Difference between revisions of "Lnc-FOXB1-3:3"

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sequence = <dnaseq>GGCTGCTCCCCTCCTTTCCTCCCGCCACAAGCGCTCGCTGTGGTTCTGGCAGCGAAGTGCGAGACTGGGCTCGCCAGGCGGAAGTGGTTGGAGACTGCGTGTTTTCCTAGAAAGTCCTCGACCTTCGTCGGGGAGAGGAGGGGAGTGATAAATTGGAAGGCGGACAAGCGACAAGTGCGGTACTGGAAAGACCCAAACATACTTGGTTGTGACCTCAGGACTCAATAAAATAAACAGCTGGAAATAAGCAGACTAGTGTAAGAGTGAATTGAAAAGAAAACCCAAGGTCACATCTCCCAAGAAGCAGTAATGTTCCAGCAATAAGAAAAGGACAGTTTTTTGTCTTTTGCATGGTGAGCCTTATATGAATTACATCAATTTTGTCACCAATATCCATCATCAGAACATTTTGTGGCACTGTGGCTCGAACCAATGTCCAGCTTCCACACTCTCTGCTTGGAAGAGGATTACCCTTATTTGGAAGTCTCAGTTTTGAGGATTTGGGGAAAGCAGGCACGCAAGCAGACACACCTTATTCTCTACAGCATCATTTATACCTCAACTAAGTCAGCTGAACAAATGCCTGCTGAAAAGTTCTGGGAGTGGCATAGCTAAGAACCAGAAAGGCGATCTTTCTTTTGGATTAAGTCAACAGAGTCATACCCACAAGGAGAACTATCAAATATCAGATGCGAGAGGTGAAGTGGGGTTATAAGATTCTACATAACACATTGCAAATGGTCACAACAATCAAGACTATATCCATAGATGTCCCAGAAATAATATCTGACTATACAGAGCAGCATTACCAAGCCACCAAGAAGTCTGCCTAGTAATGACAATGATAACAACAGCTAACACTTAATAATCACTTGCCTTACTGACAGATTCAGAGGAAGCCATCAGTTTTTTGGGCAGAATGAAGGGACAAATGGTGAACTGGTATCCGGGATGCTGCCTAGAACCCTGTCCATTTAAGAAGACACCCAGGTGATACGCAATGCACAAAAAGCACTGGAACTCCCAGCAGGCAAGCACTGCAGTCTATAAACCCTCTATTGAGAAAGGCCATGACATGTCTACCAGGGACACAGATTTGGGAGGCAGAACACAAGACAGGGTGAGGGTGAAAAGCAATGGCTACCTGGCCACGTCAGCCAAATCAGCTCCAAAAATCAATGCGATGACAGTGGTCACAGGCAGATCACTCTCACCTTATAACCTGGGATGGCACAGACCAGACAGATTATTTCATTTTGTTTTTTCATTATTTTTATTTACTTTTTTGGAGAGAGGGTCTCACTCCATTGCCCAGGCTGGAGTCCAGTGGTGTGATCATAGCTCACTGTAACCTTGAACTCCTGGACTCAAGTGATAAACCTGCAGCTGTCTTCCCTGAGTAGCTGGGACTACAGGTACACACCACTACACCGGGCCTCTCATTTTGCTTAATTTATTTAATTAGTCAACTAATTTTGAGGGAGGGCAGATTTTGGAAGTAAAGGGCATAGATGGTTCTGTAGTATGCGGAAATCTGAAGCTTTGCTAAGATGGGATCAACATGAAGCATCTGTACATGTACAAATTAGCAAATGTTACCATGACTAACAGTAAAATGAAGAATTAAGGAAATTATAAGGTTAATTTCCTTGAAGTCTCTCAGTAGTCATTTGTGTCTATAGGTGATTTTGTATTTTACAACATTGTATTTTCTAATTTCATGAAAGGAAAGCTAACCAAATTCGTGGATTTTATTTTTTGCCTCAGCCTCAAAAAGCCTTAGGGCTGATTCAGGCCTGGTTGTAGCAATCGGCTGTCTCAAAGGCCTCCTGCATGTTTAAATAGCTTCTCTCCTGTTTATTTTGCACTGTTTTATCCTGTAAGCTGTCTCGAGGCCCTTCCAATATAAGCATGAGGATTTAAATCTTAATAAATTGAGATTTGAA</dnaseq>|
 
sequence = <dnaseq>GGCTGCTCCCCTCCTTTCCTCCCGCCACAAGCGCTCGCTGTGGTTCTGGCAGCGAAGTGCGAGACTGGGCTCGCCAGGCGGAAGTGGTTGGAGACTGCGTGTTTTCCTAGAAAGTCCTCGACCTTCGTCGGGGAGAGGAGGGGAGTGATAAATTGGAAGGCGGACAAGCGACAAGTGCGGTACTGGAAAGACCCAAACATACTTGGTTGTGACCTCAGGACTCAATAAAATAAACAGCTGGAAATAAGCAGACTAGTGTAAGAGTGAATTGAAAAGAAAACCCAAGGTCACATCTCCCAAGAAGCAGTAATGTTCCAGCAATAAGAAAAGGACAGTTTTTTGTCTTTTGCATGGTGAGCCTTATATGAATTACATCAATTTTGTCACCAATATCCATCATCAGAACATTTTGTGGCACTGTGGCTCGAACCAATGTCCAGCTTCCACACTCTCTGCTTGGAAGAGGATTACCCTTATTTGGAAGTCTCAGTTTTGAGGATTTGGGGAAAGCAGGCACGCAAGCAGACACACCTTATTCTCTACAGCATCATTTATACCTCAACTAAGTCAGCTGAACAAATGCCTGCTGAAAAGTTCTGGGAGTGGCATAGCTAAGAACCAGAAAGGCGATCTTTCTTTTGGATTAAGTCAACAGAGTCATACCCACAAGGAGAACTATCAAATATCAGATGCGAGAGGTGAAGTGGGGTTATAAGATTCTACATAACACATTGCAAATGGTCACAACAATCAAGACTATATCCATAGATGTCCCAGAAATAATATCTGACTATACAGAGCAGCATTACCAAGCCACCAAGAAGTCTGCCTAGTAATGACAATGATAACAACAGCTAACACTTAATAATCACTTGCCTTACTGACAGATTCAGAGGAAGCCATCAGTTTTTTGGGCAGAATGAAGGGACAAATGGTGAACTGGTATCCGGGATGCTGCCTAGAACCCTGTCCATTTAAGAAGACACCCAGGTGATACGCAATGCACAAAAAGCACTGGAACTCCCAGCAGGCAAGCACTGCAGTCTATAAACCCTCTATTGAGAAAGGCCATGACATGTCTACCAGGGACACAGATTTGGGAGGCAGAACACAAGACAGGGTGAGGGTGAAAAGCAATGGCTACCTGGCCACGTCAGCCAAATCAGCTCCAAAAATCAATGCGATGACAGTGGTCACAGGCAGATCACTCTCACCTTATAACCTGGGATGGCACAGACCAGACAGATTATTTCATTTTGTTTTTTCATTATTTTTATTTACTTTTTTGGAGAGAGGGTCTCACTCCATTGCCCAGGCTGGAGTCCAGTGGTGTGATCATAGCTCACTGTAACCTTGAACTCCTGGACTCAAGTGATAAACCTGCAGCTGTCTTCCCTGAGTAGCTGGGACTACAGGTACACACCACTACACCGGGCCTCTCATTTTGCTTAATTTATTTAATTAGTCAACTAATTTTGAGGGAGGGCAGATTTTGGAAGTAAAGGGCATAGATGGTTCTGTAGTATGCGGAAATCTGAAGCTTTGCTAAGATGGGATCAACATGAAGCATCTGTACATGTACAAATTAGCAAATGTTACCATGACTAACAGTAAAATGAAGAATTAAGGAAATTATAAGGTTAATTTCCTTGAAGTCTCTCAGTAGTCATTTGTGTCTATAGGTGATTTTGTATTTTACAACATTGTATTTTCTAATTTCATGAAAGGAAAGCTAACCAAATTCGTGGATTTTATTTTTTGCCTCAGCCTCAAAAAGCCTTAGGGCTGATTCAGGCCTGGTTGTAGCAATCGGCTGTCTCAAAGGCCTCCTGCATGTTTAAATAGCTTCTCTCCTGTTTATTTTGCACTGTTTTATCCTGTAAGCTGTCTCGAGGCCCTTCCAATATAAGCATGAGGATTTAAATCTTAATAAATTGAGATTTGAA</dnaseq>|
 
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[[Category:Antisense]][[Category:lnc-FOXB1-3]]
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[[Category:Antisense]][[Category:lnc-FOXB1-3]][[Category:Transcripts]]

Latest revision as of 04:16, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-FOXB1-3:3

Source

LNCipedia2.1

Same with

,

Classification

antisense

Length

1946 nt

Genomic location

chr15+:60771380..60823166

Exon number

6

Exons

60771380..60771597,60780723..60780790,60802607..60802732,60812165..60812468,60820779..60820926,60822085..60823166

Genome context

Sequence
000001 GGCTGCTCCC CTCCTTTCCT CCCGCCACAA GCGCTCGCTG TGGTTCTGGC AGCGAAGTGC GAGACTGGGC TCGCCAGGCG 000080
000081 GAAGTGGTTG GAGACTGCGT GTTTTCCTAG AAAGTCCTCG ACCTTCGTCG GGGAGAGGAG GGGAGTGATA AATTGGAAGG 000160
000161 CGGACAAGCG ACAAGTGCGG TACTGGAAAG ACCCAAACAT ACTTGGTTGT GACCTCAGGA CTCAATAAAA TAAACAGCTG 000240
000241 GAAATAAGCA GACTAGTGTA AGAGTGAATT GAAAAGAAAA CCCAAGGTCA CATCTCCCAA GAAGCAGTAA TGTTCCAGCA 000320
000321 ATAAGAAAAG GACAGTTTTT TGTCTTTTGC ATGGTGAGCC TTATATGAAT TACATCAATT TTGTCACCAA TATCCATCAT 000400
000401 CAGAACATTT TGTGGCACTG TGGCTCGAAC CAATGTCCAG CTTCCACACT CTCTGCTTGG AAGAGGATTA CCCTTATTTG 000480
000481 GAAGTCTCAG TTTTGAGGAT TTGGGGAAAG CAGGCACGCA AGCAGACACA CCTTATTCTC TACAGCATCA TTTATACCTC 000560
000561 AACTAAGTCA GCTGAACAAA TGCCTGCTGA AAAGTTCTGG GAGTGGCATA GCTAAGAACC AGAAAGGCGA TCTTTCTTTT 000640
000641 GGATTAAGTC AACAGAGTCA TACCCACAAG GAGAACTATC AAATATCAGA TGCGAGAGGT GAAGTGGGGT TATAAGATTC 000720
000721 TACATAACAC ATTGCAAATG GTCACAACAA TCAAGACTAT ATCCATAGAT GTCCCAGAAA TAATATCTGA CTATACAGAG 000800
000801 CAGCATTACC AAGCCACCAA GAAGTCTGCC TAGTAATGAC AATGATAACA ACAGCTAACA CTTAATAATC ACTTGCCTTA 000880
000881 CTGACAGATT CAGAGGAAGC CATCAGTTTT TTGGGCAGAA TGAAGGGACA AATGGTGAAC TGGTATCCGG GATGCTGCCT 000960
000961 AGAACCCTGT CCATTTAAGA AGACACCCAG GTGATACGCA ATGCACAAAA AGCACTGGAA CTCCCAGCAG GCAAGCACTG 001040
001041 CAGTCTATAA ACCCTCTATT GAGAAAGGCC ATGACATGTC TACCAGGGAC ACAGATTTGG GAGGCAGAAC ACAAGACAGG 001120
001121 GTGAGGGTGA AAAGCAATGG CTACCTGGCC ACGTCAGCCA AATCAGCTCC AAAAATCAAT GCGATGACAG TGGTCACAGG 001200
001201 CAGATCACTC TCACCTTATA ACCTGGGATG GCACAGACCA GACAGATTAT TTCATTTTGT TTTTTCATTA TTTTTATTTA 001280
001281 CTTTTTTGGA GAGAGGGTCT CACTCCATTG CCCAGGCTGG AGTCCAGTGG TGTGATCATA GCTCACTGTA ACCTTGAACT 001360
001361 CCTGGACTCA AGTGATAAAC CTGCAGCTGT CTTCCCTGAG TAGCTGGGAC TACAGGTACA CACCACTACA CCGGGCCTCT 001440
001441 CATTTTGCTT AATTTATTTA ATTAGTCAAC TAATTTTGAG GGAGGGCAGA TTTTGGAAGT AAAGGGCATA GATGGTTCTG 001520
001521 TAGTATGCGG AAATCTGAAG CTTTGCTAAG ATGGGATCAA CATGAAGCAT CTGTACATGT ACAAATTAGC AAATGTTACC 001600
001601 ATGACTAACA GTAAAATGAA GAATTAAGGA AATTATAAGG TTAATTTCCT TGAAGTCTCT CAGTAGTCAT TTGTGTCTAT 001680
001681 AGGTGATTTT GTATTTTACA ACATTGTATT TTCTAATTTC ATGAAAGGAA AGCTAACCAA ATTCGTGGAT TTTATTTTTT 001760
001761 GCCTCAGCCT CAAAAAGCCT TAGGGCTGAT TCAGGCCTGG TTGTAGCAAT CGGCTGTCTC AAAGGCCTCC TGCATGTTTA 001840
001841 AATAGCTTCT CTCCTGTTTA TTTTGCACTG TTTTATCCTG TAAGCTGTCT CGAGGCCCTT CCAATATAAG CATGAGGATT 001920
001921 TAAATCTTAA TAAATTGAGA TTTGAA
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