Difference between revisions of "Lnc-PCYOX1L-2:3"

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sequence = <dnaseq>GTGGCCAGGGAGCCGCAGGCAAGGGACTAAGGGGAGGGGGGCTCAGTGCCAGCTGCTTAAAAATGCCCCTGTGGCAGCGAGGGGCACCAGAGGCTGGGTCTAATTAGTTGAGAAGCAGTGACACCCCCAACCACTCCCCAAACAGGCTGGCTCCCGTCTCCAGGCCCCAAGGAGCCACACCTGGACCAGACCCCAGGAAAGCCAAAGATGGAGACTATGGTACACTCTTCACAGCCAAGGGCAGGGGACAGAGGAGAGGCGGTGCCCAGGCAGGATGCAACTATCTCCAAGAGATAGTTAGAGGATGGCAGCCTATCTTGAGTTCTGGCTGCTCTGCCCAGGAGGTCCCTTTGAATGGCCAGAGATGGTCTCCAATGCTGTTGGCCTCCTGCAGAAGAAAGAGCCCAAGGCTGGGAATGGAAACCCTTGGTTCTATTCCTGGCTGTGCCCTAACTCTTCATATGACCTTCAACGCGACCTTGAACATGCAGCTTCCTCTGGCCTCAGTGTGTCCAGCGAGAGGCTAGACCCGGCCAGGCCTGGTGGCTCACTCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCATGAGGCAAGGGCGCTAGCTGGTGGGAGCCACCCCGCCATGCTGATGTCAGAGAAGCAAGAACTCTGGAGAAGCAGCCTCCTGGGACCAGAGGAGGGCCAGCAGCAGGCAGCCCGGAGACAGAACTAATGTGTCTGGGGGTGAGAGGACGGGTGTGACTGCTGAAACTTCCTTTCTTGGTGATTCCACATCACTCCTTTCTGATCCCTGAGCCTGTGCCACGCCCTGTGTGATGTGCCGGGGACACCAGGCTCACCCACGCCTCTCCAAGCCTCCCAACAGAAGACAGAGGTCCCCCACAGCCAGAGACATTTCCTGAAGACATGGGGAACACAGAGGCAGAAACAGCCCATCCACCCAGGAGCTGTCCCCCACACTGCCGGGAGCCGGCACCCAGAGCCGCCAGGTAAAACTGAGGCCACCTGGTTCAACATCACCTTTCACAGAAGGGGAAGCAGCCACAGAAAGAAGGGCCTCGTTAAGAAGTGGAACCTGGGACCCCCAAGCGGTGTCTCTCATCCTGACTGGGGATCCAGAGTAGGAGGGAGCCTTTGGTGGGGTAAGTGGAATGGGGCGGGGTGGGGGGTGGCCATAGACCCCTCTTCTCAGTAAGGCCCTCATGTGAAGGAGGCAGGGGTTGGGACAAGTGCTAAGTATGCAAGACTCAAGGGAAGAGCTGCTGGAGCCAGGAGAAGCACCTCCCTCCCGGCCCCTCTGCCCCTCCTCATAGCCCAGCTGCACTGACTCCTCCTCCAGGAAGCCTTCTCAGCTTCCCCAGGGGTGGGAACCTTTTTGTCCTCCAGGTGTGCTTGGCTGTCCTTTCTTGGGCTCTCTCTCTCTCTCTCTCCTCATCCCACTTGAGTCTGCCCCCTATTCACCTTGTGAGGGGAATTTTCCTTCTACTCAATCTGACCGAGGTCCTCCAGGTCAAGGACAGCGAGGCTCTCAGTCCCACTTCCCCTTGGCACATAGAAGAGGCAGTGCGCTGAAGGGACAGGTGAAATGATTAGACCCTGCCCCCAAACCAAGGCCTGGCCAATTGGACAGGGCATGAGACATTCAGCGTAGAGGTTAAAACGAGGGCCCTGGGTTAGGAACCCCAGCTCAGTTCTCAGCTCTGTACCCTTGGAAAATTCCCTTCCCATGGAGCTTTGTGGATGCACAAGGACTTGCACAAAGAAAACATTCAATATCCAGGACTATAAAATTCCACAAATGATTGTGCTTATTACATTCATTATCACGATGATTATTCCAGACACAAAGGAACAGAACGAGGCACCAACAGCAAGGGGCAAGCAGATTCAAGGGCCACAGAGGAGATGGAGGCAAACACCTTCCCCTGGTCAGAGGCTGTGCCTCAGCCCTTCTCCCTGCATCAGTTTCTCCTTCAGAAGCATGGGACTACCTCCCATCTAGTTCTCGTTTCTAAACCTAGGGGAGATGCTATCTTTGCTGCAATAATCTTAGCCTACATCTTGGAATGGAAATGGCCTTGGTGGAAATGGTCTTCAACTCCTCTGGTCCAAGCTCAGGCCCTGTGACCCTGGAACAATCCCCTTCCTGGTCCTCCATGTAGGAGCAATAACATTCCCTTGCCAGCAGCACCAGCCATTCTGATGATTAAATGGTATCGGACTCTGTTTTCCAAACTCAGTCATTCAGATGCCCCCTATTTTATTTCTTCCATGTCTGCAAATGATTATAATATTTTTAAATGTAGGATGAGTCCTTTTTATTACACATAGAAATAGCTACTGTAAATAGCAAACTCTAACACTGTGCCTAATTAGGAAATAAAGGTAACCATAAATACAGTAAAAATGAAACAATGTTATTATGGTTTAACCTGATAGTGTGGCTTGCAAGGCCCTGGGCCTGAAGCCTGGGCAATAAGTGAGAGTTAGAAAGGTGTCAAAGACATGATAGCAGCAAACTGAGGCTTTGTACCCCACGGTAAATAGGACTGAAAGCAAATTCACAGGGAGCAACTGATCCATTCCACAACAGAATGCTCCCTGTCAATTCGCTTTCCATTCTGTTGTGTCCTGTCTCCCAGCAGAGACTACAAACTCCCCAAAACCACTTACCCACCAGCTGCACGTGAGAAGCCAAAGGTAGTTTATGTGAAAGGGCTTTGGAAATAATCACGCACCAAGTGAAGGCAGAGGACACACCTTGTCAGCTTAGTTCTCAGCAGCAAATCATCTCTTTTCCAGGATAACCCTCCCTGATTCTTATTGAAATCTCTTTGCTGACCACACTAAGCTCTTCTCTCTCAGGGGCAGTGGGAGCCGTGGAGAGTGGAATAGACCAGCTGTCTGTGACCTGCGAGGGAGTCCAATGTCGGAATCACTCCCCAGCCAAATGCACGGTTTTAAAAAATCTATTTATTTATTTATGTAGAGACCAGGCTATGAGACTGGCTAATTTTTCGTATTTTTGGATAGAGACAGGATTTCATCGTGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCGATCCACCTGCCTCGGCTTCCCAAAGTGCTCAGGATTACAGGCGTGAGCCACT</dnaseq>|
 
sequence = <dnaseq>GTGGCCAGGGAGCCGCAGGCAAGGGACTAAGGGGAGGGGGGCTCAGTGCCAGCTGCTTAAAAATGCCCCTGTGGCAGCGAGGGGCACCAGAGGCTGGGTCTAATTAGTTGAGAAGCAGTGACACCCCCAACCACTCCCCAAACAGGCTGGCTCCCGTCTCCAGGCCCCAAGGAGCCACACCTGGACCAGACCCCAGGAAAGCCAAAGATGGAGACTATGGTACACTCTTCACAGCCAAGGGCAGGGGACAGAGGAGAGGCGGTGCCCAGGCAGGATGCAACTATCTCCAAGAGATAGTTAGAGGATGGCAGCCTATCTTGAGTTCTGGCTGCTCTGCCCAGGAGGTCCCTTTGAATGGCCAGAGATGGTCTCCAATGCTGTTGGCCTCCTGCAGAAGAAAGAGCCCAAGGCTGGGAATGGAAACCCTTGGTTCTATTCCTGGCTGTGCCCTAACTCTTCATATGACCTTCAACGCGACCTTGAACATGCAGCTTCCTCTGGCCTCAGTGTGTCCAGCGAGAGGCTAGACCCGGCCAGGCCTGGTGGCTCACTCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCATGAGGCAAGGGCGCTAGCTGGTGGGAGCCACCCCGCCATGCTGATGTCAGAGAAGCAAGAACTCTGGAGAAGCAGCCTCCTGGGACCAGAGGAGGGCCAGCAGCAGGCAGCCCGGAGACAGAACTAATGTGTCTGGGGGTGAGAGGACGGGTGTGACTGCTGAAACTTCCTTTCTTGGTGATTCCACATCACTCCTTTCTGATCCCTGAGCCTGTGCCACGCCCTGTGTGATGTGCCGGGGACACCAGGCTCACCCACGCCTCTCCAAGCCTCCCAACAGAAGACAGAGGTCCCCCACAGCCAGAGACATTTCCTGAAGACATGGGGAACACAGAGGCAGAAACAGCCCATCCACCCAGGAGCTGTCCCCCACACTGCCGGGAGCCGGCACCCAGAGCCGCCAGGTAAAACTGAGGCCACCTGGTTCAACATCACCTTTCACAGAAGGGGAAGCAGCCACAGAAAGAAGGGCCTCGTTAAGAAGTGGAACCTGGGACCCCCAAGCGGTGTCTCTCATCCTGACTGGGGATCCAGAGTAGGAGGGAGCCTTTGGTGGGGTAAGTGGAATGGGGCGGGGTGGGGGGTGGCCATAGACCCCTCTTCTCAGTAAGGCCCTCATGTGAAGGAGGCAGGGGTTGGGACAAGTGCTAAGTATGCAAGACTCAAGGGAAGAGCTGCTGGAGCCAGGAGAAGCACCTCCCTCCCGGCCCCTCTGCCCCTCCTCATAGCCCAGCTGCACTGACTCCTCCTCCAGGAAGCCTTCTCAGCTTCCCCAGGGGTGGGAACCTTTTTGTCCTCCAGGTGTGCTTGGCTGTCCTTTCTTGGGCTCTCTCTCTCTCTCTCTCCTCATCCCACTTGAGTCTGCCCCCTATTCACCTTGTGAGGGGAATTTTCCTTCTACTCAATCTGACCGAGGTCCTCCAGGTCAAGGACAGCGAGGCTCTCAGTCCCACTTCCCCTTGGCACATAGAAGAGGCAGTGCGCTGAAGGGACAGGTGAAATGATTAGACCCTGCCCCCAAACCAAGGCCTGGCCAATTGGACAGGGCATGAGACATTCAGCGTAGAGGTTAAAACGAGGGCCCTGGGTTAGGAACCCCAGCTCAGTTCTCAGCTCTGTACCCTTGGAAAATTCCCTTCCCATGGAGCTTTGTGGATGCACAAGGACTTGCACAAAGAAAACATTCAATATCCAGGACTATAAAATTCCACAAATGATTGTGCTTATTACATTCATTATCACGATGATTATTCCAGACACAAAGGAACAGAACGAGGCACCAACAGCAAGGGGCAAGCAGATTCAAGGGCCACAGAGGAGATGGAGGCAAACACCTTCCCCTGGTCAGAGGCTGTGCCTCAGCCCTTCTCCCTGCATCAGTTTCTCCTTCAGAAGCATGGGACTACCTCCCATCTAGTTCTCGTTTCTAAACCTAGGGGAGATGCTATCTTTGCTGCAATAATCTTAGCCTACATCTTGGAATGGAAATGGCCTTGGTGGAAATGGTCTTCAACTCCTCTGGTCCAAGCTCAGGCCCTGTGACCCTGGAACAATCCCCTTCCTGGTCCTCCATGTAGGAGCAATAACATTCCCTTGCCAGCAGCACCAGCCATTCTGATGATTAAATGGTATCGGACTCTGTTTTCCAAACTCAGTCATTCAGATGCCCCCTATTTTATTTCTTCCATGTCTGCAAATGATTATAATATTTTTAAATGTAGGATGAGTCCTTTTTATTACACATAGAAATAGCTACTGTAAATAGCAAACTCTAACACTGTGCCTAATTAGGAAATAAAGGTAACCATAAATACAGTAAAAATGAAACAATGTTATTATGGTTTAACCTGATAGTGTGGCTTGCAAGGCCCTGGGCCTGAAGCCTGGGCAATAAGTGAGAGTTAGAAAGGTGTCAAAGACATGATAGCAGCAAACTGAGGCTTTGTACCCCACGGTAAATAGGACTGAAAGCAAATTCACAGGGAGCAACTGATCCATTCCACAACAGAATGCTCCCTGTCAATTCGCTTTCCATTCTGTTGTGTCCTGTCTCCCAGCAGAGACTACAAACTCCCCAAAACCACTTACCCACCAGCTGCACGTGAGAAGCCAAAGGTAGTTTATGTGAAAGGGCTTTGGAAATAATCACGCACCAAGTGAAGGCAGAGGACACACCTTGTCAGCTTAGTTCTCAGCAGCAAATCATCTCTTTTCCAGGATAACCCTCCCTGATTCTTATTGAAATCTCTTTGCTGACCACACTAAGCTCTTCTCTCTCAGGGGCAGTGGGAGCCGTGGAGAGTGGAATAGACCAGCTGTCTGTGACCTGCGAGGGAGTCCAATGTCGGAATCACTCCCCAGCCAAATGCACGGTTTTAAAAAATCTATTTATTTATTTATGTAGAGACCAGGCTATGAGACTGGCTAATTTTTCGTATTTTTGGATAGAGACAGGATTTCATCGTGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCGATCCACCTGCCTCGGCTTCCCAAAGTGCTCAGGATTACAGGCGTGAGCCACT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-PCYOX1L-2]]
+
[[Category:Intergenic]][[Category:lnc-PCYOX1L-2]][[Category:Transcripts]]

Latest revision as of 04:53, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-PCYOX1L-2:3

Source

LNCipedia2.1

Same with

,

Classification

intergenic

Length

3148 nt

Genomic location

chr5+:148786441..148805957

Exon number

5

Exons

148786441..148786641,148795084..148795480,148801044..148801164,148802749..148802872,148803653..148805957

Genome context

Sequence
000001 GTGGCCAGGG AGCCGCAGGC AAGGGACTAA GGGGAGGGGG GCTCAGTGCC AGCTGCTTAA AAATGCCCCT GTGGCAGCGA 000080
000081 GGGGCACCAG AGGCTGGGTC TAATTAGTTG AGAAGCAGTG ACACCCCCAA CCACTCCCCA AACAGGCTGG CTCCCGTCTC 000160
000161 CAGGCCCCAA GGAGCCACAC CTGGACCAGA CCCCAGGAAA GCCAAAGATG GAGACTATGG TACACTCTTC ACAGCCAAGG 000240
000241 GCAGGGGACA GAGGAGAGGC GGTGCCCAGG CAGGATGCAA CTATCTCCAA GAGATAGTTA GAGGATGGCA GCCTATCTTG 000320
000321 AGTTCTGGCT GCTCTGCCCA GGAGGTCCCT TTGAATGGCC AGAGATGGTC TCCAATGCTG TTGGCCTCCT GCAGAAGAAA 000400
000401 GAGCCCAAGG CTGGGAATGG AAACCCTTGG TTCTATTCCT GGCTGTGCCC TAACTCTTCA TATGACCTTC AACGCGACCT 000480
000481 TGAACATGCA GCTTCCTCTG GCCTCAGTGT GTCCAGCGAG AGGCTAGACC CGGCCAGGCC TGGTGGCTCA CTCCTATAAT 000560
000561 CCCAGCACTT TGGGAGGCCA AGGCAGGCGG ATCATGAGGC AAGGGCGCTA GCTGGTGGGA GCCACCCCGC CATGCTGATG 000640
000641 TCAGAGAAGC AAGAACTCTG GAGAAGCAGC CTCCTGGGAC CAGAGGAGGG CCAGCAGCAG GCAGCCCGGA GACAGAACTA 000720
000721 ATGTGTCTGG GGGTGAGAGG ACGGGTGTGA CTGCTGAAAC TTCCTTTCTT GGTGATTCCA CATCACTCCT TTCTGATCCC 000800
000801 TGAGCCTGTG CCACGCCCTG TGTGATGTGC CGGGGACACC AGGCTCACCC ACGCCTCTCC AAGCCTCCCA ACAGAAGACA 000880
000881 GAGGTCCCCC ACAGCCAGAG ACATTTCCTG AAGACATGGG GAACACAGAG GCAGAAACAG CCCATCCACC CAGGAGCTGT 000960
000961 CCCCCACACT GCCGGGAGCC GGCACCCAGA GCCGCCAGGT AAAACTGAGG CCACCTGGTT CAACATCACC TTTCACAGAA 001040
001041 GGGGAAGCAG CCACAGAAAG AAGGGCCTCG TTAAGAAGTG GAACCTGGGA CCCCCAAGCG GTGTCTCTCA TCCTGACTGG 001120
001121 GGATCCAGAG TAGGAGGGAG CCTTTGGTGG GGTAAGTGGA ATGGGGCGGG GTGGGGGGTG GCCATAGACC CCTCTTCTCA 001200
001201 GTAAGGCCCT CATGTGAAGG AGGCAGGGGT TGGGACAAGT GCTAAGTATG CAAGACTCAA GGGAAGAGCT GCTGGAGCCA 001280
001281 GGAGAAGCAC CTCCCTCCCG GCCCCTCTGC CCCTCCTCAT AGCCCAGCTG CACTGACTCC TCCTCCAGGA AGCCTTCTCA 001360
001361 GCTTCCCCAG GGGTGGGAAC CTTTTTGTCC TCCAGGTGTG CTTGGCTGTC CTTTCTTGGG CTCTCTCTCT CTCTCTCTCC 001440
001441 TCATCCCACT TGAGTCTGCC CCCTATTCAC CTTGTGAGGG GAATTTTCCT TCTACTCAAT CTGACCGAGG TCCTCCAGGT 001520
001521 CAAGGACAGC GAGGCTCTCA GTCCCACTTC CCCTTGGCAC ATAGAAGAGG CAGTGCGCTG AAGGGACAGG TGAAATGATT 001600
001601 AGACCCTGCC CCCAAACCAA GGCCTGGCCA ATTGGACAGG GCATGAGACA TTCAGCGTAG AGGTTAAAAC GAGGGCCCTG 001680
001681 GGTTAGGAAC CCCAGCTCAG TTCTCAGCTC TGTACCCTTG GAAAATTCCC TTCCCATGGA GCTTTGTGGA TGCACAAGGA 001760
001761 CTTGCACAAA GAAAACATTC AATATCCAGG ACTATAAAAT TCCACAAATG ATTGTGCTTA TTACATTCAT TATCACGATG 001840
001841 ATTATTCCAG ACACAAAGGA