTATGCTCT TAATAATCAG CATTTTAGAT ATGATTTAGA CATTGTATCA 001040
001041 AGTTTTTTTA AAAAAGCCTG TAATTTTGAT TTGAATTGCT TTCAATTTAT AAATGAAGTA GAAAAATACT GGGTTAACTA 001120
001121 TCAACTGTTT CCCCATTTTT ATTATTTATG ATTTGTAATT TTCTTCAGAG AAGTTGTACA TTTATTAAAT TTATTCCTTA 001200
001201 TTATATTACA TTCTTAGTAC TATTATTAAG AAAATTTTTT ACTTTTCAAG TAACTGCTGA AATATAAAAA GGCTATTTAT 001280
001281 ATATTTACAC TTTACTGATA GCAATAATTT TTCAAGTCAT CTTTTAAAAT ATTACCTACA AATACAGAAA ATTTTGCTTC 001360
001361 CTCCTATCTA AAAGCACTGC CTTTTTCCCC TTCTGTGTTA ATATATTTTT AACAGTTTTA TTGAGGTATA ATTTACATAA 001440
001441 CACAAAATTC ACCTAAATGT ACAATTCAAT AATTTTTAGT AAAAAAATCT AGTGGCCCGG CACGGTGGTT CATGCCTGAA 001520
001521 ATCCCAGCAC TTTGGGAGGC CGAGGCGGGC GGATCACGAG GTCAGGAGAT TGAGACCATC CTGGCTAACA TGGTGAAACC 001600
001601 CTGTCTCTGC TAAAAATACA AAAATTAGCC GGGTATGGTG GCATATGCCT GTAGTCCCAG CTACTCAGGA GGCTGAGGCA 001680
001681 GGAGAATCCC TTGAACCCGG AAGGTGGAGG TTGCAGCGAG CCGAGATCGC ACCACTGCAC TCCAGGTTCA CGCCATTTTC 001760
001761 CTGCCTCAGC CTCCCAAGTA GCCGGGATTA CAGATGTGCA CCACCATGCC CAGCTAATTT TCGTATTTTT AGTGGAGGCG 001840
001841 AGGTTTCACC ATGTTGGCCA GGCTGGTCTC AAACTCCCAA CCTCAAGAGA TCTGCCTGCC TCAGCCTCCC AAATCGCTGG 001920
001921 GATTACAGGC ATAAGCCACC ACACCTGGCC TTCCAATGGT TTTCTTAAT